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changeset 21:3ba8d4563129 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bowtie2 commit 9bbf35d7f47e5ab6b78248c9907b71446d4e7b0c
author iuc
date Tue, 10 Apr 2018 18:40:49 -0400
parents dc1639b66f12
children c3dd1aeb7d07
files bowtie2_wrapper.xml
diffstat 1 files changed, 2 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/bowtie2_wrapper.xml	Tue Jan 23 12:20:20 2018 -0500
+++ b/bowtie2_wrapper.xml	Tue Apr 10 18:40:49 2018 -0400
@@ -9,6 +9,8 @@
     </requirements>
     <version_command>bowtie2 --version</version_command>
     <command detect_errors="exit_code"><![CDATA[
+## Use pipefail if available to quit with first non-zero exit code
+set -o | grep -q pipefail && set -o pipefail;
 ## prepare bowtie2 index
 #set index_path = ''
 #if str($reference_genome.source) == "history":