diff tool_dependencies.xml @ 3:9ca609a2a421 draft

Uploaded complex repository dependency for bowtie 0.12.7.

--- a/tool_dependencies.xml	Thu Jan 16 13:08:38 2014 -0500
+++ b/tool_dependencies.xml	Fri Feb 21 12:40:39 2014 -0500
@@ -1,30 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="bowtie" version="0.12.7">
-        <install version="1.0">
-            <actions>
-                <action type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie/0.12.7/bowtie-0.12.7-src.zip</action>
-                <action type="shell_command">make</action>
-                <action type="move_file">
-                    <source>bowtie</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="move_file">
-                    <source>bowtie-build</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="move_file">
-                    <source>bowtie-inspect</source>
-                    <destination>$INSTALL_DIR/bin</destination>
-                </action>
-                <action type="set_environment">
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-Compiling Bowtie requires libpthread to be present on your system.
-        </readme>
+        <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>
-