Mercurial > repos > devteam > blast_datatypes

annotate test-data/four_human_proteins.fasta @ 2:45ba7c750bc8 draft

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This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
author peterjc
date Thu, 20 Sep 2012 10:12:43 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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2
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
1 >sp|Q9BS26|ERP44_HUMAN Endoplasmic reticulum resident protein 44 OS=Homo sapiens GN=ERP44 PE=1 SV=1
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
2 MHPAVFLSLPDLRCSLLLLVTWVFTPVTTEITSLDTENIDEILNNADVALVNFYADWCRF
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
3 SQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMK
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
4 REYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIGYFEQKDSDNYRVFER
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
5 VANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDK
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
6 CVPLVREITFENGEELTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHAD
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
7 CDKFRHPLLHIQKTPADCPVIAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKLHREF
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
8 HHGPDPTDTAPGEQAQDVASSPPESSFQKLAPSEYRYTLLRDRDEL
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
9 >sp|Q9NSY1|BMP2K_HUMAN BMP-2-inducible protein kinase OS=Homo sapiens GN=BMP2K PE=1 SV=2
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
10 MKKFSRMPKSEGGSGGGAAGGGAGGAGAGAGCGSGGSSVGVRVFAVGRHQVTLEESLAEG
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
11 GFSTVFLVRTHGGIRCALKRMYVNNMPDLNVCKREITIMKELSGHKNIVGYLDCAVNSIS
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
12 DNVWEVLILMEYCRAGQVVNQMNKKLQTGFTEPEVLQIFCDTCEAVARLHQCKTPIIHRD
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
13 LKVENILLNDGGNYVLCDFGSATNKFLNPQKDGVNVVEEEIKKYTTLSYRAPEMINLYGG
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
14 KPITTKADIWALGCLLYKLCFFTLPFGESQVAICDGNFTIPDNSRYSRNIHCLIRFMLEP
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
15 DPEHRPDIFQVSYFAFKFAKKDCPVSNINNSSIPSALPEPMTASEAAARKSQIKARITDT
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
16 IGPTETSIAPRQRPKANSATTATPSVLTIQSSATPVKVLAPGEFGNHRPKGALRPGNGPE
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
17 ILLGQGPPQQPPQQHRVLQQLQQGDWRLQQLHLQHRHPHQQQQQQQQQQQQQQQQQQQQQ
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
18 QQQQQQHHHHHHHHLLQDAYMQQYQHATQQQQMLQQQFLMHSVYQPQPSASQYPTMMPQY
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
19 QQAFFQQQMLAQHQPSQQQASPEYLTSPQEFSPALVSYTSSLPAQVGTIMDSSYSANRSV
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
20 ADKEAIANFTNQKNISNPPDMSGWNPFGEDNFSKLTEEELLDREFDLLRSNRLEERASSD
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
21 KNVDSLSAPHNHPPEDPFGSVPFISHSGSPEKKAEHSSINQENGTANPIKNGKTSPASKD
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
22 QRTGKKTSVQGQVQKGNDESESDFESDPPSPKSSEEEEQDDEEVLQGEQGDFNDDDTEPE
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
23 NLGHRPLLMDSEDEEEEEKHSSDSDYEQAKAKYSDMSSVYRDRSGSGPTQDLNTILLTSA
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
24 QLSSDVAVETPKQEFDVFGAVPFFAVRAQQPQQEKNEKNLPQHRFPAAGLEQEEFDVFTK
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
25 APFSKKVNVQECHAVGPEAHTIPGYPKSVDVFGSTPFQPFLTSTSKSESNEDLFGLVPFD
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
26 EITGSQQQKVKQRSLQKLSSRQRRTKQDMSKSNGKRHHGTPTSTKKTLKPTYRTPERARR
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
27 HKKVGRRDSQSSNEFLTISDSKENISVALTDGKDRGNVLQPEESLLDPFGAKPFHSPDLS
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
28 WHPPHQGLSDIRADHNTVLPGRPRQNSLHGSFHSADVLKMDDFGAVPFTELVVQSITPHQ
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
29 SQQSQPVELDPFGAAPFPSKQ
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
30 >sp|P06213|INSR_HUMAN Insulin receptor OS=Homo sapiens GN=INSR PE=1 SV=4
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
31 MATGGRRGAAAAPLLVAVAALLLGAAGHLYPGEVCPGMDIRNNLTRLHELENCSVIEGHL
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
32 QILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYAL
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
33 VIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNE
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
34 ECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECL
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
35 GNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQG
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
36 CHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGC
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
37 TVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETL
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
38 EIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQE
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
39 RNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQ
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
40 NVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFS
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
41 DERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWE
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
42 RQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQIL
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
43 KELEESSFRKTFEDYLHNVVFVPRKTSSGTGAEDPRPSRKRRSLGDVGNVTVAVPTVAAF
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
44 PNTSSTSVPTSPEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYV
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
45 SARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCV
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
46 SRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIAKIIIG
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
47 PLIFVFLFSVVIGSIYLFLRKRQPDGPLGPLYASSNPEYLSASDVFPCSVYVPDEWEVSR
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
48 EKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKG
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
49 FTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMA
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
50 AEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
51 RWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDN
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
52 CPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENKAPESEELEME
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
53 FEDMENVPLDRSSHCQREEAGGRDGGSSLGFKRSYEEHIPYTHMNGGKKNGRILTLPRSN
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
54 PS
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
55 >sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
56 MNGTEGPNFYVPFSNATGVVRSPFEYPQYYLAEPWQFSMLAAYMFLLIVLGFPINFLTLY
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
57 VTVQHKKLRTPLNYILLNLAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLG
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
58 GEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLAGWSRYIP
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
59 EGLQCSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIIIFFCYGQLVFTVKEAAAQQQES
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
60 ATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAI
45ba7c750bc8 This update should have no functional effect. Renamed files (since xml.py will be inaccurate once BLAST databases are added in future update).
peterjc
parents:
diff changeset
61 YNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQVAPA