Mercurial > repos > devteam > blast_datatypes
comparison datatypes_conf.txt @ 1:10dce68b584b draft
Uploaded with readme file (no code changes). Calling this v0.0.11 to match the BLAST+ wrappers.
| author | peterjc |
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| date | Thu, 23 Aug 2012 09:33:16 -0400 |
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| 0:e1c29f302301 | 1:10dce68b584b |
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| 1 Galaxy datatypes for NCBI BLAST+ suite | |
| 2 ====================================== | |
| 3 | |
| 4 These Galaxy datatypes are copyright 2010-2012 by Peter Cock, The James Hutton | |
| 5 Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. | |
| 6 See the licence text below. | |
| 7 | |
| 8 Note that these files (and the associated BLAST+ wrappers) were originally | |
| 9 distributed as part of the main Galaxy repository, but as of August 2012 moved | |
| 10 to the Galaxy Tool Shed as 'blast_datatypes' (and 'ncbi_blast_plus' for the | |
| 11 wrappers). My thanks to Dannon Baker from the Galaxy development team for his | |
| 12 assistance with this. | |
| 13 | |
| 14 | |
| 15 Installation | |
| 16 ============ | |
| 17 | |
| 18 Doing this automatically via the Galaxy Tool Shed is probably simplest. | |
| 19 | |
| 20 | |
| 21 History | |
| 22 ======= | |
| 23 | |
| 24 These versions numbers match those for 'ncbi_blast_plus', but are not used | |
| 25 explicitly in the datatypes themselves. | |
| 26 | |
| 27 v0.0.11 - Final revision as part of the Galaxy main repository, and the | |
| 28 first release via the Tool Shed | |
| 29 | |
| 30 | |
| 31 Developers | |
| 32 ========== | |
| 33 | |
| 34 BLAST+ datatypes and wrappers, and other tools are being developed on the | |
| 35 following hg branch: http://bitbucket.org/peterjc/galaxy-central/src/tools | |
| 36 | |
| 37 For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball I use | |
| 38 the following command from the Galaxy tools/ncbi_blast_plus folder: | |
| 39 | |
| 40 $ tar -czf blast_datatypes.tar.gz datatypes_conf.txt datatypes_conf.xml xml.py | |
| 41 | |
| 42 Check this worked: | |
| 43 | |
| 44 $ tar -tzf blast_datatypes.tar.gz | |
| 45 datatypes_conf.txt | |
| 46 datatypes_conf.xml | |
| 47 xml.py | |
| 48 | |
| 49 | |
| 50 Licence (MIT/BSD style) | |
| 51 ======================= | |
| 52 | |
| 53 Permission to use, copy, modify, and distribute this software and its | |
| 54 documentation with or without modifications and for any purpose and | |
| 55 without fee is hereby granted, provided that any copyright notices | |
| 56 appear in all copies and that both those copyright notices and this | |
| 57 permission notice appear in supporting documentation, and that the | |
| 58 names of the contributors or copyright holders not be used in | |
| 59 advertising or publicity pertaining to distribution of the software | |
| 60 without specific prior permission. | |
| 61 | |
| 62 THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL | |
| 63 WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED | |
| 64 WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE | |
| 65 CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT | |
| 66 OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS | |
| 67 OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE | |
| 68 OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE | |
| 69 OR PERFORMANCE OF THIS SOFTWARE. | |
| 70 | |
| 71 NOTE: This is the licence for the Galaxy BLAST datatypes only. BLAST+ | |
| 72 and associated data files are available and licenced separately. |