annotate test-data/blastp_sample.xml @ 2:45ba7c750bc8 draft

This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).

<?xml version="1.0"?>
<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd">
<BlastOutput>
  <BlastOutput_program>blastp</BlastOutput_program>
  <BlastOutput_version>BLASTP 2.2.24+</BlastOutput_version>
  <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
  <BlastOutput_db>nr</BlastOutput_db>
  <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
  <BlastOutput_query-def>Sample</BlastOutput_query-def>
  <BlastOutput_query-len>516</BlastOutput_query-len>
  <BlastOutput_param>
    <Parameters>
      <Parameters_matrix>BLOSUM62</Parameters_matrix>
      <Parameters_expect>1e-30</Parameters_expect>
      <Parameters_gap-open>11</Parameters_gap-open>
      <Parameters_gap-extend>1</Parameters_gap-extend>
      <Parameters_filter>F</Parameters_filter>
    </Parameters>
  </BlastOutput_param>
  <BlastOutput_iterations>
    <Iteration>
      <Iteration_iter-num>1</Iteration_iter-num>
      <Iteration_query-ID>Query_1</Iteration_query-ID>
      <Iteration_query-def>Sample</Iteration_query-def>
      <Iteration_query-len>516</Iteration_query-len>
      <Iteration_hits>
        <Hit>
          <Hit_num>1</Hit_num>
          <Hit_id>gi|119953746|ref|YP_950551.1|</Hit_id>
          <Hit_def>tail tape measure protein [Streptococcus phage SMP] &gt;gi|118430558|gb|ABK91882.1| tail tape measure protein [Streptococcus suis phage SMP]</Hit_def>
          <Hit_accession>YP_950551</Hit_accession>
          <Hit_len>659</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>949.117592429394</Hsp_bit-score>
              <Hsp_score>2452</Hsp_score>
              <Hsp_evalue>0</Hsp_evalue>
              <Hsp_query-from>1</Hsp_query-from>
              <Hsp_query-to>516</Hsp_query-to>
              <Hsp_hit-from>27</Hsp_hit-from>
              <Hsp_hit-to>542</Hsp_hit-to>
              <Hsp_query-frame>0</Hsp_query-frame>
              <Hsp_hit-frame>0</Hsp_hit-frame>
              <Hsp_identity>500</Hsp_identity>
              <Hsp_positive>500</Hsp_positive>
              <Hsp_gaps>0</Hsp_gaps>
              <Hsp_align-len>516</Hsp_align-len>
              <Hsp_qseq>FHLLNSGGSALSVMFAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_qseq>
              <Hsp_hseq>FHLLNSGGSALSVMFAKLVGIIAGISAPIWAVIGVIAALVAGFVLLYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_hseq>
              <Hsp_midline>FHLLNSGGSALSVMFAKLVGIIAGISAPIW                YNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
        <Hit>
          <Hit_num>2</Hit_num>
          <Hit_id>gi|148986157|ref|ZP_01819143.1|</Hit_id>
          <Hit_def>unknown phage protein [Streptococcus pneumoniae SP3-BS71] &gt;gi|147921871|gb|EDK72998.1| unknown phage protein [Streptococcus pneumoniae SP3-BS71]</Hit_def>
          <Hit_accession>ZP_01819143</Hit_accession>
          <Hit_len>1031</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>174.481245259597</Hsp_bit-score>
              <Hsp_score>441</Hsp_score>
              <Hsp_evalue>1.54640812741294e-41</Hsp_evalue>
              <Hsp_query-from>49</Hsp_query-from>
              <Hsp_query-to>300</Hsp_query-to>
              <Hsp_hit-from>679</Hsp_hit-from>
              <Hsp_hit-to>897</Hsp_hit-to>
              <Hsp_query-frame>0</Hsp_query-frame>
              <Hsp_hit-frame>0</Hsp_hit-frame>
              <Hsp_identity>104</Hsp_identity>
              <Hsp_positive>148</Hsp_positive>
              <Hsp_gaps>33</Hsp_gaps>
              <Hsp_align-len>252</Hsp_align-len>
              <Hsp_qseq>TNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWS</Hsp_qseq>
              <Hsp_hseq>TNEGFRDAVTTVWNAILEVINAVVSEISNFVMSIFGTVVTWWTENQELIRTSAETVWNAIYTVISTILDILGPLLQAGWDNIQLIITTTWEIIKIVVETAINVVLGVIQAVMQIITGDWSGAWETIKGVFSTVWQAIQSIVQT-------IFSAIQSYISNILNGISGT----VSNIWNSIKDTVSN----------------------VLNAISSTVSSVWEGIKSTISSAINGARDAVSSAIEAIKGLFN</Hsp_hseq>
              <Hsp_midline>TNE FR  V   W AI   I+  V  + +FVM ++G +V WW ENQELIR +AETVWNAI TV+ T++  L P++Q  WD I  ++TT   +IK VV+T + VVLG+I+AVMQ+I GDWSGAWET+KGV  T+W+ I+S+VQ        IF    +++ +I + + GT    V  IW+ IK TVSN                      V NAIS+  S++W  I +T+ S +      + + +E IK +++</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
        <Hit>
          <Hit_num>3</Hit_num>
          <Hit_id>gi|77411259|ref|ZP_00787609.1|</Hit_id>
          <Hit_def>tail tape meausure protein [Streptococcus agalactiae CJB111] &gt;gi|77162685|gb|EAO73646.1| tail tape meausure protein [Streptococcus agalactiae CJB111]</Hit_def>
          <Hit_accession>ZP_00787609</Hit_accession>
          <Hit_len>1039</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>165.621655013498</Hsp_bit-score>
              <Hsp_score>418</Hsp_score>
              <Hsp_evalue>7.61538823982138e-39</Hsp_evalue>
              <Hsp_query-from>50</Hsp_query-from>
              <Hsp_query-to>310</Hsp_query-to>
              <Hsp_hit-from>655</Hsp_hit-from>
              <Hsp_hit-to>904</Hsp_hit-to>
              <Hsp_query-frame>0</Hsp_query-frame>
              <Hsp_hit-frame>0</Hsp_hit-frame>
              <Hsp_identity>107</Hsp_identity>
              <Hsp_positive>158</Hsp_positive>
              <Hsp_gaps>11</Hsp_gaps>
              <Hsp_align-len>261</Hsp_align-len>
              <Hsp_qseq>NEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVF</Hsp_qseq>
              <Hsp_hseq>HEGFRTAVTEIWNAIYAFLSVIIQQISSFVMSIWGTLTTWWTENQQLILNAANTVWTAISTVIQTIMTILGPYLQASWENIKLIITTAWDIIKVVVETAINVVLGIIKAVMQIITGDWSGAWETIKQVVSTVWEAIKSLISIVLSAIAQ-------FISNSWNGIKGTMTNLL----NSIKSVVSNVWNSIKSTISSILSSIGSTVSSVWNGMKATISGVLSGISNTVSSVWNGVKSTITNAINGAKNAVSSAINAIKNLF</Hsp_hseq>
              <Hsp_midline>+E FRT V   W AI + +S  ++ + SFVM +WG +  WW ENQ+LI   A TVW AI TV++T+MT L P +Q +W+ I  ++TT  ++IK VV+T + VVLGIIKAVMQ+I GDWSGAWET+K V  T+WE IKSL+ + +  + Q       F+ + W+ + GT+  ++    + IK+ VSN   ++   I +I++SI +T  +VWN +    S + + IS TV SV   +   I   +   K   S+A   IK +F</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
        <Hit>
          <Hit_num>4</Hit_num>
          <Hit_id>gi|76786754|ref|YP_329383.1|</Hit_id>
          <Hit_def>prophage LambdaSa04, tail tape measure protein, TP901 family [Streptococcus agalactiae A909] &gt;gi|76561811|gb|ABA44395.1| prophage LambdaSa04, tail tape measure protein, TP901 family [Streptococcus agalactiae A909]</Hit_def>
          <Hit_accession>YP_329383</Hit_accession>
          <Hit_len>1039</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>159.073262222903</Hsp_bit-score>
              <Hsp_score>401</Hsp_score>
              <Hsp_evalue>6.55719737745379e-37</Hsp_evalue>
              <Hsp_query-from>50</Hsp_query-from>
              <Hsp_query-to>310</Hsp_query-to>
              <Hsp_hit-from>655</Hsp_hit-from>
              <Hsp_hit-to>904</Hsp_hit-to>
              <Hsp_query-frame>0</Hsp_query-frame>
              <Hsp_hit-frame>0</Hsp_hit-frame>
              <Hsp_identity>103</Hsp_identity>
              <Hsp_positive>156</Hsp_positive>
              <Hsp_gaps>11</Hsp_gaps>
              <Hsp_align-len>261</Hsp_align-len>
              <Hsp_qseq>NEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVF</Hsp_qseq>
              <Hsp_hseq>HEGFRTAVTEIWNAIYAFLTVIIQQISSFVMSIWGTLITWWTENQQLILNATNTVWTAISTVIQTIMTILAPYLQASWENIKLIITTAWDIIKVVVETAINVVLGIIKAVMQIITGDWSGAWETIKQVVSTVWEVIKSLISIVLSAIAQ-------FISNSWNGIKGTMTNLL----NSIKGVVSNVWNGIKSTISSILSSIGSTVSSIWNGMKATISGVLSGISSTVSFVWNGVKSTITNAINGAKNAVSSAINAIKNLF</Hsp_hseq>
              <Hsp_midline>+E FRT V   W AI + ++  ++ + SFVM +WG ++ WW ENQ+LI     TVW AI TV++T+MT L P +Q +W+ I  ++TT  ++IK VV+T + VVLGIIKAVMQ+I GDWSGAWET+K V  T+WE IKSL+ + +  + Q       F+ + W+ + GT+  ++    + IK  VSN    +   I +I++SI +T  ++WN +    S + + IS+TV  V   +   I   +   K   S+A   IK +F</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
        <Hit>
          <Hit_num>5</Hit_num>
          <Hit_id>gi|153811333|ref|ZP_01964001.1|</Hit_id>
          <Hit_def>hypothetical protein RUMOBE_01725 [Ruminococcus obeum ATCC 29174] &gt;gi|149832460|gb|EDM87544.1| hypothetical protein RUMOBE_01725 [Ruminococcus obeum ATCC 29174]</Hit_def>
          <Hit_accession>ZP_01964001</Hit_accession>
          <Hit_len>1228</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>157.147264343316</Hsp_bit-score>
              <Hsp_score>396</Hsp_score>
              <Hsp_evalue>2.33083876931167e-36</Hsp_evalue>
              <Hsp_query-from>3</Hsp_query-from>
              <Hsp_query-to>516</Hsp_query-to>
              <Hsp_hit-from>573</Hsp_hit-from>
              <Hsp_hit-to>1059</Hsp_hit-to>
              <Hsp_query-frame>0</Hsp_query-frame>
              <Hsp_hit-frame>0</Hsp_hit-frame>
              <Hsp_identity>167</Hsp_identity>
              <Hsp_positive>247</Hsp_positive>
              <Hsp_gaps>113</Hsp_gaps>
              <Hsp_align-len>557</Hsp_align-len>
              <Hsp_qseq>LLNSGGSALSVMFAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQV---AIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLI-----------KQAISNAWEIIKTKT-----------------------SEIWNAITTFLSGIWEGIKTAASTAWEWIKTT-ISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIEN-IKSTVSNGWNNL---VSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLI-NGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_qseq>
              <Hsp_hseq>LVKAGG--FSGVFTKALGLI---TSPAAIVVGVIAAITAVIIHLWNTNEDFRNTITAIWQKIKDAFTT---------------FAAGISERLSALGITFSDVTSAIKTIWDGFCNLLAPVLEAAFSTIAIALQTAFNVI-----------LGIWDVFSAVFSGDWSGAWEAIKGIFSSIWDGLKEYFSTIIGAVKGVADVF---LGWFGTNWETVWNGVKTFFEGIW--------NGISSFFEGI--------------WNGISTFCTTVWNGIVTNVTAFCTTVHDTISTIFNAVKDVVSNVWETIKNVVQVAIMFIVEVVKAAFELITVPFRFIWENCRDTIISVWETIKSAVQTAINFVKDNIITPVMNAISATITTVWNAIQTTFTTVINAIKSAVQTAWNFMKDNVVTPVMNAISTTISTVWNTIKTTFTTVINAIKSAVQTAWNFMKNSVITPVMNGIKTVITTVWNAIKTAVQTVVNA---IKTTVQTVF-NAVKTTVTTIWNAIKTGTSTAWN----AVKTAVTTPINAAKSAVTSAIN------GIKS</Hsp_hseq>
              <Hsp_midline>L+ +GG   S +F K +G+I   ++P                  +NTNE+FR  + A W+ IK A +T                 A  +E    +  T   V +AI+T+ +     L P+++ A+  I   + T  NVI           LGI      + +GDWSGAWE +KG+  +IW+G+K        A+ G+  +F   L +  + W+TVW  +      IW        N I++ +E I              WN IST  + +W  I T V +  TT+   I T    +K V S  WE IK V    ++ IV +V   F+LI           +  I + WE IK+                         + +WNAI T  + +   IK+A  TAW ++K   ++ VM  I + I T WN IKT+ +  +N IKSA + AWN +K+++ T + N IK+ ++  WN +   V TV NA   I + V+T F NAV      I NAI  G     N     VK A    I+A   AV+ AI+      GIKS</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
        <Hit>
          <Hit_num>6</Hit_num>
          <Hit_id>gi|56962696|ref|YP_174422.1|</Hit_id>
          <Hit_def>hypothetical protein ABC0922 [Bacillus clausii KSM-K16] &gt;gi|56908934|dbj|BAD63461.1| phage-related protein [Bacillus clausii KSM-K16]</Hit_def>
          <Hit_accession>YP_174422</Hit_accession>
          <Hit_len>593</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>146.746875793547</Hsp_bit-score>
              <Hsp_score>369</Hsp_score>
              <Hsp_evalue>3.12404663750498e-33</Hsp_evalue>
              <Hsp_query-from>48</Hsp_query-from>
              <Hsp_query-to>433</Hsp_query-to>
              <Hsp_hit-from>123</Hsp_hit-from>
              <Hsp_hit-to>465</Hsp_hit-to>
              <Hsp_query-frame>0</Hsp_query-frame>
              <Hsp_hit-frame>0</Hsp_hit-frame>
              <Hsp_identity>112</Hsp_identity>
              <Hsp_positive>187</Hsp_positive>
              <Hsp_gaps>49</Hsp_gaps>
              <Hsp_align-len>389</Hsp_align-len>
              <Hsp_qseq>NTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGL---VQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSN</Hsp_qseq>
              <Hsp_hseq>QTNETFRNGVIQAWEAIKTTMETVVATIVTFVSEKLAQIKAFWDEHGAAVMQAVTNIFNGIKSIIEPVMNGILAIMQFVWPFIVSLIQMVWGNIQGVISGALNIIMGLVKAFAGLFTGDFS-----------LMWEGIKQLFSGALEAIWNVVQLLLFGR--LLKIASSLFTGLMGVFSKMWGAISNLFLTALNGIRSFFSTIFTPIQ-------NVVMTVMGFIRNAISTG----LTTASNVVQTVLTAIRTVFLTVFNAVRNV-----------VTTAISFVQNFISTGISAARTAVTSALNAIKTTFTTIFNAVRSSVTTAMTNIKTAISN-------GIQSAWQ----AVLNFVGRFREAGKNIVNSIAEGITSAIGAVKNAISN</Hsp_hseq>
              <Hsp_midline> TNE FR  V  AWEAIK+ + T V  +V+FV +   Q+ A+W+E+   + Q    ++N I++++E VM  ++ I+Q  W  I++++  V   I+ V+   L +++G++KA   +  GD+S            +WEGIK L   A++ +   VQ+   G   L  I  +++  +M V   +W  I      A+  +      I T IQ       N + TV   I  AIST     LTT    +QT L  I+TV+   +  ++ V           VT     ++  IS      +T  +   NAI T  + I+  ++++ +TA   IKT ISN        I++AW     ++ N +   + A +N  N+I   I++AI  +K+ +SN</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
        <Hit>
          <Hit_num>7</Hit_num>
          <Hit_id>gi|50914476|ref|YP_060448.1|</Hit_id>
          <Hit_def>unknown phage protein [Streptococcus pyogenes MGAS10394] &gt;gi|40218580|gb|AAR83234.1| prophage pi2 protein [Streptococcus pyogenes] &gt;gi|50261625|gb|AAT72393.1| unknown [Streptococcus pyogenes] &gt;gi|50903550|gb|AAT87265.1| unknown phage protein [Streptococcus pyogenes MGAS10394]</Hit_def>
          <Hit_accession>YP_060448</Hit_accession>
          <Hit_len>1039</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>146.36167621763</Hsp_bit-score>
              <Hsp_score>368</Hsp_score>
              <Hsp_evalue>4.74132513340056e-33</Hsp_evalue>
              <Hsp_query-from>50</Hsp_query-from>
              <Hsp_query-to>227</Hsp_query-to>
              <Hsp_hit-from>655</Hsp_hit-from>
              <Hsp_hit-to>832</Hsp_hit-to>
              <Hsp_query-frame>0</Hsp_query-frame>
              <Hsp_hit-frame>0</Hsp_hit-frame>
              <Hsp_identity>78</Hsp_identity>
              <Hsp_positive>112</Hsp_positive>
              <Hsp_gaps>0</Hsp_gaps>
              <Hsp_align-len>178</Hsp_align-len>
              <Hsp_qseq>NEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWD</Hsp_qseq>
              <Hsp_hseq>NEGFRTAVIEIWNAIYAFISVIIQEISTFIMTIWGTLTTWWTENQALIQAAVETVWNAISTVIQTVMSLIGPYLEAAWANIQLIITTAWEIIKTVVETAITVVLGIIKAIMQAITGDWSGAWETIKGVLQRVWQAIQQIVTTILSAIGQFISNTWNGIKNTFSNILSAISGIVSSIWN</Hsp_hseq>
              <Hsp_midline>NE FRT V   W AI + IS  ++ + +F+M +WG +  WW ENQ LI+   ETVWNAI TV++TVM+ + P ++ AW  I  ++TT   +IKTVV+T + VVLGIIKA+MQ I GDWSGAWET+KGV   +W+ I+ +V   +  + Q        +K+ +  +   I  +V  IW+</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
        <Hit>
          <Hit_num>8</Hit_num>
          <Hit_id>gi|29374987|ref|NP_814140.1|</Hit_id>
          <Hit_def>tail protein [Enterococcus faecalis V583] &gt;gi|29342445|gb|AAO80211.1| tail protein [Enterococcus faecalis V583]</Hit_def>
          <Hit_accession>NP_814140</Hit_accession>
          <Hit_len>1049</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>139.0428842752</Hsp_bit-score>
              <Hsp_score>349</Hsp_score>
              <Hsp_evalue>6.84844401007043e-31</Hsp_evalue>
              <Hsp_query-from>73</Hsp_query-from>
              <Hsp_query-to>482</Hsp_query-to>
              <Hsp_hit-from>545</Hsp_hit-from>
              <Hsp_hit-to>920</Hsp_hit-to>
              <Hsp_query-frame>0</Hsp_query-frame>
              <Hsp_hit-frame>0</Hsp_hit-frame>
              <Hsp_identity>110</Hsp_identity>
              <Hsp_positive>196</Hsp_positive>
              <Hsp_gaps>78</Hsp_gaps>
              <Hsp_align-len>432</Hsp_align-len>
              <Hsp_qseq>EAVVSFVMDLWGQMVAWWNENQELIRQ-------TAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVL----NVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSIS-----------NALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGF</Hsp_qseq>
              <Hsp_hseq>DSIVKTASGLKGSLVKTWNDITAKVSEIWKKFTDAGKKTFDGFKKTVENVFNGIKNFLQTVWNVIYAVVGAIIVNTINIWKGIFDG--------FKAYFQYL-------WDLIKAIATGVWEKIGDTVTGIINGFIGVIKGIFDAFKTFFQQIWDAVVYSVTIAWNGIKNTVTSVSTAIKNFVTPIFNAIKTTITNVFNAIKNTATNVWNAIKTTISNVVQTILNF---------------------------------VTPIFNTMKNTITNIFNAIRNTASSVWNSIKTTISNIVTSVKNTVINIFNALKNSITNIFNAIRNTASTVWNSIKSTVSNIVSATVNTVKNLFNGMKNTVSSIWDGVRNTISNVVNAVKNTISNVWGGITGTVSN----IFNGVKNAIDGPMNAAKNLVKNVV----DAIKGF</Hsp_hseq>
              <Hsp_midline>+++V     L G +V  WN+    + +         +  ++  +  VE V   +   +QT W++I AVV  ++    N+ K + D          KA  Q +       W+ +K +A  +WE I   V   I+G + + +      K+ +  +W  ++  V   W+ IK TV++  TA+   +  I  +I+TT   V+NAI   A+N+W AI TT+ +V+ TI  +                                 VT  F+ +K  I+N +  I+   S +WN+I T +S I   +K      +  +K +I+N+   I++   T WN+IK+++S           N  N +K+   + W+ +++ IS  +  +K+T+SN W  +  TV+N    I + V+   D  +NAA+N + N +    D I GF</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
        <Hit>
          <Hit_num>9</Hit_num>
          <Hit_id>gi|163941333|ref|YP_001646217.1|</Hit_id>
          <Hit_def>prophage LambdaBa01, membrane protein, putative [Bacillus weihenstephanensis KBAB4] &gt;gi|163863530|gb|ABY44589.1| prophage LambdaBa01, membrane protein, putative [Bacillus weihenstephanensis KBAB4]</Hit_def>
          <Hit_accession>YP_001646217</Hit_accession>
          <Hit_len>725</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>138.657684699283</Hsp_bit-score>
              <Hsp_score>348</Hsp_score>
              <Hsp_evalue>8.15996781441799e-31</Hsp_evalue>
              <Hsp_query-from>61</Hsp_query-from>
              <Hsp_query-to>480</Hsp_query-to>
              <Hsp_hit-from>142</Hsp_hit-from>
              <Hsp_hit-to>560</Hsp_hit-to>
              <Hsp_query-frame>0</Hsp_query-frame>
              <Hsp_hit-frame>0</Hsp_hit-frame>
              <Hsp_identity>118</Hsp_identity>
              <Hsp_positive>203</Hsp_positive>
              <Hsp_gaps>29</Hsp_gaps>
              <Hsp_align-len>434</Hsp_align-len>
              <Hsp_qseq>WEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIK---AVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKT----VWS-------AAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLIN</Hsp_qseq>
              <Hsp_hseq>WDAIKQWTIDAWNAIGEFLVGIWDGIVQWASEAWNSISESTSAVWNSIKEFLIGIWNGIVEFVVT-WGT--AILETYVGIWTSIFNFCMEIWNGIVEYLTSVLQGIATFFTEIWTSISTFFQEIWNGLVAFITPVLQGIADFFAM-----------IWNGISTVIQTVWNFITQYLQAIWTAILYFATPLFESIKNFISECWNKISSTTSLVWETIKNFLVSCWNGLVSFVTPIFEKIKSWIISVWDTISSATMAVWNAVKNFLQACWNGLVSIVTPIFDAIKNWIVNVWNAISSTTSAVWNAIKSYLSSLWNSIVSTASSIFNSIKSAISTVWNMISSASSSVWNGIKSTLSSIWNGIKSTASSVWNGLKDAIMTPVRWVTSAVSGAFNGMKSAVLGVWDGIKSGIRTAINGIIRIINKFI-DGFNTPAELLN</Hsp_hseq>
              <Hsp_midline>W+AIK     A  A+  F++ +W  +V W +E    I ++   VWN+I+  +  +   ++  V T W    A++ T + +  ++ +  +++  GI++   +V+Q I   ++  W ++      IW G+ + +   + G+   F             +W  I  V+  +W++I   +    TA+      +  SI+      WN IS+  S +W  I   ++S    +  ++    E IK+    VW        A W  +K    A    +V +VT  FD IK  I N W  I + TS +WNAI ++LS +W  I + AS+ +  IK+ IS V   I S   + WN IK+++S+  N IKS A + WN +K AI T +  + S VS  +N + S V      I S +RT  +  +     FI +  +   +L+N</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
      </Iteration_hits>
      <Iteration_stat>
        <Statistics>
          <Statistics_db-num>6589360</Statistics_db-num>
          <Statistics_db-len>-2041834015</Statistics_db-len>
          <Statistics_hsp-len>0</Statistics_hsp-len>
          <Statistics_eff-space>504129014857</Statistics_eff-space>
          <Statistics_kappa>0.041</Statistics_kappa>
          <Statistics_lambda>0.267</Statistics_lambda>
          <Statistics_entropy>0.14</Statistics_entropy>
        </Statistics>
      </Iteration_stat>
    </Iteration>
  </BlastOutput_iterations>
</BlastOutput>