Mercurial > repos > devteam > bamtools

changeset 9:8eb649e67987 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/bamtools/bamtools commit eca92f6ec1b61f1a772b308cfcb1c7b3b7b22ea5
author iuc
date Wed, 18 Jun 2025 08:33:31 +0000
parents 970e6333f07e
children
files bamtools.xml macros.xml
diffstat 2 files changed, 21 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/bamtools.xml	Fri Mar 15 13:49:12 2024 +0000
+++ b/bamtools.xml	Wed Jun 18 08:33:31 2025 +0000
@@ -160,26 +160,38 @@
     <tests>
         <test>
             <param name="input_bams" ftype="bam" value="bamtools-input1.bam"/>
-            <param name="analysis_type_selector" value="convert"/>
-            <param name="format_type_selector" value="pileup"/>
-            <param name="reference_source_selector" value="history" />
-            <param name="mapqual" value="true" />
-            <param name="ref_file" ftype="fasta" value="bamtools-fasta.fa"/>
+            <conditional name="analysis_type">
+                <param name="analysis_type_selector" value="convert"/>
+                <conditional name="format_type">
+                    <param name="format_type_selector" value="pileup"/>
+                    <conditional name="reference_source">
+                        <param name="reference_source_selector" value="history" />
+                        <param name="ref_file" ftype="fasta" value="bamtools-fasta.fa"/>
+                    </conditional>
+                    <param name="mapqual" value="true" />
+                </conditional>
+            </conditional>
             <output name="out_file1" file="bamtools-convert-pileup.pu" />
         </test>
         <test>
             <param name="input_bams" ftype="bam" value="bamtools-input1.bam"/>
-            <param name="analysis_type_selector" value="count"/>
+            <conditional name="analysis_type">
+                <param name="analysis_type_selector" value="count"/>
+            </conditional>
             <output name="out_file1" file="bamtools-count.tab" />
         </test>
         <test>
             <param name="input_bams" ftype="bam" value="bamtools-input1.bam"/>
-            <param name="analysis_type_selector" value="coverage"/>
+            <conditional name="analysis_type">
+                <param name="analysis_type_selector" value="coverage"/>
+            </conditional>
             <output name="out_file1" file="bamtools-coverage.tab" />
         </test>
         <test>
             <param name="input_bams" ftype="bam" value="bamtools-input1.bam"/>
-            <param name="analysis_type_selector" value="header"/>
+            <conditional name="analysis_type">
+                <param name="analysis_type_selector" value="header"/>
+            </conditional>
             <output name="out_file1" file="bamtools-header.txt" />
         </test>
     </tests>
--- a/macros.xml	Fri Mar 15 13:49:12 2024 +0000
+++ b/macros.xml	Wed Jun 18 08:33:31 2025 +0000
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <macros>
     <token name="@TOOL_VERSION@">2.5.2</token>
-    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@VERSION_SUFFIX@">3</token>
     <xml name="xrefs">
         <xrefs>
             <xref type="bio.tools">bamtools</xref>