annotate datatypes_conf.txt @ 1:10dce68b584b draft

Uploaded with readme file (no code changes). Calling this v0.0.11 to match the BLAST+ wrappers.

Galaxy datatypes for NCBI BLAST+ suite
======================================

These Galaxy datatypes are copyright 2010-2012 by Peter Cock, The James Hutton
Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
See the licence text below.

Note that these files (and the associated BLAST+ wrappers) were originally
distributed as part of the main Galaxy repository, but as of August 2012 moved
to the Galaxy Tool Shed as 'blast_datatypes' (and 'ncbi_blast_plus' for the
wrappers). My thanks to Dannon Baker from the Galaxy development team for his
assistance with this.


Installation
============

Doing this automatically via the Galaxy Tool Shed is probably simplest.


History
=======

These versions numbers match those for 'ncbi_blast_plus', but are not used
explicitly in the datatypes themselves.

v0.0.11 - Final revision as part of the Galaxy main repository, and the
          first release via the Tool Shed


Developers
==========

BLAST+ datatypes and wrappers, and other tools are being developed on the
following hg branch: http://bitbucket.org/peterjc/galaxy-central/src/tools

For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball I use
the following command from the Galaxy tools/ncbi_blast_plus folder:

$ tar -czf blast_datatypes.tar.gz datatypes_conf.txt datatypes_conf.xml xml.py

Check this worked:

$ tar -tzf blast_datatypes.tar.gz
datatypes_conf.txt
datatypes_conf.xml
xml.py


Licence (MIT/BSD style)
=======================

Permission to use, copy, modify, and distribute this software and its
documentation with or without modifications and for any purpose and
without fee is hereby granted, provided that any copyright notices
appear in all copies and that both those copyright notices and this
permission notice appear in supporting documentation, and that the
names of the contributors or copyright holders not be used in
advertising or publicity pertaining to distribution of the software
without specific prior permission.

THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
OR PERFORMANCE OF THIS SOFTWARE.

NOTE: This is the licence for the Galaxy BLAST datatypes  only. BLAST+
and associated data files are available and licenced separately.