Mercurial > repos > devteam > bwa_wrappers
changeset 0:ffa8aaa14f7c draft
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bwa_color_wrapper.xml Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,485 @@ +<tool id="bwa_color_wrapper" name="Map with BWA for SOLiD" version="1.0.2"> + <requirements> + <requirement type="package" version="0.5.9">bwa</requirement> + </requirements> + <description></description> + <parallelism method="basic"></parallelism> + <command interpreter="python"> + bwa_wrapper.py + --threads="4" + --color-space + + ## reference source + --fileSource=$genomeSource.refGenomeSource + #if $genomeSource.refGenomeSource == "history": + ##build index on the fly + --ref="${genomeSource.ownFile}" + --dbkey=$dbkey + #else: + ##use precomputed indexes + --ref="${genomeSource.indices.fields.path}" + --do_not_build_index + #end if + + ## input file(s) + --input1=$paired.input1 + #if $paired.sPaired == "paired": + --input2=$paired.input2 + #end if + + ## output file + --output=$output + + ## run parameters + --genAlignType=$paired.sPaired + --params=$params.source_select + #if $params.source_select != "pre_set": + --maxEditDist=$params.maxEditDist + --fracMissingAligns=$params.fracMissingAligns + --maxGapOpens=$params.maxGapOpens + --maxGapExtens=$params.maxGapExtens + --disallowLongDel=$params.disallowLongDel + --disallowIndel=$params.disallowIndel + --seed=$params.seed + --maxEditDistSeed=$params.maxEditDistSeed + --mismatchPenalty=$params.mismatchPenalty + --gapOpenPenalty=$params.gapOpenPenalty + --gapExtensPenalty=$params.gapExtensPenalty + --suboptAlign="${params.suboptAlign}" + --noIterSearch=$params.noIterSearch + --outputTopN=$params.outputTopN + --outputTopNDisc=$params.outputTopNDisc + --maxInsertSize=$params.maxInsertSize + --maxOccurPairing=$params.maxOccurPairing + #if $params.readGroup.specReadGroup == "yes" + --rgid="$params.readGroup.rgid" + --rgcn="$params.readGroup.rgcn" + --rgds="$params.readGroup.rgds" + --rgdt="$params.readGroup.rgdt" + --rgfo="$params.readGroup.rgfo" + --rgks="$params.readGroup.rgks" + --rglb="$params.readGroup.rglb" + --rgpg="$params.readGroup.rgpg" + --rgpi="$params.readGroup.rgpi" + --rgpl="$params.readGroup.rgpl" + --rgpu="$params.readGroup.rgpu" + --rgsm="$params.readGroup.rgsm" + #end if + #end if + + ## suppress output SAM header + --suppressHeader=$suppressHeader + </command> + <requirements> + <requirement type="package">bwa</requirement> + </requirements> + <inputs> + <conditional name="genomeSource"> + <param name="refGenomeSource" type="select" label="Will you select a reference genome from your history or use a built-in index?"> + <option value="indexed">Use a built-in index</option> + <option value="history">Use one from the history</option> + </param> + <when value="indexed"> + <param name="indices" type="select" label="Select a reference genome"> + <options from_data_table="bwa_indexes_color"> + <filter type="sort_by" column="2" /> + <validator type="no_options" message="No indexes are available for the selected input dataset" /> + </options> + </param> + </when> + <when value="history"> + <param name="ownFile" type="data" format="fasta" metadata_name="dbkey" label="Select a reference from history" /> + </when> + </conditional> + <conditional name="paired"> + <param name="sPaired" type="select" label="Is this library mate-paired?"> + <option value="single">Single-end</option> + <option value="paired">Paired-end</option> + </param> + <when value="single"> + <param name="input1" type="data" format="fastqcssanger" label="FASTQ file (Nucleotide-space recoded from color-space)"> + <help>Convert color-space data to nucleotide-space (see help section below for steps). Must have Sanger-scaled quality values with ASCII offset 33</help> + </param> + </when> + <when value="paired"> + <param name="input1" type="data" format="fastqcssanger" label="Forward FASTQ file (Nucleotide-space recoded from color-space)" help="Must have Sanger-scaled quality values with ASCII offset 33"> + <help>Convert color-space data to nucleotide-space (see help section below for steps). Must have Sanger-scaled quality values with ASCII offset 33</help> + </param> + <param name="input2" type="data" format="fastqcssanger" label="Reverse FASTQ file (Nucleotide-space recoded from color-space)" help="Must have Sanger-scaled quality values with ASCII offset 33"> + <help>Convert color-space data to nucleotide-space (see help section below for steps). Must have Sanger-scaled quality values with ASCII offset 33</help> + </param> + </when> + </conditional> + <conditional name="params"> + <param name="source_select" type="select" label="BWA settings to use" help="For most mapping needs use Commonly Used settings. If you want full control use Full Parameter List"> + <option value="pre_set">Commonly Used</option> + <option value="full">Full Parameter List</option> + </param> + <when value="pre_set" /> + <when value="full"> + <param name="maxEditDist" type="integer" value="0" label="Maximum edit distance (aln -n)" help="Enter this value OR a fraction of missing alignments, not both" /> + <param name="fracMissingAligns" type="float" value="0.04" label="Fraction of missing alignments given 2% uniform base error rate (aln -n)" help="Enter this value OR maximum edit distance, not both" /> + <param name="maxGapOpens" type="integer" value="1" label="Maximum number of gap opens (aln -o)" /> + <param name="maxGapExtens" type="integer" value="-1" label="Maximum number of gap extensions (aln -e)" help="-1 for k-difference mode (disallowing long gaps)" /> + <param name="disallowLongDel" type="integer" value="16" label="Disallow long deletion within [value] bp towards the 3'-end (aln -d)" /> + <param name="disallowIndel" type="integer" value="5" label="Disallow insertion/deletion within [value] bp towards the end (aln -i)" /> + <param name="seed" type="integer" value="-1" label="Number of first subsequences to take as seed (aln -l)" help="Enter -1 for infinity" /> + <param name="maxEditDistSeed" type="integer" value="2" label="Maximum edit distance in the seed (aln -k)" /> + <param name="mismatchPenalty" type="integer" value="3" label="Mismatch penalty (aln -M)" help="BWA will not search for suboptimal hits with a score lower than [value]" /> + <param name="gapOpenPenalty" type="integer" value="11" label="Gap open penalty (aln -O)" /> + <param name="gapExtensPenalty" type="integer" value="4" label="Gap extension penalty (aln -E)" /> + <param name="suboptAlign" type="integer" optional="True" label="Proceed with suboptimal alignments if there are no more than INT equally best hits. (aln -R)" help="For paired-end reads only. By default, BWA only searches for suboptimal alignments if the top hit is unique. Using this option has no effect on accuracy for single-end reads. It is mainly designed for improving the alignment accuracy of paired-end reads. However, the pairing procedure will be slowed down, especially for very short reads (~32bp)" /> + <param name="noIterSearch" type="boolean" truevalue="true" falsevalue="false" checked="no" label="Disable iterative search (aln -N)" help="All hits with no more than maxDiff differences will be found. This mode is much slower than the default" /> + <param name="outputTopN" type="integer" value="3" label="Maximum number of alignments to output in the XA tag for reads paired properly (samse/sampe -n)" help="If a read has more than INT hits, the XA tag will not be written" /> + <param name="outputTopNDisc" type="integer" value="10" label="Maximum number of alignments to output in the XA tag for disconcordant read pairs (excluding singletons) (sampe -N)" help="For paired-end reads only. If a read has more than INT hits, the XA tag will not be written" /> + <param name="maxInsertSize" type="integer" value="500" label="Maximum insert size for a read pair to be considered as being mapped properly (sampe -a)" help="For paired-end reads only. Only used when there are not enough good alignments to infer the distribution of insert sizes" /> + <param name="maxOccurPairing" type="integer" value="100000" label="Maximum occurrences of a read for pairing (sampe -o)" help="For paired-end reads only. A read with more occurrences will be treated as a single-end read. Reducing this parameter helps faster pairing" /> + <conditional name="readGroup"> + <param name="specReadGroup" type="select" label="Specify the read group for this file? (samse/sampe -r)"> + <option value="yes">Yes</option> + <option value="no" selected="True">No</option> + </param> + <when value="yes"> + <param name="rgid" type="text" size="25" label="Read group identifier (ID). Each @RG line must have a unique ID. The value of ID is used in the RG +tags of alignment records. Must be unique among all read groups in header section." help="Required if RG specified. Read group +IDs may be modified when merging SAM files in order to handle collisions." /> + <param name="rgcn" type="text" size="25" label="Sequencing center that produced the read (CN)" help="Optional" /> + <param name="rgds" type="text" size="25" label="Description (DS)" help="Optional" /> + <param name="rgdt" type="text" size="25" label="Date that run was produced (DT)" help="Optional. ISO8601 format date or date/time, like YYYY-MM-DD" /> + <param name="rgfo" type="text" size="25" label="Flow order (FO). The array of nucleotide bases that correspond to the nucleotides used for each +flow of each read." help="Optional. Multi-base flows are encoded in IUPAC format, and non-nucleotide flows by +various other characters. Format : /\*|[ACMGRSVTWYHKDBN]+/" /> + <param name="rgks" type="text" size="25" label="The array of nucleotide bases that correspond to the key sequence of each read (KS)" help="Optional" /> + <param name="rglb" type="text" size="25" label="Library name (LB)" help="Required if RG specified" /> + <param name="rgpg" type="text" size="25" label="Programs used for processing the read group (PG)" help="Optional" /> + <param name="rgpi" type="text" size="25" label="Predicted median insert size (PI)" help="Optional" /> + <param name="rgpl" type="text" size="25" label="Platform/technology used to produce the reads (PL)" help="Required if RG specified. Valid values : CAPILLARY, LS454, ILLUMINA, +SOLID, HELICOS, IONTORRENT and PACBIO" /> + <param name="rgpu" type="text" size="25" label="Platform unit (PU)" help="Optional. Unique identifier (e.g. flowcell-barcode.lane for Illumina or slide for SOLiD)" /> + <param name="rgsm" type="text" size="25" label="Sample (SM)" help="Required if RG specified. Use pool name where a pool is being sequenced" /> + </when> + <when value="no" /> + </conditional> + </when> + </conditional> + <param name="suppressHeader" type="boolean" truevalue="true" falsevalue="false" checked="False" label="Suppress the header in the output SAM file" help="BWA produces SAM with several lines of header information" /> + </inputs> + <outputs> + <data format="sam" name="output" label="${tool.name} on ${on_string}: mapped reads"> + <actions> + <conditional name="genomeSource.refGenomeSource"> + <when value="indexed"> + <action type="metadata" name="dbkey"> + <option type="from_data_table" name="bwa_indexes_color" column="1"> + <filter type="param_value" column="0" value="#" compare="startswith" keep="False"/> + <filter type="param_value" ref="genomeSource.indices" column="0" /> + </option> + </action> + </when> + <when value="history"> + <action type="metadata" name="dbkey"> + <option type="from_param" name="genomeSource.ownFile" param_attribute="dbkey" /> + </action> + </when> + </conditional> + </actions> + </data> + </outputs> + <tests> + <test> + <!-- + BWA commands: + cp test-data/hg19chrX_midpart.fasta hg19chrX_midpart.fasta + bwa index -c -a is hg19chrX_midpart.fasta + bwa aln -t 4 -c hg19chrX_midpart.fasta test-data/bwa_wrapper_in4.fastqcssanger > bwa_wrapper_out4.sai + bwa samse hg19chrX_midpart.fasta bwa_wrapper_out4.sai test-data/bwa_wrapper_in4.fastqcssanger > bwa_wrapper_out4.u.sam + hg19chrX_midpart.fasta is the prefix for the reference files (hg19chrX_midpart.fasta.amb, hg19chrX_midpart.fasta.ann, hg19chrX_midpart.fasta.bwt, ...) + It's just part of hg19 chrX, from the middle of the chromosome + plain old sort doesn't handle underscores like python: + python -c "import sys; lines=file(sys.argv[1],'rb').readlines(); lines.sort(); file(sys.argv[2],'wb').write(''.join(lines))" bwa_wrapper_out4.u.sam bwa_wrapper_out4.sam + --> + <param name="refGenomeSource" value="history" /> + <param name="ownFile" value="hg19chrX_midpart.fasta" /> + <param name="sPaired" value="single" /> + <param name="input1" value="bwa_wrapper_in4.fastqcssanger" ftype="fastqcssanger" /> + <param name="source_select" value="pre_set" /> + <param name="suppressHeader" value="false" /> + <output name="output" file="bwa_wrapper_out4.sam" ftype="sam" sort="True" lines_diff="2" /> + </test> + <test> + <!-- + BWA commands: + bwa aln -t 4 -c equCab2chrM_cs.fa test-data/bwa_wrapper_in5.fastqcssanger > bwa_wrapper_out5a.sai + bwa aln -t 4 -c equCab2chrM_cs.fa test-data/bwa_wrapper_in6.fastqcssanger > bwa_wrapper_out5b.sai + bwa sampe equCab2chrM_cs.fa bwa_wrapper_out5a.sai bwa_wrapper_out5b.sai test-data/bwa_wrapper_in5.fastqcssanger test-data/bwa_wrapper_in6.fastqcssanger > bwa_wrapper_out5.u.sam + equCab2chrM_cs.fa is the prefix of the index files (equCab2chrM_cs.fa.amb, equCab2chrM_cs.fa.ann, ...) + remove the comment lines (beginning with '@') from the resulting sam file + plain old sort doesn't handle underscores like python: + python -c "import sys; lines=file(sys.argv[1],'rb').readlines(); lines.sort(); file(sys.argv[2],'wb').write(''.join(lines))" bwa_wrapper_out5.u.sam bwa_wrapper_out5.sam + --> + <param name="refGenomeSource" value="indexed" /> + <param name="indices" value="equCab2chrM" /> + <param name="sPaired" value="paired" /> + <param name="input1" value="bwa_wrapper_in5.fastqcssanger" ftype="fastqcssanger" /> + <param name="input2" value="bwa_wrapper_in6.fastqcssanger" ftype="fastqcssanger" /> + <param name="source_select" value="pre_set" /> + <param name="suppressHeader" value="true" /> + <output name="output" file="bwa_wrapper_out5.sam" ftype="sam" sort="True" /> + </test> + <test> + <!-- + BWA commands: + bwa aln -n 0.04 -o 1 -e -1 -d 16 -i 5 -k 2 -t 4 -M 3 -O 11 -E 4 -R -N -c hg19chrX_midpart.fasta test-data/bwa_wrapper_in4.fastqcssanger > bwa_wrapper_out6.sai + bwa samse -n 3 -r "@RG\tID:474747\tDS:description\tDT:2011-03-14\tLB:lib-child-1-A\tPI:200\tPL:SOLID\tSM:child-1" hg19chrX_midpart.fasta bwa_wrapper_out6.sai test-data/bwa_wrapper_in4.fastqcssanger > bwa_wrapper_out6.u.sam + hg19chrX_midpart_cs.fa is the prefix of the index files (hg19chrX_midpart.fa.amb, hg19chrX_midpart.fa.ann, ...) + (It's just part of hg19 chrX, from the middle of the chromosome) + plain old sort doesn't handle underscores like python: + python -c "import sys; lines=file(sys.argv[1],'rb').readlines(); lines.sort(); file(sys.argv[2],'wb').write(''.join(lines))" bwa_wrapper_out6.u.sam bwa_wrapper_out6.sam + --> + <param name="refGenomeSource" value="indexed" /> + <param name="indices" value="hg19chrX_midpart" /> + <param name="sPaired" value="single" /> + <param name="input1" value="bwa_wrapper_in4.fastqcssanger" ftype="fastqcssanger" /> + <param name="source_select" value="full" /> + <param name="maxEditDist" value="0" /> + <param name="fracMissingAligns" value="0.04" /> + <param name="maxGapOpens" value="1" /> + <param name="maxGapExtens" value="-1" /> + <param name="disallowLongDel" value="16" /> + <param name="disallowIndel" value="5" /> + <param name="seed" value="-1" /> + <param name="maxEditDistSeed" value="2" /> + <param name="mismatchPenalty" value="3" /> + <param name="gapOpenPenalty" value="11" /> + <param name="gapExtensPenalty" value="4" /> + <param name="suboptAlign" value="" /> + <param name="noIterSearch" value="true" /> + <param name="outputTopN" value="3" /> + <param name="outputTopNDisc" value="10" /> + <param name="maxInsertSize" value="500" /> + <param name="maxOccurPairing" value="100000" /> + <param name="specReadGroup" value="yes" /> + <param name="rgid" value="474747" /> + <param name="rgcn" value="" /> + <param name="rgds" value="description" /> + <param name="rgdt" value="2011-03-14" /> + <param name="rgfo" value="" /> + <param name="rgks" value="" /> + <param name="rglb" value="lib-child-1-A" /> + <param name="rgpg" value="" /> + <param name="rgpi" value="200" /> + <param name="rgpl" value="SOLID" /> + <param name="rgpu" value="" /> + <param name="rgsm" value="child-1" /> + <param name="suppressHeader" value="false" /> + <output name="output" file="bwa_wrapper_out6.sam" ftype="sam" sort="True" lines_diff="2" /> + </test> + <test> + <!-- + BWA commands: + cp test-data/chr_m.fasta chr_m.fasta + bwa index -c -a is chr_m.fasta + bwa aln -n 0.04 -o 1 -e -1 -d 16 -i 5 -k 2 -t 4 -M 3 -O 11 -E 4 -R -N -c chr_m.fasta test-data/bwa_wrapper_in5.fastqcssanger > bwa_wrapper_out7a.sai + bwa aln -n 0.04 -o 1 -e -1 -d 16 -i 5 -k 2 -t 4 -M 3 -O 11 -E 4 -R -N -c chr_m.fasta test-data/bwa_wrapper_in6.fastqcssanger > bwa_wrapper_out7b.sai + bwa sampe -a 100 -o 2 -n 3 -N 10 chr_m.fasta bwa_wrapper_out7a.sai bwa_wrapper_out7b.sai test-data/bwa_wrapper_in5.fastqcssanger test-data/bwa_wrapper_in6.fastqcssanger > bwa_wrapper_out7.u.sam + chr_m.fasta is the prefix of the index files (chr_m.fasta.amb, chr_m.fasta.ann, ...) + plain old sort doesn't handle underscores like python: + python -c "import sys; lines=file(sys.argv[1],'rb').readlines(); lines.sort(); file(sys.argv[2],'wb').write(''.join(lines))" bwa_wrapper_out7.u.sam bwa_wrapper_out7.sam + --> + <param name="refGenomeSource" value="history" /> + <param name="ownFile" value="chr_m.fasta" /> + <param name="sPaired" value="paired" /> + <param name="input1" value="bwa_wrapper_in5.fastqcssanger" ftype="fastqcssanger" /> + <param name="input2" value="bwa_wrapper_in6.fastqcssanger" ftype="fastqcssanger" /> + <param name="source_select" value="full" /> + <param name="maxEditDist" value="0" /> + <param name="fracMissingAligns" value="0.04" /> + <param name="maxGapOpens" value="1" /> + <param name="maxGapExtens" value="-1" /> + <param name="disallowLongDel" value="16" /> + <param name="disallowIndel" value="5" /> + <param name="seed" value="-1" /> + <param name="maxEditDistSeed" value="2" /> + <param name="mismatchPenalty" value="3" /> + <param name="gapOpenPenalty" value="11" /> + <param name="gapExtensPenalty" value="4" /> + <param name="suboptAlign" value="" /> + <param name="noIterSearch" value="true" /> + <param name="outputTopN" value="3" /> + <param name="outputTopNDisc" value="10" /> + <param name="maxInsertSize" value="100" /> + <param name="maxOccurPairing" value="2" /> + <param name="specReadGroup" value="no" /> + <param name="suppressHeader" value="false" /> + <output name="output" file="bwa_wrapper_out7.sam" ftype="sam" sort="True" lines_diff="2" /> + </test> + </tests> + <help> + +**What it does** + +BWA is a fast light-weighted tool that aligns relatively short sequences (queries) to a sequence database (large), such as the human reference genome. It is developed by Heng Li at the Sanger Insitute. Li H. and Durbin R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-60. + +------ + +**Know what you are doing** + +.. class:: warningmark + +There is no such thing (yet) as an automated gearshift in short read mapping. It is all like stick-shift driving in San Francisco. In other words = running this tool with default parameters will probably not give you meaningful results. A way to deal with this is to **understand** the parameters by carefully reading the `documentation`__ and experimenting. Fortunately, Galaxy makes experimenting easy. + + .. __: http://bio-bwa.sourceforge.net/ + +------ + +**Input formats** + +BWA accepts files in Sanger FASTQ format. Use the FASTQ Groomer to prepare your files, set to either FASTQ Sanger or FASTQ Color Space Sanger as appropriate. + +If you have Color Space Sanger, it must be converted to nucleotide-space first. To do this, use the Manipulate FASTQ tool under NGS: QC and manipulation, with the following settings: + Manipulate reads on Sequence Content, choosing Change Adapter Base, and having the text box empty. + Manipulate reads on Sequence Content, doing a String Translate from "01234." to "ACGTN". + + +------ + +**A Note on Built-in Reference Genomes** + +The default variant for all genomes is "Full", defined as all primary chromosomes (or scaffolds/contigs) including mitochondrial plus associated unmapped, plasmid, and other segments. When only one version of a genome is available in this tool, it represents the default "Full" variant. Some genomes will have more than one variant available. The "Canonical Male" or sometimes simply "Canonical" variant contains the primary chromosomes for a genome. For example a human "Canonical" variant contains chr1-chr22, chrX, chrY, and chrM. The "Canonical Female" variant contains the primary chromosomes excluding chrY. + +------ + +**Outputs** + +The output is in SAM format, and has the following columns:: + + Column Description + -------- -------------------------------------------------------- + 1 QNAME Query (pair) NAME + 2 FLAG bitwise FLAG + 3 RNAME Reference sequence NAME + 4 POS 1-based leftmost POSition/coordinate of clipped sequence + 5 MAPQ MAPping Quality (Phred-scaled) + 6 CIGAR extended CIGAR string + 7 MRNM Mate Reference sequence NaMe ('=' if same as RNAME) + 8 MPOS 1-based Mate POSition + 9 ISIZE Inferred insert SIZE + 10 SEQ query SEQuence on the same strand as the reference + 11 QUAL query QUALity (ASCII-33 gives the Phred base quality) + 12 OPT variable OPTional fields in the format TAG:VTYPE:VALU + +The flags are as follows:: + + Flag Description + ------ ------------------------------------- + 0x0001 the read is paired in sequencing + 0x0002 the read is mapped in a proper pair + 0x0004 the query sequence itself is unmapped + 0x0008 the mate is unmapped + 0x0010 strand of the query (1 for reverse) + 0x0020 strand of the mate + 0x0040 the read is the first read in a pair + 0x0080 the read is the second read in a pair + 0x0100 the alignment is not primary + +It looks like this (scroll sideways to see the entire example):: + + QNAME FLAG RNAME POS MAPQ CIAGR MRNM MPOS ISIZE SEQ QUAL OPT + HWI-EAS91_1_30788AAXX:1:1:1761:343 4 * 0 0 * * 0 0 AAAAAAANNAAAAAAAAAAAAAAAAAAAAAAAAAAACNNANNGAGTNGNNNNNNNGCTTCCCACAGNNCTGG hhhhhhh;;hhhhhhhhhhh^hOhhhhghhhfhhhgh;;h;;hhhh;h;;;;;;;hhhhhhghhhh;;Phhh + HWI-EAS91_1_30788AAXX:1:1:1578:331 4 * 0 0 * * 0 0 GTATAGANNAATAAGAAAAAAAAAAATGAAGACTTTCNNANNTCTGNANNNNNNNTCTTTTTTCAGNNGTAG hhhhhhh;;hhhhhhhhhhhhhhhhhhhhhhhhhhhh;;h;;hhhh;h;;;;;;;hhhhhhhhhhh;;hhVh + +------- + +**BWA settings** + +All of the options have a default value. You can change any of them. All of the options in BWA have been implemented here. + +------ + +**BWA parameter list** + +This is an exhaustive list of BWA options: + +For **aln**:: + + -n NUM Maximum edit distance if the value is INT, or the fraction of missing + alignments given 2% uniform base error rate if FLOAT. In the latter + case, the maximum edit distance is automatically chosen for different + read lengths. [0.04] + -o INT Maximum number of gap opens [1] + -e INT Maximum number of gap extensions, -1 for k-difference mode + (disallowing long gaps) [-1] + -d INT Disallow a long deletion within INT bp towards the 3'-end [16] + -i INT Disallow an indel within INT bp towards the ends [5] + -l INT Take the first INT subsequence as seed. If INT is larger than the + query sequence, seeding will be disabled. For long reads, this option + is typically ranged from 25 to 35 for '-k 2'. [inf] + -k INT Maximum edit distance in the seed [2] + -t INT Number of threads (multi-threading mode) [1] + -M INT Mismatch penalty. BWA will not search for suboptimal hits with a score + lower than (bestScore-misMsc). [3] + -O INT Gap open penalty [11] + -E INT Gap extension penalty [4] + -c Reverse query but not complement it, which is required for alignment + in the color space. + -R Proceed with suboptimal alignments even if the top hit is a repeat. By + default, BWA only searches for suboptimal alignments if the top hit is + unique. Using this option has no effect on accuracy for single-end + reads. It is mainly designed for improving the alignment accuracy of + paired-end reads. However, the pairing procedure will be slowed down, + especially for very short reads (~32bp). + -N Disable iterative search. All hits with no more than maxDiff + differences will be found. This mode is much slower than the default. + +For **samse**:: + + -n INT Maximum number of alignments to output in the XA tag for reads paired + properly. If a read has more than INT hits, the XA tag will not be + written. [3] + -r STR Specify the read group in a format like '@RG\tID:foo\tSM:bar' [null] + +For **sampe**:: + + -a INT Maximum insert size for a read pair to be considered as being mapped + properly. Since version 0.4.5, this option is only used when there + are not enough good alignment to infer the distribution of insert + sizes. [500] + -n INT Maximum number of alignments to output in the XA tag for reads paired + properly. If a read has more than INT hits, the XA tag will not be + written. [3] + -N INT Maximum number of alignments to output in the XA tag for disconcordant + read pairs (excluding singletons). If a read has more than INT hits, + the XA tag will not be written. [10] + -o INT Maximum occurrences of a read for pairing. A read with more + occurrences will be treated as a single-end read. Reducing this + parameter helps faster pairing. [100000] + -r STR Specify the read group in a format like '@RG\tID:foo\tSM:bar' [null] + +For specifying the read group in **samse** or **sampe**, use the following:: + + @RG Read group. Unordered multiple @RG lines are allowed. + ID Read group identifier. Each @RG line must have a unique ID. The value of + ID is used in the RG tags of alignment records. Must be unique among all + read groups in header section. Read group IDs may be modified when + merging SAM files in order to handle collisions. + CN Name of sequencing center producing the read. + DS Description. + DT Date the run was produced (ISO8601 date or date/time). + FO Flow order. The array of nucleotide bases that correspond to the + nucleotides used for each flow of each read. Multi-base flows are encoded + in IUPAC format, and non-nucleotide flows by various other characters. + Format : /\*|[ACMGRSVTWYHKDBN]+/ + KS The array of nucleotide bases that correspond to the key sequence of each read. + LB Library. + PG Programs used for processing the read group. + PI Predicted median insert size. + PL Platform/technology used to produce the reads. Valid values : CAPILLARY, + LS454, ILLUMINA, SOLID, HELICOS, IONTORRENT and PACBIO. + PU Platform unit (e.g. flowcell-barcode.lane for Illumina or slide for + SOLiD). Unique identifier. + SM Sample. Use pool name where a pool is being sequenced. + + </help> +</tool> + +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bwa_wrapper.py Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,342 @@ +#!/usr/bin/env python + +""" +Runs BWA on single-end or paired-end data. +Produces a SAM file containing the mappings. +Works with BWA version 0.5.9. + +usage: bwa_wrapper.py [options] + +See below for options +""" + +import optparse, os, shutil, subprocess, sys, tempfile + +def stop_err( msg ): + sys.stderr.write( '%s\n' % msg ) + sys.exit() + +def check_is_double_encoded( fastq ): + # check that first read is bases, not one base followed by numbers + bases = [ 'A', 'C', 'G', 'T', 'a', 'c', 'g', 't', 'N' ] + nums = [ '0', '1', '2', '3' ] + for line in file( fastq, 'rb'): + if not line.strip() or line.startswith( '@' ): + continue + if len( [ b for b in line.strip() if b in nums ] ) > 0: + return False + elif line.strip()[0] in bases and len( [ b for b in line.strip() if b in bases ] ) == len( line.strip() ): + return True + else: + raise Exception, 'First line in first read does not appear to be a valid FASTQ read in either base-space or color-space' + raise Exception, 'There is no non-comment and non-blank line in your FASTQ file' + +def __main__(): + #Parse Command Line + parser = optparse.OptionParser() + parser.add_option( '-t', '--threads', dest='threads', help='The number of threads to use' ) + parser.add_option( '-c', '--color-space', dest='color_space', action='store_true', help='If the input files are SOLiD format' ) + parser.add_option( '-r', '--ref', dest='ref', help='The reference genome to use or index' ) + parser.add_option( '-f', '--input1', dest='fastq', help='The (forward) fastq file to use for the mapping' ) + parser.add_option( '-F', '--input2', dest='rfastq', help='The reverse fastq file to use for mapping if paired-end data' ) + parser.add_option( '-u', '--output', dest='output', help='The file to save the output (SAM format)' ) + parser.add_option( '-g', '--genAlignType', dest='genAlignType', help='The type of pairing (single or paired)' ) + parser.add_option( '-p', '--params', dest='params', help='Parameter setting to use (pre_set or full)' ) + parser.add_option( '-s', '--fileSource', dest='fileSource', help='Whether to use a previously indexed reference sequence or one form history (indexed or history)' ) + parser.add_option( '-n', '--maxEditDist', dest='maxEditDist', help='Maximum edit distance if integer' ) + parser.add_option( '-m', '--fracMissingAligns', dest='fracMissingAligns', help='Fraction of missing alignments given 2% uniform base error rate if fraction' ) + parser.add_option( '-o', '--maxGapOpens', dest='maxGapOpens', help='Maximum number of gap opens' ) + parser.add_option( '-e', '--maxGapExtens', dest='maxGapExtens', help='Maximum number of gap extensions' ) + parser.add_option( '-d', '--disallowLongDel', dest='disallowLongDel', help='Disallow a long deletion within specified bps' ) + parser.add_option( '-i', '--disallowIndel', dest='disallowIndel', help='Disallow indel within specified bps' ) + parser.add_option( '-l', '--seed', dest='seed', help='Take the first specified subsequences' ) + parser.add_option( '-k', '--maxEditDistSeed', dest='maxEditDistSeed', help='Maximum edit distance to the seed' ) + parser.add_option( '-M', '--mismatchPenalty', dest='mismatchPenalty', help='Mismatch penalty' ) + parser.add_option( '-O', '--gapOpenPenalty', dest='gapOpenPenalty', help='Gap open penalty' ) + parser.add_option( '-E', '--gapExtensPenalty', dest='gapExtensPenalty', help='Gap extension penalty' ) + parser.add_option( '-R', '--suboptAlign', dest='suboptAlign', default=None, help='Proceed with suboptimal alignments even if the top hit is a repeat' ) + parser.add_option( '-N', '--noIterSearch', dest='noIterSearch', help='Disable iterative search' ) + parser.add_option( '-T', '--outputTopN', dest='outputTopN', help='Maximum number of alignments to output in the XA tag for reads paired properly' ) + parser.add_option( '', '--outputTopNDisc', dest='outputTopNDisc', help='Maximum number of alignments to output in the XA tag for disconcordant read pairs (excluding singletons)' ) + parser.add_option( '-S', '--maxInsertSize', dest='maxInsertSize', help='Maximum insert size for a read pair to be considered mapped good' ) + parser.add_option( '-P', '--maxOccurPairing', dest='maxOccurPairing', help='Maximum occurrences of a read for pairings' ) + parser.add_option( '', '--rgid', dest='rgid', help='Read group identifier' ) + parser.add_option( '', '--rgcn', dest='rgcn', help='Sequencing center that produced the read' ) + parser.add_option( '', '--rgds', dest='rgds', help='Description' ) + parser.add_option( '', '--rgdt', dest='rgdt', help='Date that run was produced (ISO8601 format date or date/time, like YYYY-MM-DD)' ) + parser.add_option( '', '--rgfo', dest='rgfo', help='Flow order' ) + parser.add_option( '', '--rgks', dest='rgks', help='The array of nucleotide bases that correspond to the key sequence of each read' ) + parser.add_option( '', '--rglb', dest='rglb', help='Library name' ) + parser.add_option( '', '--rgpg', dest='rgpg', help='Programs used for processing the read group' ) + parser.add_option( '', '--rgpi', dest='rgpi', help='Predicted median insert size' ) + parser.add_option( '', '--rgpl', dest='rgpl', choices=[ 'CAPILLARY', 'LS454', 'ILLUMINA', 'SOLID', 'HELICOS', 'IONTORRENT' and 'PACBIO' ], help='Platform/technology used to produce the reads' ) + parser.add_option( '', '--rgpu', dest='rgpu', help='Platform unit (e.g. flowcell-barcode.lane for Illumina or slide for SOLiD)' ) + parser.add_option( '', '--rgsm', dest='rgsm', help='Sample' ) + parser.add_option( '-D', '--dbkey', dest='dbkey', help='Dbkey for reference genome' ) + parser.add_option( '-X', '--do_not_build_index', dest='do_not_build_index', action='store_true', help="Don't build index" ) + parser.add_option( '-H', '--suppressHeader', dest='suppressHeader', help='Suppress header' ) + parser.add_option( '-I', '--illumina1.3', dest='illumina13qual', help='Input FASTQ files have Illuina 1.3 quality scores' ) + (options, args) = parser.parse_args() + + # output version # of tool + try: + tmp = tempfile.NamedTemporaryFile().name + tmp_stdout = open( tmp, 'wb' ) + proc = subprocess.Popen( args='bwa 2>&1', shell=True, stdout=tmp_stdout ) + tmp_stdout.close() + returncode = proc.wait() + stdout = None + for line in open( tmp_stdout.name, 'rb' ): + if line.lower().find( 'version' ) >= 0: + stdout = line.strip() + break + if stdout: + sys.stdout.write( 'BWA %s\n' % stdout ) + else: + raise Exception + except: + sys.stdout.write( 'Could not determine BWA version\n' ) + + # check for color space fastq that's not double-encoded and exit if appropriate + if options.color_space: + if not check_is_double_encoded( options.fastq ): + stop_err( 'Your file must be double-encoded (it must be converted from "numbers" to "bases"). See the help section for details' ) + if options.genAlignType == 'paired': + if not check_is_double_encoded( options.rfastq ): + stop_err( 'Your reverse reads file must also be double-encoded (it must be converted from "numbers" to "bases"). See the help section for details' ) + + fastq = options.fastq + if options.rfastq: + rfastq = options.rfastq + + # set color space variable + if options.color_space: + color_space = '-c' + else: + color_space = '' + + # make temp directory for placement of indices + tmp_index_dir = tempfile.mkdtemp() + tmp_dir = tempfile.mkdtemp() + # index if necessary + if options.fileSource == 'history' and not options.do_not_build_index: + ref_file = tempfile.NamedTemporaryFile( dir=tmp_index_dir ) + ref_file_name = ref_file.name + ref_file.close() + os.symlink( options.ref, ref_file_name ) + # determine which indexing algorithm to use, based on size + try: + size = os.stat( options.ref ).st_size + if size <= 2**30: + indexingAlg = 'is' + else: + indexingAlg = 'bwtsw' + except: + indexingAlg = 'is' + indexing_cmds = '%s -a %s' % ( color_space, indexingAlg ) + cmd1 = 'bwa index %s %s' % ( indexing_cmds, ref_file_name ) + try: + tmp = tempfile.NamedTemporaryFile( dir=tmp_index_dir ).name + tmp_stderr = open( tmp, 'wb' ) + proc = subprocess.Popen( args=cmd1, shell=True, cwd=tmp_index_dir, stderr=tmp_stderr.fileno() ) + returncode = proc.wait() + tmp_stderr.close() + # get stderr, allowing for case where it's very large + tmp_stderr = open( tmp, 'rb' ) + stderr = '' + buffsize = 1048576 + try: + while True: + stderr += tmp_stderr.read( buffsize ) + if not stderr or len( stderr ) % buffsize != 0: + break + except OverflowError: + pass + tmp_stderr.close() + if returncode != 0: + raise Exception, stderr + except Exception, e: + # clean up temp dirs + if os.path.exists( tmp_index_dir ): + shutil.rmtree( tmp_index_dir ) + if os.path.exists( tmp_dir ): + shutil.rmtree( tmp_dir ) + stop_err( 'Error indexing reference sequence. ' + str( e ) ) + else: + ref_file_name = options.ref + if options.illumina13qual: + illumina_quals = "-I" + else: + illumina_quals = "" + + # set up aligning and generate aligning command options + if options.params == 'pre_set': + aligning_cmds = '-t %s %s %s' % ( options.threads, color_space, illumina_quals ) + gen_alignment_cmds = '' + else: + if options.maxEditDist != '0': + editDist = options.maxEditDist + else: + editDist = options.fracMissingAligns + if options.seed != '-1': + seed = '-l %s' % options.seed + else: + seed = '' + if options.suboptAlign: + suboptAlign = '-R "%s"' % ( options.suboptAlign ) + else: + suboptAlign = '' + if options.noIterSearch == 'true': + noIterSearch = '-N' + else: + noIterSearch = '' + aligning_cmds = '-n %s -o %s -e %s -d %s -i %s %s -k %s -t %s -M %s -O %s -E %s %s %s %s %s' % \ + ( editDist, options.maxGapOpens, options.maxGapExtens, options.disallowLongDel, + options.disallowIndel, seed, options.maxEditDistSeed, options.threads, + options.mismatchPenalty, options.gapOpenPenalty, options.gapExtensPenalty, + suboptAlign, noIterSearch, color_space, illumina_quals ) + if options.genAlignType == 'paired': + gen_alignment_cmds = '-a %s -o %s' % ( options.maxInsertSize, options.maxOccurPairing ) + if options.outputTopNDisc: + gen_alignment_cmds += ' -N %s' % options.outputTopNDisc + else: + gen_alignment_cmds = '' + if options.rgid: + if not options.rglb or not options.rgpl or not options.rgsm: + stop_err( 'If you want to specify read groups, you must include the ID, LB, PL, and SM tags.' ) + readGroup = '@RG\tID:%s\tLB:%s\tPL:%s\tSM:%s' % ( options.rgid, options.rglb, options.rgpl, options.rgsm ) + if options.rgcn: + readGroup += '\tCN:%s' % options.rgcn + if options.rgds: + readGroup += '\tDS:%s' % options.rgds + if options.rgdt: + readGroup += '\tDT:%s' % options.rgdt + if options.rgfo: + readGroup += '\tFO:%s' % options.rgfo + if options.rgks: + readGroup += '\tKS:%s' % options.rgks + if options.rgpg: + readGroup += '\tPG:%s' % options.rgpg + if options.rgpi: + readGroup += '\tPI:%s' % options.rgpi + if options.rgpu: + readGroup += '\tPU:%s' % options.rgpu + gen_alignment_cmds += ' -r "%s"' % readGroup + if options.outputTopN: + gen_alignment_cmds += ' -n %s' % options.outputTopN + # set up output files + tmp_align_out = tempfile.NamedTemporaryFile( dir=tmp_dir ) + tmp_align_out_name = tmp_align_out.name + tmp_align_out.close() + tmp_align_out2 = tempfile.NamedTemporaryFile( dir=tmp_dir ) + tmp_align_out2_name = tmp_align_out2.name + tmp_align_out2.close() + # prepare actual aligning and generate aligning commands + cmd2 = 'bwa aln %s %s %s > %s' % ( aligning_cmds, ref_file_name, fastq, tmp_align_out_name ) + cmd2b = '' + if options.genAlignType == 'paired': + cmd2b = 'bwa aln %s %s %s > %s' % ( aligning_cmds, ref_file_name, rfastq, tmp_align_out2_name ) + cmd3 = 'bwa sampe %s %s %s %s %s %s >> %s' % ( gen_alignment_cmds, ref_file_name, tmp_align_out_name, tmp_align_out2_name, fastq, rfastq, options.output ) + else: + cmd3 = 'bwa samse %s %s %s %s >> %s' % ( gen_alignment_cmds, ref_file_name, tmp_align_out_name, fastq, options.output ) + # perform alignments + buffsize = 1048576 + try: + # need to nest try-except in try-finally to handle 2.4 + try: + # align + try: + tmp = tempfile.NamedTemporaryFile( dir=tmp_dir ).name + tmp_stderr = open( tmp, 'wb' ) + proc = subprocess.Popen( args=cmd2, shell=True, cwd=tmp_dir, stderr=tmp_stderr.fileno() ) + returncode = proc.wait() + tmp_stderr.close() + # get stderr, allowing for case where it's very large + tmp_stderr = open( tmp, 'rb' ) + stderr = '' + try: + while True: + stderr += tmp_stderr.read( buffsize ) + if not stderr or len( stderr ) % buffsize != 0: + break + except OverflowError: + pass + tmp_stderr.close() + if returncode != 0: + raise Exception, stderr + except Exception, e: + raise Exception, 'Error aligning sequence. ' + str( e ) + # and again if paired data + try: + if cmd2b: + tmp = tempfile.NamedTemporaryFile( dir=tmp_dir ).name + tmp_stderr = open( tmp, 'wb' ) + proc = subprocess.Popen( args=cmd2b, shell=True, cwd=tmp_dir, stderr=tmp_stderr.fileno() ) + returncode = proc.wait() + tmp_stderr.close() + # get stderr, allowing for case where it's very large + tmp_stderr = open( tmp, 'rb' ) + stderr = '' + try: + while True: + stderr += tmp_stderr.read( buffsize ) + if not stderr or len( stderr ) % buffsize != 0: + break + except OverflowError: + pass + tmp_stderr.close() + if returncode != 0: + raise Exception, stderr + except Exception, e: + raise Exception, 'Error aligning second sequence. ' + str( e ) + # generate align + try: + tmp = tempfile.NamedTemporaryFile( dir=tmp_dir ).name + tmp_stderr = open( tmp, 'wb' ) + proc = subprocess.Popen( args=cmd3, shell=True, cwd=tmp_dir, stderr=tmp_stderr.fileno() ) + returncode = proc.wait() + tmp_stderr.close() + # get stderr, allowing for case where it's very large + tmp_stderr = open( tmp, 'rb' ) + stderr = '' + try: + while True: + stderr += tmp_stderr.read( buffsize ) + if not stderr or len( stderr ) % buffsize != 0: + break + except OverflowError: + pass + tmp_stderr.close() + if returncode != 0: + raise Exception, stderr + except Exception, e: + raise Exception, 'Error generating alignments. ' + str( e ) + # remove header if necessary + if options.suppressHeader == 'true': + tmp_out = tempfile.NamedTemporaryFile( dir=tmp_dir) + tmp_out_name = tmp_out.name + tmp_out.close() + try: + shutil.move( options.output, tmp_out_name ) + except Exception, e: + raise Exception, 'Error moving output file before removing headers. ' + str( e ) + fout = file( options.output, 'w' ) + for line in file( tmp_out.name, 'r' ): + if not ( line.startswith( '@HD' ) or line.startswith( '@SQ' ) or line.startswith( '@RG' ) or line.startswith( '@PG' ) or line.startswith( '@CO' ) ): + fout.write( line ) + fout.close() + # check that there are results in the output file + if os.path.getsize( options.output ) > 0: + sys.stdout.write( 'BWA run on %s-end data' % options.genAlignType ) + else: + raise Exception, 'The output file is empty. You may simply have no matches, or there may be an error with your input file or settings.' + except Exception, e: + stop_err( 'The alignment failed.\n' + str( e ) ) + finally: + # clean up temp dir + if os.path.exists( tmp_index_dir ): + shutil.rmtree( tmp_index_dir ) + if os.path.exists( tmp_dir ): + shutil.rmtree( tmp_dir ) + +if __name__=="__main__": __main__()
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bwa_wrapper.xml Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,474 @@ +<tool id="bwa_wrapper" name="Map with BWA for Illumina" version="1.2.3"> + <requirements> + <requirement type="package" version="0.5.9">bwa</requirement> + </requirements> + <description></description> + <parallelism method="basic"></parallelism> + <command interpreter="python"> + bwa_wrapper.py + --threads="4" + + #if $input1.ext == "fastqillumina": + --illumina1.3 + #end if + + ## reference source + --fileSource=$genomeSource.refGenomeSource + #if $genomeSource.refGenomeSource == "history": + ##build index on the fly + --ref="${genomeSource.ownFile}" + --dbkey=$dbkey + #else: + ##use precomputed indexes + --ref="${genomeSource.indices.fields.path}" + --do_not_build_index + #end if + + ## input file(s) + --input1=$paired.input1 + #if $paired.sPaired == "paired": + --input2=$paired.input2 + #end if + + ## output file + --output=$output + + ## run parameters + --genAlignType=$paired.sPaired + --params=$params.source_select + #if $params.source_select != "pre_set": + --maxEditDist=$params.maxEditDist + --fracMissingAligns=$params.fracMissingAligns + --maxGapOpens=$params.maxGapOpens + --maxGapExtens=$params.maxGapExtens + --disallowLongDel=$params.disallowLongDel + --disallowIndel=$params.disallowIndel + --seed=$params.seed + --maxEditDistSeed=$params.maxEditDistSeed + --mismatchPenalty=$params.mismatchPenalty + --gapOpenPenalty=$params.gapOpenPenalty + --gapExtensPenalty=$params.gapExtensPenalty + --suboptAlign="${params.suboptAlign}" + --noIterSearch=$params.noIterSearch + --outputTopN=$params.outputTopN + --outputTopNDisc=$params.outputTopNDisc + --maxInsertSize=$params.maxInsertSize + --maxOccurPairing=$params.maxOccurPairing + #if $params.readGroup.specReadGroup == "yes" + --rgid="$params.readGroup.rgid" + --rgcn="$params.readGroup.rgcn" + --rgds="$params.readGroup.rgds" + --rgdt="$params.readGroup.rgdt" + --rgfo="$params.readGroup.rgfo" + --rgks="$params.readGroup.rgks" + --rglb="$params.readGroup.rglb" + --rgpg="$params.readGroup.rgpg" + --rgpi="$params.readGroup.rgpi" + --rgpl="$params.readGroup.rgpl" + --rgpu="$params.readGroup.rgpu" + --rgsm="$params.readGroup.rgsm" + #end if + #end if + + ## suppress output SAM header + --suppressHeader=$suppressHeader + </command> + <inputs> + <conditional name="genomeSource"> + <param name="refGenomeSource" type="select" label="Will you select a reference genome from your history or use a built-in index?"> + <option value="indexed">Use a built-in index</option> + <option value="history">Use one from the history</option> + </param> + <when value="indexed"> + <param name="indices" type="select" label="Select a reference genome"> + <options from_data_table="bwa_indexes"> + <filter type="sort_by" column="2" /> + <validator type="no_options" message="No indexes are available" /> + </options> + </param> + </when> + <when value="history"> + <param name="ownFile" type="data" format="fasta" metadata_name="dbkey" label="Select a reference from history" /> + </when> + </conditional> + <conditional name="paired"> + <param name="sPaired" type="select" label="Is this library mate-paired?"> + <option value="single">Single-end</option> + <option value="paired">Paired-end</option> + </param> + <when value="single"> + <param name="input1" type="data" format="fastqsanger,fastqillumina" label="FASTQ file" help="FASTQ with either Sanger-scaled quality values (fastqsanger) or Illumina-scaled quality values (fastqillumina)" /> + </when> + <when value="paired"> + <param name="input1" type="data" format="fastqsanger,fastqillumina" label="Forward FASTQ file" help="FASTQ with either Sanger-scaled quality values (fastqsanger) or Illumina-scaled quality values (fastqillumina)" /> + <param name="input2" type="data" format="fastqsanger,fastqillumina" label="Reverse FASTQ file" help="FASTQ with either Sanger-scaled quality values (fastqsanger) or Illumina-scaled quality values (fastqillumina)" /> + </when> + </conditional> + <conditional name="params"> + <param name="source_select" type="select" label="BWA settings to use" help="For most mapping needs use Commonly Used settings. If you want full control use Full Parameter List"> + <option value="pre_set">Commonly Used</option> + <option value="full">Full Parameter List</option> + </param> + <when value="pre_set" /> + <when value="full"> + <param name="maxEditDist" type="integer" value="0" label="Maximum edit distance (aln -n)" help="Enter this value OR a fraction of missing alignments, not both" /> + <param name="fracMissingAligns" type="float" value="0.04" label="Fraction of missing alignments given 2% uniform base error rate (aln -n)" help="Enter this value OR maximum edit distance, not both" /> + <param name="maxGapOpens" type="integer" value="1" label="Maximum number of gap opens (aln -o)" /> + <param name="maxGapExtens" type="integer" value="-1" label="Maximum number of gap extensions (aln -e)" help="-1 for k-difference mode (disallowing long gaps)" /> + <param name="disallowLongDel" type="integer" value="16" label="Disallow long deletion within [value] bp towards the 3'-end (aln -d)" /> + <param name="disallowIndel" type="integer" value="5" label="Disallow insertion/deletion within [value] bp towards the end (aln -i)" /> + <param name="seed" type="integer" value="-1" label="Number of first subsequences to take as seed (aln -l)" help="Enter -1 for infinity" /> + <param name="maxEditDistSeed" type="integer" value="2" label="Maximum edit distance in the seed (aln -k)" /> + <param name="mismatchPenalty" type="integer" value="3" label="Mismatch penalty (aln -M)" help="BWA will not search for suboptimal hits with a score lower than [value]" /> + <param name="gapOpenPenalty" type="integer" value="11" label="Gap open penalty (aln -O)" /> + <param name="gapExtensPenalty" type="integer" value="4" label="Gap extension penalty (aln -E)" /> + <param name="suboptAlign" type="integer" optional="True" label="Proceed with suboptimal alignments if there are no more than INT equally best hits. (aln -R)" help="For paired-end reads only. By default, BWA only searches for suboptimal alignments if the top hit is unique. Using this option has no effect on accuracy for single-end reads. It is mainly designed for improving the alignment accuracy of paired-end reads. However, the pairing procedure will be slowed down, especially for very short reads (~32bp)" /> + <param name="noIterSearch" type="boolean" truevalue="true" falsevalue="false" checked="no" label="Disable iterative search (aln -N)" help="All hits with no more than maxDiff differences will be found. This mode is much slower than the default" /> + <param name="outputTopN" type="integer" value="3" label="Maximum number of alignments to output in the XA tag for reads paired properly (samse/sampe -n)" help="If a read has more than INT hits, the XA tag will not be written" /> + <param name="outputTopNDisc" type="integer" value="10" label="Maximum number of alignments to output in the XA tag for disconcordant read pairs (excluding singletons) (sampe -N)" help="For paired-end reads only. If a read has more than INT hits, the XA tag will not be written" /> + <param name="maxInsertSize" type="integer" value="500" label="Maximum insert size for a read pair to be considered as being mapped properly (sampe -a)" help="For paired-end reads only. Only used when there are not enough good alignments to infer the distribution of insert sizes" /> + <param name="maxOccurPairing" type="integer" value="100000" label="Maximum occurrences of a read for pairing (sampe -o)" help="For paired-end reads only. A read with more occurrences will be treated as a single-end read. Reducing this parameter helps faster pairing" /> + <conditional name="readGroup"> + <param name="specReadGroup" type="select" label="Specify the read group for this file? (samse/sampe -r)"> + <option value="yes">Yes</option> + <option value="no" selected="True">No</option> + </param> + <when value="yes"> + <param name="rgid" type="text" size="25" label="Read group identifier (ID). Each @RG line must have a unique ID. The value of ID is used in the RG +tags of alignment records. Must be unique among all read groups in header section." help="Required if RG specified. Read group +IDs may be modified when merging SAM files in order to handle collisions." /> + <param name="rgcn" type="text" size="25" label="Sequencing center that produced the read (CN)" help="Optional" /> + <param name="rgds" type="text" size="25" label="Description (DS)" help="Optional" /> + <param name="rgdt" type="text" size="25" label="Date that run was produced (DT)" help="Optional. ISO8601 format date or date/time, like YYYY-MM-DD" /> + <param name="rgfo" type="text" size="25" label="Flow order (FO). The array of nucleotide bases that correspond to the nucleotides used for each +flow of each read." help="Optional. Multi-base flows are encoded in IUPAC format, and non-nucleotide flows by +various other characters. Format : /\*|[ACMGRSVTWYHKDBN]+/" /> + <param name="rgks" type="text" size="25" label="The array of nucleotide bases that correspond to the key sequence of each read (KS)" help="Optional" /> + <param name="rglb" type="text" size="25" label="Library name (LB)" help="Required if RG specified" /> + <param name="rgpg" type="text" size="25" label="Programs used for processing the read group (PG)" help="Optional" /> + <param name="rgpi" type="text" size="25" label="Predicted median insert size (PI)" help="Optional" /> + <param name="rgpl" type="text" size="25" label="Platform/technology used to produce the reads (PL)" help="Required if RG specified. Valid values : CAPILLARY, LS454, ILLUMINA, +SOLID, HELICOS, IONTORRENT and PACBIO" /> + <param name="rgpu" type="text" size="25" label="Platform unit (PU)" help="Optional. Unique identifier (e.g. flowcell-barcode.lane for Illumina or slide for SOLiD)" /> + <param name="rgsm" type="text" size="25" label="Sample (SM)" help="Required if RG specified. Use pool name where a pool is being sequenced" /> + </when> + <when value="no" /> + </conditional> + </when> + </conditional> + <param name="suppressHeader" type="boolean" truevalue="true" falsevalue="false" checked="False" label="Suppress the header in the output SAM file" help="BWA produces SAM with several lines of header information" /> + </inputs> + <outputs> + <data format="sam" name="output" label="${tool.name} on ${on_string}: mapped reads"> + <actions> + <conditional name="genomeSource.refGenomeSource"> + <when value="indexed"> + <action type="metadata" name="dbkey"> + <option type="from_data_table" name="bwa_indexes" column="1"> + <filter type="param_value" column="0" value="#" compare="startswith" keep="False"/> + <filter type="param_value" ref="genomeSource.indices" column="0"/> + </option> + </action> + </when> + <when value="history"> + <action type="metadata" name="dbkey"> + <option type="from_param" name="genomeSource.ownFile" param_attribute="dbkey" /> + </action> + </when> + </conditional> + </actions> + </data> + </outputs> + <tests> + <test> + <!-- + BWA commands: + bwa aln -t 4 phiX.fasta test-data/bwa_wrapper_in1.fastqsanger > bwa_wrapper_out1.sai + bwa samse phiX.fasta bwa_wrapper_out1.sai test-data/bwa_wrapper_in1.fastqsanger > bwa_wrapper_out1.sam + phiX.fasta is the prefix for the reference files (phiX.fasta.amb, phiX.fasta.ann, phiX.fasta.bwt, ...) + remove the comment lines (beginning with '@') from the resulting sam file + plain old sort doesn't handle underscores like python: + python -c "import sys; lines=file(sys.argv[1],'rb').readlines(); lines.sort(); file(sys.argv[2],'wb').write(''.join(lines))" bwa_wrapper_out1.u.sam bwa_wrapper_out1.sam + --> + <param name="refGenomeSource" value="indexed" /> + <param name="indices" value="phiX" /> + <param name="sPaired" value="single" /> + <param name="input1" value="bwa_wrapper_in1.fastqsanger" ftype="fastqsanger" /> + <param name="source_select" value="pre_set" /> + <param name="suppressHeader" value="true" /> + <output name="output" file="bwa_wrapper_out1.sam" ftype="sam" sort="True" /> + </test> + <test> + <!-- + BWA commands: + cp test-data/phiX.fasta phiX.fasta + bwa index -a is phiX.fasta + bwa aln -n 0.04 -o 1 -e -1 -d 16 -i 5 -k 2 -t 4 -M 3 -O 11 -E 4 -R -N phiX.fasta test-data/bwa_wrapper_in1.fastqsanger > bwa_wrapper_out2.sai + bwa samse -n 3 phiX.fasta bwa_wrapper_out2.sai test-data/bwa_wrapper_in1.fastqsanger > bwa_wrapper_out2.u.sam + phiX.fasta is the prefix for the reference files (phiX.fasta.amb, phiX.fasta.ann, phiX.fasta.bwt, ...) + remove the comment lines (beginning with '@') from the resulting sam file + plain old sort doesn't handle underscores like python: + python -c "import sys; lines=file(sys.argv[1],'rb').readlines(); lines.sort(); file(sys.argv[2],'wb').write(''.join(lines))" bwa_wrapper_out2.u.sam bwa_wrapper_out2.sam + --> + <param name="refGenomeSource" value="history" /> + <param name="ownFile" value="phiX.fasta" /> + <param name="sPaired" value="single" /> + <param name="input1" value="bwa_wrapper_in1.fastqsanger" ftype="fastqsanger" /> + <param name="source_select" value="full" /> + <param name="maxEditDist" value="0" /> + <param name="fracMissingAligns" value="0.04" /> + <param name="maxGapOpens" value="1" /> + <param name="maxGapExtens" value="-1" /> + <param name="disallowLongDel" value="16" /> + <param name="disallowIndel" value="5" /> + <param name="seed" value="-1" /> + <param name="maxEditDistSeed" value="2" /> + <param name="mismatchPenalty" value="3" /> + <param name="gapOpenPenalty" value="11" /> + <param name="gapExtensPenalty" value="4" /> + <param name="suboptAlign" value="" /> + <param name="noIterSearch" value="true" /> + <param name="outputTopN" value="3" /> + <param name="outputTopNDisc" value="10" /> + <param name="maxInsertSize" value="500" /> + <param name="maxOccurPairing" value="100000" /> + <param name="specReadGroup" value="no" /> + <param name="suppressHeader" value="true" /> + <output name="output" file="bwa_wrapper_out2.sam" ftype="sam" sort="True" /> + </test> + <test> + <!-- + BWA commands: + bwa aln -n 0.04 -o 1 -e -1 -d 16 -i 5 -k 2 -t 4 -M 3 -O 11 -E 4 -R -N phiX.fasta test-data/bwa_wrapper_in2.fastqsanger > bwa_wrapper_out3a.sai + bwa aln -n 0.04 -o 1 -e -1 -d 16 -i 5 -k 2 -t 4 -M 3 -O 11 -E 4 -R -N phiX.fasta test-data/bwa_wrapper_in3.fastqsanger > bwa_wrapper_out3b.sai + bwa sampe -a 500 -o 100000 -n 3 -N 10 -r "@RG\tID:abcdefg\tDS:descrip\tDT:2010-11-01\tLB:lib-mom-A\tPI:400\tPL:ILLUMINA\tSM:mom" phiX.fasta bwa_wrapper_out3a.sai bwa_wrapper_out3b.sai test-data/bwa_wrapper_in2.fastqsanger test-data/bwa_wrapper_in3.fastqsanger > bwa_wrapper_out3.u.sam + phiX.fasta is the prefix for the reference + plain old sort doesn't handle underscores like python: + python -c "import sys; lines=file(sys.argv[1],'rb').readlines(); lines.sort(); file(sys.argv[2],'wb').write(''.join(lines))" bwa_wrapper_out3.u.sam bwa_wrapper_out3.sam + --> + <param name="refGenomeSource" value="indexed" /> + <param name="indices" value="phiX" /> + <param name="sPaired" value="paired" /> + <param name="input1" value="bwa_wrapper_in2.fastqsanger" ftype="fastqsanger" /> + <param name="input2" value="bwa_wrapper_in3.fastqsanger" ftype="fastqsanger" /> + <param name="source_select" value="full" /> + <param name="maxEditDist" value="0" /> + <param name="fracMissingAligns" value="0.04" /> + <param name="maxGapOpens" value="1" /> + <param name="maxGapExtens" value="-1" /> + <param name="disallowLongDel" value="16" /> + <param name="disallowIndel" value="5" /> + <param name="seed" value="-1" /> + <param name="maxEditDistSeed" value="2" /> + <param name="mismatchPenalty" value="3" /> + <param name="gapOpenPenalty" value="11" /> + <param name="gapExtensPenalty" value="4" /> + <param name="suboptAlign" value="" /> + <param name="noIterSearch" value="true" /> + <param name="outputTopN" value="3" /> + <param name="outputTopNDisc" value="10" /> + <param name="maxInsertSize" value="500" /> + <param name="maxOccurPairing" value="100000" /> + <param name="specReadGroup" value="yes" /> + <param name="rgid" value="abcdefg" /> + <param name="rgcn" value="" /> + <param name="rgds" value="descrip" /> + <param name="rgdt" value="2010-11-01" /> + <param name="rgfo" value="" /> + <param name="rgks" value="" /> + <param name="rglb" value="lib-mom-A" /> + <param name="rgpg" value="" /> + <param name="rgpi" value="400" /> + <param name="rgpl" value="ILLUMINA" /> + <param name="rgpu" value="" /> + <param name="rgsm" value="mom" /> + <param name="suppressHeader" value="false" /> + <output name="output" file="bwa_wrapper_out3.sam" ftype="sam" sort="True" lines_diff="2" /> + </test> + <test> + <!-- + BWA commands: + cp test-data/phiX.fasta phiX.fasta + bwa index -a is phiX.fasta + bwa aln -t 4 phiX.fasta test-data/bwa_wrapper_in2.fastqsanger > bwa_wrapper_out8a.sai + bwa aln -t 4 phiX.fasta test-data/bwa_wrapper_in3.fastqsanger > bwa_wrapper_out8b.sai + bwa sampe -a 500 -o 100000 phiX.fasta bwa_wrapper_out8a.sai bwa_wrapper_out8b.sai test-data/bwa_wrapper_in2.fastqsanger test-data/bwa_wrapper_in3.fastqsanger > bwa_wrapper_out8.u.sam + phiX.fa is the prefix for the reference + remove the comment lines (beginning with '@') from the resulting sam file + python -c "import sys; lines=file(sys.argv[1],'rb').readlines(); lines.sort(); file(sys.argv[2],'wb').write(''.join(lines))" bwa_wrapper_out8.u.sam bwa_wrapper_out8.sam + --> + <param name="refGenomeSource" value="history" /> + <!-- this is the backwards-compatible "unique value" for this index, not an actual path --> + <param name="ownFile" value="phiX.fasta" /> + <param name="sPaired" value="paired" /> + <param name="input1" value="bwa_wrapper_in2.fastqsanger" ftype="fastqsanger" /> + <param name="input2" value="bwa_wrapper_in3.fastqsanger" ftype="fastqsanger" /> + <param name="source_select" value="preSet" /> + <param name="suppressHeader" value="true" /> + <output name="output" file="bwa_wrapper_out8.sam" ftype="sam" sort="True" /> + </test> + </tests> + <help> + +**What it does** + +BWA is a fast light-weighted tool that aligns relatively short sequences (queries) to a sequence database (large), such as the human reference genome. It is developed by Heng Li at the Sanger Insitute. Li H. and Durbin R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-60. + +------ + +**Know what you are doing** + +.. class:: warningmark + +There is no such thing (yet) as an automated gearshift in short read mapping. It is all like stick-shift driving in San Francisco. In other words = running this tool with default parameters will probably not give you meaningful results. A way to deal with this is to **understand** the parameters by carefully reading the `documentation`__ and experimenting. Fortunately, Galaxy makes experimenting easy. + + .. __: http://bio-bwa.sourceforge.net/ + +------ + +**Input formats** + +BWA accepts files in either Sanger FASTQ format (galaxy type *fastqsanger*) or Illumina FASTQ format (galaxy type *fastqillumina*). Use the FASTQ Groomer to prepare your files. + +------ + +**A Note on Built-in Reference Genomes** + +The default variant for all genomes is "Full", defined as all primary chromosomes (or scaffolds/contigs) including mitochondrial plus associated unmapped, plasmid, and other segments. When only one version of a genome is available in this tool, it represents the default "Full" variant. Some genomes will have more than one variant available. The "Canonical Male" or sometimes simply "Canonical" variant contains the primary chromosomes for a genome. For example a human "Canonical" variant contains chr1-chr22, chrX, chrY, and chrM. The "Canonical Female" variant contains the primary chromosomes excluding chrY. + +------ + +**Outputs** + +The output is in SAM format, and has the following columns:: + + Column Description + -------- -------------------------------------------------------- + 1 QNAME Query (pair) NAME + 2 FLAG bitwise FLAG + 3 RNAME Reference sequence NAME + 4 POS 1-based leftmost POSition/coordinate of clipped sequence + 5 MAPQ MAPping Quality (Phred-scaled) + 6 CIGAR extended CIGAR string + 7 MRNM Mate Reference sequence NaMe ('=' if same as RNAME) + 8 MPOS 1-based Mate POSition + 9 ISIZE Inferred insert SIZE + 10 SEQ query SEQuence on the same strand as the reference + 11 QUAL query QUALity (ASCII-33 gives the Phred base quality) + 12 OPT variable OPTional fields in the format TAG:VTYPE:VALU + +The flags are as follows:: + + Flag Description + ------ ------------------------------------- + 0x0001 the read is paired in sequencing + 0x0002 the read is mapped in a proper pair + 0x0004 the query sequence itself is unmapped + 0x0008 the mate is unmapped + 0x0010 strand of the query (1 for reverse) + 0x0020 strand of the mate + 0x0040 the read is the first read in a pair + 0x0080 the read is the second read in a pair + 0x0100 the alignment is not primary + +It looks like this (scroll sideways to see the entire example):: + + QNAME FLAG RNAME POS MAPQ CIAGR MRNM MPOS ISIZE SEQ QUAL OPT + HWI-EAS91_1_30788AAXX:1:1:1761:343 4 * 0 0 * * 0 0 AAAAAAANNAAAAAAAAAAAAAAAAAAAAAAAAAAACNNANNGAGTNGNNNNNNNGCTTCCCACAGNNCTGG hhhhhhh;;hhhhhhhhhhh^hOhhhhghhhfhhhgh;;h;;hhhh;h;;;;;;;hhhhhhghhhh;;Phhh + HWI-EAS91_1_30788AAXX:1:1:1578:331 4 * 0 0 * * 0 0 GTATAGANNAATAAGAAAAAAAAAAATGAAGACTTTCNNANNTCTGNANNNNNNNTCTTTTTTCAGNNGTAG hhhhhhh;;hhhhhhhhhhhhhhhhhhhhhhhhhhhh;;h;;hhhh;h;;;;;;;hhhhhhhhhhh;;hhVh + +------- + +**BWA settings** + +All of the options have a default value. You can change any of them. All of the options in BWA have been implemented here. + +------ + +**BWA parameter list** + +This is an exhaustive list of BWA options: + +For **aln**:: + + -n NUM Maximum edit distance if the value is INT, or the fraction of missing + alignments given 2% uniform base error rate if FLOAT. In the latter + case, the maximum edit distance is automatically chosen for different + read lengths. [0.04] + -o INT Maximum number of gap opens [1] + -e INT Maximum number of gap extensions, -1 for k-difference mode + (disallowing long gaps) [-1] + -d INT Disallow a long deletion within INT bp towards the 3'-end [16] + -i INT Disallow an indel within INT bp towards the ends [5] + -l INT Take the first INT subsequence as seed. If INT is larger than the + query sequence, seeding will be disabled. For long reads, this option + is typically ranged from 25 to 35 for '-k 2'. [inf] + -k INT Maximum edit distance in the seed [2] + -t INT Number of threads (multi-threading mode) [1] + -M INT Mismatch penalty. BWA will not search for suboptimal hits with a score + lower than (bestScore-misMsc). [3] + -O INT Gap open penalty [11] + -E INT Gap extension penalty [4] + -c Reverse query but not complement it, which is required for alignment + in the color space. + -R Proceed with suboptimal alignments even if the top hit is a repeat. By + default, BWA only searches for suboptimal alignments if the top hit is + unique. Using this option has no effect on accuracy for single-end + reads. It is mainly designed for improving the alignment accuracy of + paired-end reads. However, the pairing procedure will be slowed down, + especially for very short reads (~32bp). + -N Disable iterative search. All hits with no more than maxDiff + differences will be found. This mode is much slower than the default. + +For **samse**:: + + -n INT Maximum number of alignments to output in the XA tag for reads paired + properly. If a read has more than INT hits, the XA tag will not be + written. [3] + -r STR Specify the read group in a format like '@RG\tID:foo\tSM:bar' [null] + +For **sampe**:: + + -a INT Maximum insert size for a read pair to be considered as being mapped + properly. Since version 0.4.5, this option is only used when there + are not enough good alignment to infer the distribution of insert + sizes. [500] + -n INT Maximum number of alignments to output in the XA tag for reads paired + properly. If a read has more than INT hits, the XA tag will not be + written. [3] + -N INT Maximum number of alignments to output in the XA tag for disconcordant + read pairs (excluding singletons). If a read has more than INT hits, + the XA tag will not be written. [10] + -o INT Maximum occurrences of a read for pairing. A read with more + occurrences will be treated as a single-end read. Reducing this + parameter helps faster pairing. [100000] + -r STR Specify the read group in a format like '@RG\tID:foo\tSM:bar' [null] + +For specifying the read group in **samse** or **sampe**, use the following:: + + @RG Read group. Unordered multiple @RG lines are allowed. + ID Read group identifier. Each @RG line must have a unique ID. The value of + ID is used in the RG tags of alignment records. Must be unique among all + read groups in header section. Read group IDs may be modified when + merging SAM files in order to handle collisions. + CN Name of sequencing center producing the read. + DS Description. + DT Date the run was produced (ISO8601 date or date/time). + FO Flow order. The array of nucleotide bases that correspond to the + nucleotides used for each flow of each read. Multi-base flows are encoded + in IUPAC format, and non-nucleotide flows by various other characters. + Format : /\*|[ACMGRSVTWYHKDBN]+/ + KS The array of nucleotide bases that correspond to the key sequence of each read. + LB Library. + PG Programs used for processing the read group. + PI Predicted median insert size. + PL Platform/technology used to produce the reads. Valid values : CAPILLARY, + LS454, ILLUMINA, SOLID, HELICOS, IONTORRENT and PACBIO. + PU Platform unit (e.g. flowcell-barcode.lane for Illumina or slide for + SOLiD). Unique identifier. + SM Sample. Use pool name where a pool is being sequenced. + + </help> +</tool> + +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bwa_wrapper_in1.fastqsanger Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,120 @@ +@seq1 +GGACTCAGATAGTAATCCACGCTCCTTTAAAATATC ++ +II#IIIIIII$5+.(9IIIIIII$%*$G$A31I&&B +@seq2 +ATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTA ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq3 +GTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTG ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq4 +AGCCGCTCGTCTTTTATGTAGGTGGTCAACCATTTT ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq5 +CAGTTATATGGCTTTTGGTTTCTATGTGGCTTAATA ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq6 +AGGCGCTCGTCTTGGTATGTAGGTGGTCAACAATTT ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq7 +TGTAGGTGGTCAACCAATTTTAATTGCAGGGGCTTC ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq8 +ACACCCGTCCTTTACGTCATGCGCTCTATTCTCTGG ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq9 +GCCGCTATTCAGGTTGTTTTCTGTTGGTGCTGATAT ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq10 +ATTCTTTCTTTTCGTATCAGGGCGTTGAGTTCGATA ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq11 +GCATTTCTACTCCTTCTCATCCCCAATGCTTGGCTT ++ +II#IIIIIII$5+.(9IIIIIII$%*$G$A31I&&B +@seq12 +CGCGCTTCGATAAAAATGGGATTGGCGTTTCCAACC ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq13 +ATTTCTACTCTTTCTCATCCCCAATCCTTGCCTTCC ++ +IIIIIIIIIIIIIIIIIIIIIAAIIIIIIIIIIIII +@seq14 +CCCTTTTGAATGTCACGCTGATATTTTGACTTTGAG ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq15 +CCAACTTACCAAGGTGGGTTACGAAACGCGACGCCG ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq16 +TCAGGGTATTAAAAGAGATTATTTTTCTCCAGCCAC ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq17 +GTGATGTGCTTGCTACCGAAACAATACTTTAGGCAT ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq18 +TCAATCCCCCATGCTTGGCCGTTCCATAAGCAGATG ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq19 +TTCCTGCGCTTAATGCTTGAGCGTCCTGGTGCTGAT ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq20 +CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq21 +CTGATACCAATAAAACCCTAAGCATTTGGTTCAGGG ++ +II#IIIIIII$5+.(9IIIIIII$%*$G$A31I&&B +@seq22 +AATCAAACTTACCAAGGGGTTACGACGCGACGCCGT ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq23 +TGTGCTTCCCCAACTTGATTTAATAACCCTATAGAC ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq24 +TTTCTCAATCCCCAATGCCTTGGCTTCCCTAAGCAG ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq25 +TTGCTACTGACCGCTCTTCGTGCTCGTTGCTGCGTT ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq26 +CCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCT ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq27 +CGCTAATCAAGTTGTTTCTGTTTGGTGCTGATATTG ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq28 +AAAGAGATTATTTGTCGGTCCAGCCACTAAAGTGAG ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq29 +CAAATTAATGCGCGCTTCGATAATGATTGGGGTATC ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +@seq30 +ATCCCCTATGCTTGGCTTACCATAAGCAGATGGATA ++ +IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bwa_wrapper_in2.fastqsanger Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,120 @@ +@seq1/1 +GGACTCAGATAGTAATCC ++ +II#IIIIIII$5+.(9II +@seq2/1 +ATTCGACCTATCCTTGCG ++ +IIIIIIIIIIIIIIIIII +@seq3/1 +GTAACAAAGTTTGGATTG ++ +IIIIIIIIIIIIIIIIII +@seq4/1 +AGCCGCTCGTCTTTTATG ++ +IIIIIIIIIIIIIIIIII +@seq5/1 +CAGTTATATGGCTTTTGG ++ +IIIIIIIIIIIIIIIIII +@seq6/1 +AGGCGCTCGTCTTGGTAT ++ +IIIIIIIIIIIIIIIIII +@seq7/1 +TGTAGGTGGTCAACCAAT ++ +IIIIIIIIIIIIIIIIII +@seq8/1 +ACACCCGTCCTTTACGTC ++ +IIIIIIIIIIIIIIIIII +@seq9/1 +GCCGCTATTCAGGTTGTT ++ +IIIIIIIIIIIIIIIIII +@seq10/1 +ATTCTTTCTTTTCGTATC ++ +IIIIIIIIIIIIIIIIII +@seq11/1 +GCATTTCTACTCCTTCTC ++ +II#IIIIIII$5+.(9II +@seq12/1 +CGCGCTTCGATAAAAATG ++ +IIIIIIIIIIIIIIIIII +@seq13/1 +ATTTCTACTCTTTCTCAT ++ +IIIIIIIIIIIIIIIIII +@seq14/1 +CCCTTTTGAATGTCACGC ++ +IIIIIIIIIIIIIIIIII +@seq15/1 +CCAACTTACCAAGGTGGG ++ +IIIIIIIIIIIIIIIIII +@seq16/1 +TCAGGGTATTAAAAGAGA ++ +IIIIIIIIIIIIIIIIII +@seq17/1 +GTGATGTGCTTGCTACCG ++ +IIIIIIIIIIIIIIIIII +@seq18/1 +TCAATCCCCCATGCTTGG ++ +IIIIIIIIIIIIIIIIII +@seq19/1 +TTCCTGCGCTTAATGCTT ++ +IIIIIIIIIIIIIIIIII +@seq20/1 +CTTATTACCATTTCAACT ++ +IIIIIIIIIIIIIIIIII +@seq21/1 +CTGATACCAATAAAACCC ++ +II#IIIIIII$5+.(9II +@seq22/1 +AATCAAACTTACCAAGGG ++ +IIIIIIIIIIIIIIIIII +@seq23/1 +TGTGCTTCCCCAACTTGA ++ +IIIIIIIIIIIIIIIIII +@seq24/1 +TTTCTCAATCCCCAATGC ++ +IIIIIIIIIIIIIIIIII +@seq25/1 +TTGCTACTGACCGCTCTT ++ +IIIIIIIIIIIIIIIIII +@seq26/1 +CCGCGTGAAATTTCTATG ++ +IIIIIIIIIIIIIIIIII +@seq27/1 +CGCTAATCAAGTTGTTTC ++ +IIIIIIIIIIIIIIIIII +@seq28/1 +AAAGAGATTATTTGTCGG ++ +IIIIIIIIIIIIIIIIII +@seq29/1 +CAAATTAATGCGCGCTTC ++ +IIIIIIIIIIIIIIIIII +@seq30/1 +ATCCCCTATGCTTGGCTT ++ +IIIIIIIIIIIIIIIIII
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bwa_wrapper_in3.fastqsanger Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,120 @@ +@seq1/2 +ACGCTCCTTTAAAATATC ++ +IIIII$%*$G$A31I&&B +@seq2/2 +CAGCTCGAGAAGCTCTTA ++ +IIIIIIIIIIIIIIIIII +@seq3/2 +CTACTGACCGCTCTCGTG ++ +IIIIIIIIIIIIIIIIII +@seq4/2 +TAGGTGGTCAACCATTTT ++ +IIIIIIIIIIIIIIIIII +@seq5/2 +TTTCTATGTGGCTTAATA ++ +IIIIIIIIIIIIIIIIII +@seq6/2 +GTAGGTGGTCAACAATTT ++ +IIIIIIIIIIIIIIIIII +@seq7/2 +TTTAATTGCAGGGGCTTC ++ +IIIIIIIIIIIIIIIIII +@seq8/2 +ATGCGCTCTATTCTCTGG ++ +IIIIIIIIIIIIIIIIII +@seq9/2 +TTCTGTTGGTGCTGATAT ++ +IIIIIIIIIIIIIIIIII +@seq10/2 +AGGGCGTTGAGTTCGATA ++ +IIIIIIIIIIIIIIIIII +@seq11/2 +ATCCCCAATGCTTGGCTT ++ +IIIII$%*$G$A31I&&B +@seq12/2 +GGATTGGCGTTTCCAACC ++ +IIIIIIIIIIIIIIIIII +@seq13/2 +CCCCAATCCTTGCCTTCC ++ +IIIAAIIIIIIIIIIIII +@seq14/2 +TGATATTTTGACTTTGAG ++ +IIIIIIIIIIIIIIIIII +@seq15/2 +TTACGAAACGCGACGCCG ++ +IIIIIIIIIIIIIIIIII +@seq16/2 +TTATTTTTCTCCAGCCAC ++ +IIIIIIIIIIIIIIIIII +@seq17/2 +AAACAATACTTTAGGCAT ++ +IIIIIIIIIIIIIIIIII +@seq18/2 +CCGTTCCATAAGCAGATG ++ +IIIIIIIIIIIIIIIIII +@seq19/2 +GAGCGTCCTGGTGCTGAT ++ +IIIIIIIIIIIIIIIIII +@seq20/2 +ACTCCGGTTATCGCTGGC ++ +IIIIIIIIIIIIIIIIII +@seq21/2 +TAAGCATTTGGTTCAGGG ++ +IIIII$%*$G$A31I&&B +@seq22/2 +GTTACGACGCGACGCCGT ++ +IIIIIIIIIIIIIIIIII +@seq23/2 +TTTAATAACCCTATAGAC ++ +IIIIIIIIIIIIIIIIII +@seq24/2 +CTTGGCTTCCCTAAGCAG ++ +IIIIIIIIIIIIIIIIII +@seq25/2 +CGTGCTCGTTGCTGCGTT ++ +IIIIIIIIIIIIIIIIII +@seq26/2 +AAGGATGTTTTCCGTTCT ++ +IIIIIIIIIIIIIIIIII +@seq27/2 +TGTTTGGTGCTGATATTG ++ +IIIIIIIIIIIIIIIIII +@seq28/2 +TCCAGCCACTAAAGTGAG ++ +IIIIIIIIIIIIIIIIII +@seq29/2 +GATAATGATTGGGGTATC ++ +IIIIIIIIIIIIIIIIII +@seq30/2 +ACCATAAGCAGATGGATA ++ +IIIIIIIIIIIIIIIIII
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bwa_wrapper_in4.fastqcssanger Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,800 @@ +@427_12_390_F3 +AAGGGAGTGGTGCTGGTGGGAGGCAATTTGTCGGACCTGGGAAGCGAGTC ++ +BBB>=;@@A6<A;=>=A?>??@A58@B>9>>@?70?@<=>>@A9/5?=25 +@427_12_550_F3 +CGATCTCTGCAACTTCGTGCGCAGGCGATGGGGGGGAAAATGAACGGATA ++ +8A=?<BA@=;?A;?><B?;:5@.<:7?9;6<A62<@;8<==@3:>;=339 +@427_12_941_F3 +GGGCCAAAGTAAACGCTAATCGAGGAGGACAAAGTAAGGAAGGCGCCTGT ++ +B@72=>?A:;<:?>?94B??;3A<?1@<3=<A?8>A6?>=>7A/>=07<@ +@427_12_1018_F3 +CTCTTCTCCTCCGGACTAGAGGCCCGGGCAATCAAGGCTGCGTAGACGTA ++ +>?<;5@:>>5>7:?<7@><=:>?92<?5>=;@@>?2<?>:?<9<4>56?@ +@427_13_422_F3 +AATAACGAAGCGTGTGTGTTAGCGGGAGAGCCGGGCCCCTTCCCGTACGT ++ +9>A2,9@9<8<=;;7=7:>@1<:?37<1>1690>7=<:=A/>53.::<=/ +@427_13_494_F3 +CGACTACCCCTACCGGTCACCGCTACGGTGAGGCTAAGCTCTTCCAGACG ++ +.>>?@;A@?7?@<>39?>=7:==76;=;=65@:::9?8?3=@8=::@2<. +@427_13_606_F3 +TTTAACGCGATAATCCTTCGAAGGAAAAGAAGTGACTTTCCGTACATACC ++ +BB?A?@A??>B@A@<=@A==A>>>>AA@7<?:B=9<@A@A@2@>8><;<= +@427_13_861_F3 +CGAGGTGCAGGCCTGCTCTGGGGACCCACTGTGACCAGGCGGCCTGCCAC ++ +=>>@<@>BB>>58A=@A<BABA:=>@B:==?A9<AA@7::@;??:A?;2> +@427_13_961_F3 +GACGGGAGACGCTGCGATCGCACCTTAATGGGGGACCGGATGCACAAAAG ++ +@BBBBB@BB@B>BBAB@B@AB@ABAABBA?B?B@>@@BA=A?A:<>BBB3 +@427_14_270_F3 +GCAGATGCGTGGAGCAACGGTGGTCTGTAGATCGTCAGGATCTGAAACCA ++ +A=A@?BB>@9@BAA89>A@:A@@>2@A;383B><;:;>=1=8B:<>=?8= +@427_14_376_F3 +TCACACGCAGGGCCCCGTACGGAGAATACTGCTCAATGAAAATGGAGGGG ++ +B9??@BA@;?BB@@>AA?:?>A><=<A:4=5<?;=<?;?:95=61;<:<2 +@427_14_602_F3 +GGCCGGTTGGTCGACTAGGCAGGCCGACAATGCCTGAACATACTAGGGCC ++ +,B=7==A:9;AA45,=:9/.2<;58>9806:=>:<8=877?=9198>:2: +@427_14_665_F3 +CATACGAGGGAGTCTCTAGCATAAAGCTGGGTCCCCTGACATTGACCTGA ++ +<A@@>B7<A5@>@>>>;<@68,9@;<-<<:>9?@?>6.A65=;=8569;5 +@427_14_1010_F3 +GCTGCTGTGGCCGGGCGCACCCAGACAGGTAGAAAGCCGACTCACCACGT ++ +@??A><@=ABA@?A?A@A??AB@AA@=<?B;<@?A<94?A=5;:@@2?@9 +@427_15_423_F3 +GCTGGAGGAGAAAGGGGGGACCCGCAATCGAGCGTCCGATAATGAAATGG ++ +>/B@=<A=??@B>A>B@@>9?@=A6@B@9?5@6A7A@>@A?=?A/@@A?= +@427_15_646_F3 +CAGTTCGCTTGGTCAATCAATATAGAGAACCTGGGGAGTAGTGTCCGGAG ++ +?@=?>=A?@??B876:@65.B<914;;<06=?914:67997;5<:/7771 +@427_15_872_F3 +CGGGTAGACTTTAGTACCTAGACGAAGGGAGTGACATGACGTCGCGTACA ++ +<:??A@B@B==>@>A:6=?;5<::30<==63@;;1?=;A5,=7<,4;6@0 +@427_15_1039_F3 +AGAGTCAACTGAAGCTTCCGAGTCGTGAACGGGGGGAGGAGAGGGAAGGC ++ +BBB@@@B?A?ABB><A>?9=:=<:@:?>51:AA>?87>?979<>><>>=< +@427_15_1070_F3 +CTACTCCCTGCATTAGATACTGGAGCTCGGCTAGAGGGATGGCGTTAAAG ++ +=>A<@><?BAA?A?>?4??=;>?@>??=:@<6?98==><<:;<8A:7=@5 +@427_15_1081_F3 +GCTCCTCCACGATTAATCGTTGGGGTGCAATGAGAAAACAGCCAATGGCC ++ +@=AAAB@?@>?B@?=BB@?@B=@>;B@3:?BA39?>@7==<<<A?A<1A? +@427_16_264_F3 +CCCGATCCTAGGCAGAATCGAGAGAGACCACAACCCGCGAAAACCATTGC ++ +@<>?@@?AA?@??@>>?;:A>>A=?>=?>?:A>@@@:A8@@@:>/@>A4= +@427_16_565_F3 +AGCTATGGAATACCAAGACATCCAAGGAACTACTGCCGAAGGTTCCGGAG ++ +BB1AABB9@@B>3>=@@,?AB<8A>@@9<=BA8<<>>4A??@:??<?6@< +@427_16_1107_F3 +TGTGTAAGTGAGACACGAGAAGCAAGAACTGATGCCCTGCAGGGTTTAGG ++ +<+>B><:;A@B?:>>:A7B5;B@?B>8;:>8=B:B@=;@25A9A=>@1A: +@427_17_46_F3 +CCAATGAATGAAACAGGGTACCCGCGAGCGCCTGCTGAGCTGACAGTCTC ++ +:.>A:@>@?7A@<=2?;6?;>;99=<:8;95>0:><14;@4:><:,;:8? +@427_17_342_F3 +AGCTGGAGCTGCTGCCACGGACAAGGTCGGAGCTGAGGCTGGCTGGACTA ++ +BA?A?BB>>ABB@;;AA@@>AA>=ABB1??:B6>?>B72>@B49>?@3<< +@427_17_446_F3 +TATGCCGTGAGACGGGGGGAAACAGACCCTACCCCGATGTATAAGGCCGG ++ +=B?>8>BA?=>B;?;>A;:<=?937;?=2;6:==;9=@3?9;51;9:149 +@427_17_917_F3 +AAGACTACGCGTTAGGCCAAGAGAAAGACTCAAGAGACGACCTCTAAGAT ++ +@@=???A6=-;A:3<@?866@94:20<11@3;19:=:/:9<<45B@:48B +@427_17_1027_F3 +CAGTGCAATGGGAGTAAAGCAAATTCGGCAGCCCGTGGCCGAACCGCTTG ++ +A@@BAB=>B>BAA?5>=AA8:@B@;=@?@9:>BB::?@A54=B?<0<B@: +@427_18_267_F3 +CTGGCACCGAACGGAGGAAGAAATTGCGTAGATTACAGTAATCAGAAGAC ++ +AB@A;>@A@>AAAB:8B<>>@B@A=@?=@;=A<A3>?;@@?<:>+A?;A. +@427_18_481_F3 +GGCTCGCCCCAGTATCGACGTCGTATGAGAGATGACGAGGCCCGGGCGAG ++ +AB>?;B@A>=AAA@@@A?=6B=><=B=<8>=7A2=<==5;@5>7<=3=>; +@427_18_706_F3 +CTCTATATGGAAGGTTACTACTCAGTAACCTTAGGGACCAAGAACCGGTT ++ +>AAA@B?BAABAAAAA@@@A?B?>=B?@>>B@6??@><@@?:?A;<?=?? +@427_18_834_F3 +GGGACCCGACCTAGGACGGACAAAGACAGGGACGACAGATATACGATTCA ++ +@@@@><?A><@A?@7@A@@6=><?;<;;7@>=?=:<:<;>=6=/:A?B?4 +@427_18_846_F3 +GGACGCGTCACCAGAAAAACTAGGGGACGGTCCACGACCATGACGGGGAG ++ +BABB>BBBB7BBA@@ABBB1<BABA<B<A89BB?21A@@22@@A?>A@=? +@427_19_11_F3 +CAGCCCACATGCACCCACTGGGAAGGCCACCCATGAGAAACTCCACGATC ++ +=1:<4>?><;=?><1?:>?7>=>=:<=<99:><<55;>>,@=>93>/15: +@427_19_137_F3 +AAGCTGACGCTACCACGGACAACAGCGGTCAAGGCCGTCAGGCGAAGCGG ++ +?78;?@?<>;=AA=;7?9<8;=<:<8><968;<9;:<:;::<53;=7+85 +@427_19_296_F3 +CCAGAAACCTCAGCAACACACCACCTAGGCCCCCAGGGTCGGAAGATGCA ++ +B@BABBB@BBBBAA@<AAAB>@A@?AA@?@>A=?9>?>?@@@?@=?A<@@ +@427_19_324_F3 +TGGACGATTTAATGGCAGGGAAGTGAGACAAGACTGGGGTCTGCGAAAAA ++ +A;=?3A>>:>>:<87:8483>>627=;40596=885:66>3810/843:9 +@427_19_533_F3 +GAAAGCTCGATCGTTCGACTTTTCTTCGTCTGAGTCAATCAGACTTGGCA ++ +BA@@?>@A?>A@@@@?@<=BAB?>BA?<>3B?<;@?AB?7><@@@AA6?- +@427_19_899_F3 +CATACCGTAGCCCAGGCAAGGAGACGCTCAGTGTAACAAGACGCAGTCGA ++ +@??B>=@<A?;@5AA8=6@B<:3A>6=57@9A2?A=;:A?4>,9A7=48@ +@427_19_1049_F3 +TCCGCTTGGAACATACTAAAGGAGAGTATATAGATGACCAGGAAAAGCTT ++ +?<>@:A?@B>B=>@@?>AA?B>@@@BB35@B>98<>A5/AB><<BB>8<: +@427_20_363_F3 +GACGTCGAGATACGGTACCCGGGCTATATTTTAGACGACTTAAAACTAGA ++ +AAAA>@B>A+BB@A7B@?<==?>=@.@9?=>A=<<1><>>>=@@?74?.@ +@427_20_407_F3 +ATAACGGACACCTAAGAAGAGGGAGTTAACATCCAGCGTAGGGCGCGTAC ++ +BBBB?BBB?ABBBBABB@>BBB?@?AB?@@2B?@;@94B@AB??;/?@>= +@427_20_608_F3 +ACAGCACGCGGCTGCAGGAGGGAGAGAGGGGCAAGACGGACGGGCCTGTG ++ +B@9<AB?35>@>9?=AB7:@@A6<@A=>=A@@=<=?@<;:=<-<@:=0=: +@427_20_892_F3 +GACACTCCATGGGTTCGCCGTACGTCAATGCCGACTGAAGAAGCCAGAGG ++ +A@A@?A@@>@BA?AA@>@>?B@AABB?AB:@A>?AB<BB@A@>@>>9>?= +@427_20_982_F3 +TCCCGCGCAAACATCCTGATCAAAACCATCTCCCTGACGGTGGGCTTGAT ++ +@??>>>?98@@<36:;=:9=?:89<>9;.:7??/734:40;09.8<1834 +@427_21_328_F3 +TGTGCGTCTAACCCCCCCCAGGGCGACGAGCTGGGAAGGCGTGAACAAGC ++ +B@>>@BB;A?BB?A>AA>;8BB>:<@@<7<AB==>?><>9@A:=7A@/<= +@427_21_334_F3 +AACAGTAAACAGTAAGGGGGAGAAGGGGCTCTGGACGATGAAGAGGGGGG ++ +AB>4>?B@84>@>@;@BA<=<A<3@?A;1=6?=8>@=?7;A=<<?<;<69 +@427_21_366_F3 +CTACCCCCAGCTTTCCCCGTTGCCTGCGGCCCAGCGGTGGGGCCCATGAG ++ +>AA?@@@@>?>B=B><B@?A@AA;B?A=7:<B<>A9>B=@<BA?B>@;?7 +@427_21_473_F3 +GATGCATGGACGAACCACGCTGGGCAGGACGAATTCTACCGGGCTCGAGA ++ +BA?<>>B:>8=B@@8=<==;@A>@;<@;=<69/=<7>5<>4?9;91;36> +@427_21_537_F3 +AAGCAGTCATAGGGAGCTAGGCGTAGAGAGCGGCTGTGCAAGTCCAGACG ++ +AB@@@ABA:A?B@B>>AB=A@@;A?@A@?>8?A<A>=><@@4>=@@7:=9 +@427_21_563_F3 +CGACAATTCTCGATCGTAGCCAGTATAAGAGACACAAATGCGAGGACTTC ++ +>@AAAAA@?=>BAA>=A@@??>=A==@@?@<A:@>:A@@=9>@<@+>=@A +@427_22_56_F3 +GAGGCACCGTCACAAACTAACTACGTCGCTGGTTGCTCGCGATGAAGGGG ++ +?>=>.?A@?9AB>;?7@A<<=B:;<@7=:?6:B:;3?>0@38A3??<8<< +@427_22_692_F3 +CGCGATACGAAAGGGGAATCGCCGAACCCGTAAACTAGATTAAGGGAAGA ++ +:?;<>B>:@>A>>AAA71@=<?3>2=>?7;9<<7;?7<>9?=+=?-?=7; +@427_22_787_F3 +CGGTGGCAAGTACGCCGGTAGAGAGGGGGGGGGGGCCGGGGGGCTCATCT ++ +<@5>:@@<76@A;;;;A7=;<><;8>A;4;>A<965+;<;<>598;6<82 +@427_22_927_F3 +TCAAACAGAGTAACTTGATTGGTTCCTAAGTGGTACAAGAGGTCGAGGAA ++ +@ABB@>?A??BAB@AB=A?B@@BB@A=@A@B<?9=?>=7<?>><9<>>?; +@427_23_177_F3 +CTGAACGGTGAACCAAGGCTGCGGCACATGCCAGGCCATTTTTGGTTATC ++ +>A@AA@@@A>BA>@=?A@>AA<>>=@@:?=>A<=>>>2BAAA4:,A?6A8 +@427_23_740_F3 +GCAATCATCAGGTTCGGACTGCCACGCAAACTCTGAGAGGATTTTCTAGA ++ +B@@AB@<?@AA@A?@?A@?>A;@>@B;?AA=2>?@A/A=A@A@@B<??7> +@427_23_874_F3 +GGAGAACTCTAAGAAAGAACTTTAAACCAGTCTTGCCCCCCGATCGTGAA ++ +<@ABBBAB=AABAAA@@BA<>A@@B?A??=A@B@@@B<BBB<=<@:>?>: +@427_23_986_F3 +CGGTCTGTTTTGCGGGACACGAGGTCGTGAACTAGACTGCGGGTGCATCG ++ +@6=??@<<><>@A@:<=<;==>@;3=>8=;>::?8@?9=99=4:6@<67; +@427_23_993_F3 +AGACTCCGGGACAATGAGTCCAGCAGAGGGTGATGAAGGAACGAACGGAA ++ +@>BAAA?BBB@?B@BA@ABAB?B?A@A?AAB@<AA?>@=AA<ABB@:@AA +@427_24_476_F3 +CAGCAGGTCCAAACGTGGATCCGCGGGCGGAGAAGGCGACACAGGGCAAA ++ +=B>:>>A<<76===6=?;3=;<<45<=6,876968:-256;693464<<< +@427_24_880_F3 +CGTAGGTAGGCCAGGCGAGGTATTCTATCTGGGCGCAATTACCAGGAACA ++ +AAA+AB@?;@AA?;?ABA>AB>B:=BAA+@=A>4?>A?=@4?;2>9A=1? +@427_24_952_F3 +GGTTTTTCCTTGTTCATGTGTAATCCAGTATGGAGGGCCAAAGAGAGTCC ++ 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+>?@B?BA@A=BAB>@BAAB?B@AA=BB?@?B@A@9A:A<7B<B@>B<@@A +@427_30_1018_F3 +CAGAAAGGCCCCTAAGGCACACACCCGCATGAGGCCAGGCTACCCCAAGC ++ +@@@AABB@B?A@;4AAA<;A?A>4AAA98BAA:9A@B=3B;A;:A>A=,B +@427_30_1044_F3 +CCCTTCGGAGGCGGACCAAGACAGCTAGGGAGGGAGAAAAAAGAAGAAAC ++ +?BA@ABB=;AA><==AB>=@>A@=>=A?=A=A>9A7BABB@A3@A.<76+ +@427_30_1053_F3 +CGCCGTGCGCTTCTATCGTGGGACGCAAGTTCCGGATGATGACAATACGT ++ +<?A=@@ABB>BB@?@;;8A@>@??@>=A<A=9?@?9=9@<.:<BB:9<== +@427_31_153_F3 +GACAAGGAACTGCCAGGCCGGAGCGGAAGACGTACCATCATCAGCGCGGG ++ +?>=>9AA?@;@A?;9@@:;;>>6<;?@9<<<A@8<><=8@A=>1?9>:9= +@427_31_598_F3 +GGCAGGGTCTGGCTAGCATCGGTTAAGGATCTGGGGGAAGAGAATCTACG ++ +BBA?AB@?/-ABA=9A:1?9BA@@<8@>0<>?=<>@@=?::AA>@::99= +@427_71_906_F3 +TACCGGGGGTACAATGCTCGGCCGACGGAACTAGTTCATACTGAGCAAGG ++ +>??AA=?A?@A>?77@==<:<A><;===?>1?9::@9A:9-A5>750?:8 +@427_292_217_F3 +CCCCAGAGTTAAGGGACCCTGAGGGGACGTCCAGCCACCAAGAGCGCGAA ++ +@@@=@BA?AA@A@??6=A<B>@?@>>A<=A=?;?>=?@@A;=><>5@>>= +@427_794_484_F3 +GCTCATACGGACGAGACACCCGTTCCACGATTGAGGCCACCGGGGGGAAT ++ +A@BAABBBA=ABBA=@@B?4<BAA4>A@81@B@26>A@+<>=?<;?BB:2 +@427_1253_1057_F3 +AAACTCTAAGGGGCGTCATACGCCGTCGTCGGTCTAAAAAGCTCCCCGGC ++ +BB??@A@>?:AB>A>B@>@<A@=><B@;>8=A@9?>@:=:?=8<8?<85< +@427_1299_965_F3 +GCGGACGAGACACCCGTTCCACGATTGAGGCCACCGGGGGGGGTCTGAAG ++ +@;>?@BA@@>@B?79>??=?AA88?@A5<?;?9=?=?89?@?97>A?:8> +@427_1444_687_F3 +TACCTCTTACCCAACACAAAAACCGAGACTTGTTGCAACTGCGGGATCGT ++ +?;@?B@ABA:?:B@;A;@A@A?@>@A8?<A?=@;<>A?>?<@@><@A?4A +@427_1522_8_F3 +TCGTGCAATCCGCGAACCACACCGCCCTAAAGCCCAGAGTTAAGGGACCC ++ +8@@A@?<>B?A@A?;,@@=<6@>A@@A:A>9@>=<<@;AB<@=A@@<=B@ +@427_1891_897_F3 +CGTAGAGGCGAAGTGGTGGACGTGGAATTCACTAACGCAACGTACTGAAC ++ +?@?@>AB??9BB>?A@B?07>B>;>>BA89AAA-;=>?=@?=@>@@@>=A +@427_1927_689_F3 +TGCAATCCGCGAACCACACCGCCCTAAAGCCCAGAGTTAAGGGACCCTGA ++ +@A897BB7:8?A7:/71,85<:793:<5:0386;1:><<;::7<6;4:83 +@428_247_467_F3 +CTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCGAACCACACCG ++ +ABAABAAAB@AAAA?>>?AA:?@A:9=>A@4;?B@<>8B>.8?A>1:<@> +@428_385_1306_F3 +AAAGGACCTAATAACCAATAGCAAGGACCTGGTAGGCAGTTTATGTAAGA ++ +@B;@??A8AA3B@A@0><A>6<A?8,9><A::;>><9?;A>?9@8:<>5< +@428_435_1382_F3 +TTAAGGTGCAGGTGGTGAAGCGGAGATGTTACCCCGCGCGAGACCCATCA ++ +<?<BA<B@=@AAB@=AB@AAAA>>=?A;?5B?A==@B=@8@>@3A@??2/ +@428_589_1697_F3 +CGAGTCTAGAAGAACGAAACGCGCCCCAGGCCGAAGTCTAAGGGGGGCCA ++ +@1>B6<<;A?@?B></=B@@/>>B???5?:=<=?9:=12><:>>;:<577 +@428_615_1095_F3 +CGATAAATGGCACATTTGAGACGTCGACCTACGTCTCAAAATGAGGCATT ++ +<9<A>BBA@9@B@AAAA9@9=A=B19?:<=;A:A.6>7>?:A/?;:<4@@ +@428_628_321_F3 +GGCGAGCACTGATTGCGTGATAGAGGGTAAACAATGCGGGCCATCAAACA ++ +>=9<;?>>:?@>>A9<?>93A:7;5=9>:4?:.8;9:79.948>1?<775 +@428_666_413_F3 +GGTGACAAAGGAGGTGAACAAAATTCACAAATGACGGTACTCAATAGCGG ++ +ABBB=BBA@?B?AAAA@@A<:>@A?=?=@::?@?<=6@A8:<@@=?=<>7 +@428_912_273_F3 +TCCACCGCGAAACGGGCCCCGTCCAGAAAGAGAGCCCCGACTCCCCAGGG ++ +BAABBBB@@BABA@BB@>??BB@A?@A=@<>@??<ABBA::@A@@@@9>< +@428_1011_1047_F3 +TCGCGCCGCCCTAAAGCCCAGAGTTAAGGGACCCTGAGGGGACGTCCAGC ++ +BB?>?BA@<>?B>=?A?>8@AB@A?A@>;=>>??@>A?==@?=6@>7;5> +@428_1380_646_F3 +GGTTATCCCACGGGTACTACGATTTTGGCAGCGAAACACCAGAGGAATTC ++ +>?@?=B?:==AB==>>??>6??@?>?@8=8=A;?7?@;>4>?0=7>??A8 +@428_1424_131_F3 +CTCTATTAGCCCATTGTCAAGGCGACAGACACACAACAATCCGACACCAT ++ +6B7?@BB>:>AB:@BBA>>8B8;:7><<>=9<6<+>8><<?@9>05<46= +@428_1495_1538_F3 +CAGTGCAATCACTTAAGGTGCAGGTGGTGAAGCGGAGATGTTACCCCGCG ++ +A@BAABBAB=B?BBA@?ABA<=B@A>>@<A>=B@>:;B@@=6B;9?:B<8 +@428_1562_623_F3 +CATGTATTTGACGGATGGTCCAAGGACGATAACCAATAATCCAGGAAAAA ++ +;@A@BABA?AA@A<B?@?==@BA=:?@?><?>?5:==A?4:>?32:=@?< +@428_1569_464_F3 +GCATCACACGACGTGCAATCCGCGAACCACACCGCCCTAAAGCCCAGAGT ++ +=8@@:@A?9:>??A;=><?<<>A=8+?>>28=?=98><@96=@>9=<>:= +@428_1573_204_F3 +ACAAGTCATGTGACGCAATCACTTAAGGTGCAGGTGGTGAAGCGGAGATG ++ +B=;=ABA9:AB@;=AA44>5?;==65=2;978?:;19?/@-1=<==3?:= +@428_1632_1017_F3 +AAACGTAACTCTAAGGGGCGTCATACGCCGTCGTCGGTCTAAAAAGCTCC ++ +BBBB9BBBA@:=8<?@?@@1B7@A/===?6A===,>;B9A86?65=.=?: +@428_1643_455_F3 +TAGTCTAGGATTTCCCACACCACCGGCCAACCGGGGGTACAATGCTCGGC ++ +A>>A>AA?;BBBAA>B@@?=AA@@<9>>@@??>A?<=<B@=75<A>;:<@ +@428_1684_1168_F3 +CGGGAATCTCAATGCAAACACCCATCGGGTTCACTGGGCCCCACGCATGG ++ +@BAABBBAABBBBABBBAA>>@A6BABA>BAA@=B@AA@@=A?;<A?==@ +@428_1691_159_F3 +TCCCGTTAGCCCATTGTCAAGGCGACAGACACACAACAATCCGACACCAT ++ +@2<?ABA@A=A=@@@@>?@>><<?=?><A92;=<8=8=AA<=9?1;;+@> +@428_1816_859_F3 +TGCCCTAAAGCCCAGAGTTAAGGGACCCTGAGGGGACGTCCAGCCACCAA ++ +BB>?=A?<;?A?9=@=>=<:=A=?=A@;@:>A==<:;=A;;;;<:=;=@3 +@428_1829_1041_F3 +AATAGTGTCACATCGCGAAGGAGCCCGGATACAGAAAAACGTCGAATAAG ++ +,??A@9AB>@5AA>A9A?=?:B=?:5A=;>8@;:89A>=92A96<4@>;9 +@428_1841_222_F3 +GCGCCCCATACTAGAGGCGAAGTGGTGGACGTGGAATTCACTAACGCAAC ++ +@;;>@@B<=A?B=<@??7<?@A>?9A<,>7>A199?B9==:B679;;6=: +@428_1971_118_F3 +CATCAGAGCGAGCTCCGGTAAACCCACAAAGTCATCATCACCAAAGTACA ++ +=>A?AB9><=AA9?>==:?4?@9=;8=;>1=?;8?:9=799;==<>;<3< +@428_1978_162_F3 +TAATGCTCGGCCGACGGAACTAGCCCATACTGAGCAAGGGAGTTAAATTC ++ +@?>AAA=:AAAA?=>@==?=>A@;>>@@?===?<:9>?>?+?A@9;>?B< +@429_320_1424_F3 +ATTGAGCGGGCGAACTGCGAGCACTGATTGCGTGATAGAGGGTAAACAAT ++ +BB?9=>B<=><BA<??@=;=:=A5=?@A>==AA48?72:<>>=??@:33= +@429_498_1544_F3 +CGCGAGACCCATCACACGACGTGCAATCCGCGAACCACACCGCCCTAAAG ++ +B@BB@BBBB@BB@AAB@=AABBBBBBBB@@ABA:ABB:>BBBA@A8A?@6 +@429_517_617_F3 +GGCCAGCTCCGAGAACTAACCGAAAACGTCAAACACCAACCAAAAAAGGA ++ +AB?@BBBB@ABB@@A@BA??BB@@@??7@=BB?>?><@=@A???@B:<:@ +@429_525_1146_F3 +TCCACCGACCTGCAGGGGAGTCCCAGGGAATTGAGACCCGAAATCCCGCC ++ +BB@B?<BB@=BB@A@<A@??A@@>@5@:15AA:1:;>68855;-:2;474 +@429_566_873_F3 +TCAAACTACCGGGCGTAACAAATGGGAGATAGTGCGTTAGTCACGAGCGT ++ +B9BBABBBAABBAAABBB?AB@AAB@BABB=??@A9B@AA@<A?A=B=>@ +@429_627_1289_F3 +TTAGCGCCTACTGAAACTGCAGTGTCACATCGCGAAGGAGCCCGGATACA ++ +BBBBBBA?BBBB<BBB@@A@B@?=A@>>@AA??>?>B>:=A>===??<<B +@429_641_991_F3 +TCGCCTGTAGACCTGCTTTGCAACGAGCGCGACTGCCCCGTCTAGGACGT ++ +B@@?ABBB@@AA=AB:BBBBAA=@B=B=@:=B=@<>B>?@7A@>A=@;<6 +@429_706_923_F3 +TAAAGCCCAGAGTTAAGGGACCAGGAGGGGACGTCCAGCCACCAAGAGCG ++ +/4<B?6=<B?=@BBA8@?A@<A??@8@>?>=A>@>8>=>=8?:A:6@>A9 +@429_820_1223_F3 +AATGGCAGTAAACACTTAAAACAAGTGGAGGAAACAGTGATCTATCACTA ++ +=?@B?BBA@>;@B<4B<A@@<BB=45A:2B;AA;0;B;=<@=@;:<576< +@429_880_338_F3 +GATGTGAACCCGGAATTCCAACGTCACTGCGGGGATTCGTTTAACCCAGG ++ +A@A?BBAA@@?B>A@@A=?B?A8?;=A=>@@A?>?@A8;AAA=A<?<;>= +@429_899_643_F3 +CACAAAATTCACAAATGACGGTACTCAATAGCGGAATATGACTGGACGAT ++ +?AB@6>?AB<=@AA@>@<A>=B@=>3@?@><A@@=>>?A=>;B8=@@6<< +@429_1074_1497_F3 +ATGCAATCCGCGAACCACACCGCCCTAAAGCCCAGAGTTAAGGGACCCTG ++ +BBB;BBB?5B=BB+BA@@/BBBABB<@A5ABB@0A=BB5B<BA2@B?@2> +@429_1244_262_F3 +TTCTACTGAAACTGCAGTGTCACATCGCGAAGGAGCCCGGATACAGAAAA ++ +BA>BBBBABBBA@B>>B?:B@@<>B;A7?B@B>;A?AB@@>><A9?6AA@ +@429_1264_776_F3 +CATCTCAATCAGAGCGAGCTCCGGTAAACCCACAAAGTCATCATCACAAA ++ +8AB@BBA@A@AB>?A@B@?@A@@>A@@@>=?>>>>A:@@:A=9@<6=2;? +@429_1285_1614_F3 +TGTAGTTGCTACCACAGCCTAACAACACACAGACAGCGGAACTGTTACCC ++ +A@BB?ABBBBBBBABBBB?AABBA@<BB?A@B>6@=@@;BA@@>@;?B?? +@429_1292_826_F3 +CGGTGAGGCTCCCGTCAAAGGAATATCACTGCGGGCCGACCGATCACAGT ++ +>A@A?AA>?BBB>@@;:?3>A?@??7@@;A=?<<<>=;@??<?9?7<A2A +@429_1304_326_F3 +CCACGACGTGCAATCCGCGAACCACACCGCCCTAAAGCCCAGAGTTAAGG ++ +=<B@??@ABA@ABBB<@@AA;@@A;8??A>?A@@=>@A@?>?@AB;@A@? +@429_1398_1503_F3 +AGACTTTCGACGAATAAGCTGCAAAAAGACATAGGCCCGAGGAAGCGCTA ++ +BB?@BBA>A?<AA>B?:=9B@;AA@@>>?=<4>;@;8A=@<3@@=66>>? +@429_1427_1475_F3 +GGGGAGCAGAGGGACGTCCAACACCGCTGGCATCGAATTAAAGGGAGTTC ++ +ABAA<BBA@ABB=A>@B@?@@A7@<@B3<>??9>=:?>?@<A297/<=@? +@429_1568_890_F3 +TTAGAAGAACGAAACGCATCCCAGGCCGAAGTTCAAGGGGGGCCACCGGA ++ +@??@@@A?@@?:.=A:;,?>A45?<;9+?=@?7?:A<,?<?=6?<=;-?> +@429_1819_792_F3 +GGCGAAACACCAGAGGAATTCACTACATGGTGGGAACCAAAGGAGTCTCG ++ +?@B<?AB>=>@B??A=?=@B@@>>>.=@;@@=>=?:=@?>0<>1=,-75= +@429_1854_1258_F3 +TCAGTAAACACTTAAAACAAGTGGAGGAAACAGTGATCTATCACTAGCGA ++ +BBABBBB?A@BBABBA??@AAA@:7A?@?=>?@>;9A<>=@:7=5=>>>9 +@429_1876_126_F3 +AGCGAGCCTTGATCTCAATCAGAGCGAGCTCCGGTAAACCCACAAAGTCA ++ +A@AB?B@@>AB?@=@<>4A<A<<=<<>:;>?>?;@A>>B=@6=@<A7:=1 +@429_1899_322_F3 +AGGCCCGAGGAAGCGCTACACTGTGACGTCAAAGTCATCTACGATGGTTT ++ +>BA?@ABA<<=>@;=6@==5<@><;6=>=9=?;8;2??6A9=:0>=@<5> +@429_1905_281_F3 +CCTAACGTGCAGCACACTACCCAGAGCGCGCCCCATTGTAGAGGCGAAGT ++ +<7B?5@BB@>BB?@6:;?@6>>?@87?@>1?@>@6@=9A<><<=2@?><< +@429_1921_1124_F3 +GCAAGGCGACAGACACACAACAATCCGACACCATCGTTGGCGCAGTATAG ++ +@A?@?@A@@?AB@@=9A?=>;B@A?3A?8;;@=>>6B@:;5><?>>9?:= +@429_1925_1090_F3 +TGTCGCCACAACCTGCAGGGAGACGAGGGACGAGAGCCCTGAAGACCTAG ++ +@BB<ABBAAB@B>BB<BAAA?B?AA:B@AA<A=B=7@A??<ABA>@AA>? +@430_78_1025_F3 +AACCCACAAACGTAACTCTAAGGGGCGTCATACGCCGTCGTCGGTCTAAA ++ +ABAA@<AB@B?@BAB??@;A@?A>@?=B7@@<@6=>8@<<><=;<5@@@A +@430_89_1672_F3 +GGCGGAGATGTTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCG ++ +B?B?9@B@>=A@B=>A>?A@B<@==?=?@;>7A?>53A;>32@BAB>6?; +@430_131_637_F3 +ACCAGAGTTAAGGGACCCTGATTGGACGTCCAGCCACCAAGAGCGCGAAA ++ +8??<>>@@8B68>?9=A8?=BB<AAA>0@;@<<A<>A9B@>A8=:@=A?; +@430_179_99_F3 +GACACCGCCCTAAAGCCCAGAGTTAAGGGACCCTGAGGGGACGTCCAGCC ++ +AB:B@@A>A@AA?B>==7B?@?<B><?9@;@@5A9@A;@>?>;B?<<9@: +@430_392_28_F3 +CACACGACGTGCAATCCGCGAACCACACCGCCCTAAAGCCCAGAGTTAAG ++ +=BAA??=?@B@@@BBA:=B@>=@?A99>A:;=@3A?6>B@<@@;@A=@A@ +@430_491_367_F3 +AGAACTAAACCTGACACTAGCCAGCCGGGCGTCACTGCAAGGAAACTGCC ++ +@A?B?ABBA?6BA?@=??A@?@?;A;??<A<B/@A:@,@5=<>@9>3,=? +@430_607_895_F3 +CAGTCATGCAACGCAATCACTTAAGGTGCAGGTGGTGAAGCGGAGATGTT ++ +7@?B=>BAAA>A?>>@B<:9@B;>>=B;6;?>A9:>?<>9>?=>3?B??9 +@430_688_525_F3 +GCATTCACTAGCGAGCCTTGATCTCAATCAGAGCGAGCTCCGGTAAACCC ++ +=AABABB?A@BBA@A>>@@@@A<?@:<@5>;?=>==:;??:;6?@=<=1= +@430_691_1191_F3 +CTGCAACGCAATCACTTAAGGTGCAGGTGGTGAAGCGGAGATGTTACCCC ++ +?ABB@BBB@@BA??@A>@;A==?7A?@@:>@=?8@;@;<9?A>9=@<>?9 +@430_693_248_F3 +GACCACACCGCCCTAAAGCCCAGAGTTAAGGGACCCTGAGGGGACGTCCA ++ +2>BAA??A@A@B>AA<98@>=B<@@2B?=@>@<A?:A??>@?@B?>A>9: +@430_821_1672_F3 +ATCGGCTGGCGCCAAGAATGTATTTGACGGATGGTCCATCGACGGCAACC ++ +A@?AAAAAA@=?:BA>B@>ABA?@A?B>:=@?<<:@>B=74@B;=><@65 +@430_874_1668_F3 +GAGAATTAAGGAAGGGAGCTAGCGTACTAAGCATACGGACGAGACACCCG ++ +A@AA>A@AB=@BAA@A@>@?B@=@?B@:A@?>:>A>=69@=@8A@@:/9? +@430_900_444_F3 +CCCGTCCAGAAAGAGAGCCCCGACTCCCCAGGGCTACCAGCATAGAACCA ++ +=9??BBB@ABABA>A@A=@AA@<<A>A;=@AA?;A>@@:?A<B>@@A?9> +@430_1055_244_F3 +CGATGTTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCGAACCA ++ +?BBBBBBBBBBBBBABB@BB@=<AB<>>B>9?<AB;:>BB@@<B?>3A@@ +@430_1080_625_F3 +AGAACTAGGCCTGACACTAGCCAGCCGGGCGTCACTGCAAGGAAACTGCC ++ +B=BBBBBBBB>BBBB@?BA@B?@AB>A@AA>A7A@B?+@7A>A?<B-=>@ +@430_1105_227_F3 +GAGTAGTACAAAGGACCAAGTGCAGGATCTGCCTTGTCAGCGCGAGCAAC ++ +BBBBB=BBABBBAAB??AB@=BA@A;>A;B>A??B5ABBA2@A:@??AB@ +@430_1195_1598_F3 +CCTTTTTCAACAAGAGTATTTAATGCTCTGCTGTTTAAGGCCCCTCTCCC ++ +@B@BBBBBBABBB@BBBBBBB@AA><6.=>@=5<BA4A5>@8A7B>48:7 +@430_1270_1392_F3 +CCTGACACTAGCCAGCCGGGCGTCACTGCAAGGAAACTGCCCTCGGAGTG ++ +BBAB:BBABB@BBBBBA>BBB?B-ABB>,@=B?8A>B=;@@B;->;@71A +@430_1280_786_F3 +TGGTTTTCCATGCTCCGCTGGCTCAACCGAAGCCATAACGCGAGCTGGAA ++ +A>@BBBAA@BABAAA??@A@A?=82=A<;:@A=<6?@:90>A@:0A?>;< +@430_1307_10_F3 +GCATCACACGACGTGCAATCCGCGAACCACACCGCCCTAAAGCCCAGAGT ++ +?ABB@BBBA@>ABB@8>ABA;@?B?7B<A09B?A>?A:B87;BB?<?AA9 +@430_1403_722_F3 +AATCCGCGAACCACACCGCCCTAAAGCCCAGAGTTAAGGGACCCTGAGGG ++ +BAABBB@@BABA?A?@=>@@ABAAA?A>>ABB<@@BB??A@>@?BA@@=? +@430_1406_34_F3 +GAGCCCCGACCTCCCAGGGCTACCAGCATAGAACCAGTTCGGCCGGGACC ++ +BAABBBAB?>A??@><<A@:B@@?<>A4B:AA>A8@>A@=A9??5@@;>7 +@430_1531_1322_F3 +GCATTAACCTTCTCCCCTCTCCCCGGAATTTGTCGTCTCGTAATTTATGA ++ +=A-:=>B:<@?<>=AA:@:@@@=>@?><@BA@A;>@<>>??=<BB=;=6= +@430_1586_641_F3 +TCCATAACGCGAGAGGGAAAGAGTATACGATCTAAGAATTAAGAGAGGGA ++ +@9A?BBABABBBBABA@AAABBA>BBA?;AB@@@B@B;??>B=<><:B2> +@430_1684_261_F3 +CTCAAAGGAACGTCACTGCGGGCCGACCGATCACAGTCCGGATCAAGGGA ++ +5@?>?:@>?@4?><@6=?::9@8>91?99;9@:53.A;496:?8=/<=-; +@430_1726_1548_F3 +TTTTCGACGACGAAGCTGCAAAAAGACATAGGCCCGAGGAAGCGCTACAC ++ +;BBB=9@BAA3AA@>4=A>?<A@@=8<?;@8@@>>2=>8A69>5>4<==< +@430_1779_172_F3 +GGCAGAACACTGCTAGGGCGTCAACGTTGTTCAGAGCCAAAAACACAACC ++ +ABBBBBBBB@BBA@@ABA?@B>A??9BA=BBB@<@?B@AB@@@2@:B@9B +@430_1871_988_F3 +TAGATGCTCTTGCTTAGACTCACCCTTTTCCCTACCCTAAAGGATATGAC ++ +A>A@ABAA<@?B?@B=A@<A?B=@+;A=>9:@A>47>??::>:=>;7>>6 +@430_1994_1381_F3 +GACTCGGTCTCAGATCCAGGAGACTAACCAACCTTGAGGGAAATTAAGAG ++ +@BBBABBAB==ABB@>A@A?A@B?A>B@=?@AAAA=AA@8;ABBBAA?@8 +@431_44_655_F3 +GCTATTAGCCCATTGTCAAGGCGACAGACACACAACAATCCGACACCATC ++ +>-<=>@@4:=>@?A:>=9=::::=:5<:<66=7865<9;<59=13:+<;; +@431_50_371_F3 +CGGCCCCGTCCAGAAAGAGAGCCCCGACTCCCCAGGGCTACCAGCATAGA ++ +=AA@@AAAABBBAB@=@9@A@A@A?>B<??AA>@;?@?@>B?6=B7@8A@ +@431_274_859_F3 +AGCCCATTGTCAAGGCGACAGACACACAACAATCCGACACCATCGTTGGC ++ +=AAB>BB@@??BB@<?;?@<BAA=<<A?=;BA@BB=A29@<A;>-B@8=9 +@431_362_522_F3 +CAGCCATAACGCGAGAAAGAAAGAGTATACGATTCAAGAATTAAGAGAGG ++ +?B@?>ABBAA>B?A?@A@A@BA=A<8@>A?2@A@>AA?A?@<@A::779> +@431_427_471_F3 +GAGAGCCCTGAAGACCTAGCACAGTAGAGTGACTTAAATTAGGGGAACGA ++ +BB@BABBAB@BB@B@>BA@@=AA?A>BA<B?A?A@.=7?@+>=::0<;:> +@431_436_304_F3 +TTCGGCCGGGATTTCTTACCCAACACAAAAACCAGGACTTGTTGCAATCG ++ +9@@AA?A@A?8BBB;<B>>84B?><1A>A=7@6><3?>A65A:;:@<6>5 +@431_510_914_F3 +AAAGAGGGCAGATCGGGAATTTCACGCCCAACGTGGCGGGTTTGGAGAGA ++ +AB@A@AB@>A@?BA??=>AAAB=??=?=9>;@:>?1=<@:=@4=58<5@< +@431_524_1355_F3 +GAAACTACCGGGCGTAACAAATGGGAGATAGTGCGTTAGTCACGAGCGTC ++ +BBBBBBBBBBBBAABBB@BB@ABBA@;BA?>?AB@A@BAB?@?A@@:><? +@431_753_1184_F3 +CGGGAGCCCGGCCAGCTCCGAGAGTTAACCGAAAACGTCAAACACCAACC ++ +4=BBB@ABAB>BB@B@BB?BABA@B>BA?A>>?>B>7A>B@?=@<8?;?@ +@431_933_606_F3 +GCTTGATCTCAATCAGAGCGAGCTCCGGTAAACCCACAAAGTCATCATCA ++ +<<BBB@A?B@ABA@B;AB@A<>>AA8@=A@?AB@@==??A=@<8@=9>9@ +@431_1029_654_F3 +CGTAGGAGAGTCAACTCGGTCTCAGATCCAGGAGACTAACCAACCTTGAG ++ +@AABBBBBABBB@B@A@B?CB+7BB@@@A<BA=?@ABBB@A??=A=B<=?
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bwa_wrapper_in5.fastqcssanger Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,840 @@ +@853_7_53 +NNAGNCCGANNGGNGNNGTANGGNTNNATTGCGNCNCNNNNGGGCNNNCG ++ +!!14!3.15!!47!4!!8+1!$9!(!!,..1)&!3!(!!!!1/9&!!!,3 +@853_7_78 +NNCTNGGGGNNGGNGNNGGGNGGNGNNGGGGCGNGNGNNNNGGGGNNNGG ++ +!!##!###$!!##!&!!#$&!$&!&!!%&)'#'!$!#!!!!&)*(!!!&* +@853_7_88 +NNGTNGGGCNNCTNGNNATTNTANCNNACAGGANCNGNNNNGGGGNNNGG ++ +!!61!5551!!13!4!!.,)!/,!3!!.)/17+!&!5!!!!-'0.!!!,5 +@853_7_132 +NNGGNGATGNNTGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG ++ +!!$(!,#&#!!&#!#!!#($!%$!#!!#&%#$(!#!#!!!!)(*+!!!,2 +@853_7_141 +NNGGNGCCGNNCANGNNGGCNAGNCNNGGACCGNANGNNNNAGGGNNNGG ++ +!!54!9518!!1&!5!!/31!)0!6!!)533/:!5!6!!!!)/<:!!!,7 +@853_7_146 +NNCGNCACCNNGCNGNNGCTNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG ++ +!!10!/240!!0)!2!!#&'!'5!(!!(.-*$3!*!4!!!!+#(.!!!.( +@853_7_269 +NNCGNGGGGNNGGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG ++ +!!%&!('#%!!#*!#!!/##!&)!$!!'$',%,!%!2!!!!3,,*!!!,2 +@853_7_321 +NNGANGTGGNNGCNTNNGGGNCGNCNNCGAACGNTNANNNNGAAANNNGG ++ +!!+$!+21(!!*-!.!!)#1!8/!9!!6,3+%6!'!,!!!!2&6,!!!&2 +@853_7_386 +NNCGNGTAGNNGANGNNGTCNCGNANNGAAGTGNTNGNNNNAAAGNNNGG ++ +!!31!:7-%!!:,!-!!21,!77!)!!227:9:!2!;!!!!)',%!!!86 +@853_7_405 +NNGCNAGGCNNTCNGNNAAANGTNGNNAGAAGGNANGNNNNATCTNNNCG ++ +!!<8!8;==!!;>!:!!7:7!7;!8!!7:>48=!2!=!!!!536*!!!;: +@853_7_411 +NNCANGAAANNTTNGNNAGGNAGNANNGAAGGGNGNANNNNAAAANNNAA ++ +!!,/!13;,!!&,!+!!2/%!*1!$!!%*)+#,!,!&!!!!'-'&!!!++ +@853_7_445 +NNTANTGCANNACNCNNCGANCCNTNNTACGGGNCNGNNNNTGGGNNNGG ++ +!!&'!*+'#!!'%!&!!,%#!)%!(!!'##$&'!#!$!!!!$$#,!!!#$ +@853_7_469 +NNGGNACAGNNGANTNNGAANGCNANNAAGGAGNGNGNNNNAGATNNNAG ++ +!!##!*($&!!##!#!!%))!#1!%!!(,##$.!#!(!!!!##'#!!!&$ +@853_33_1583 +TATGTATTTCGGTACCGCACAGANCACTCCAACCCGATAGCGTCAAGTCC ++ +/&2%,)+,+:&#:;,5*)8/%19!,%*1/%;#<952%:27#%%&4.,#-1 +@853_33_1649 +GCTTCGTTCTAACTCCTACATGANGACAGAGCTGCATGCAGATTAGGTGA ++ +<9:<9<<=8866<888;87:<8:!24:8691=;)&$)#)$%%1$$#).1% +@853_34_1182 +GTTAAGGGTGTTAGGGAACCCTANAAAGCCCGGGTTTCGTGGGGGCGGGC ++ +;7;5*982;:/;,46::69<4<(!4295.6144&::<4*.-+%$#.#,(# +@853_34_1358 +GGCCTGGCCCGAGGGTCAACAGTNTTGATCTGAGGGCAATATTCGAGGCG ++ +<<??;=<?>>=<>>=<?>:=@;9!:><>:9<<=;<<=>,=8<:6;9<8/9 +@853_35_596 +GTGTTGTGTAGGCAACAACGCAANTATGGTTCAAACCGTTCTGATGTAAA ++ +:555079793528;282707:89!*;4;85:):<966.4;547203:978 +@853_35_669 +TTGTGCTGTCACGGCAAGGCGGGNGAGTTGGTGCGGCTACTCTCATCTGG ++ +#4(,,&5,'-2(&5'10&)&-&3!,)+.*9&););:,8)7&3<&,/1:)& +@853_47_795 +GAAATGTTAACAAACCACTGAAGACTTTATAGCGTATTTTTTCATTACTG ++ +?<8;>>=>78<:6:<<&=>><)=;78)?9>/189A0/>>>A36,=<&7<1 +@853_47_831 +TGGATACACGTAACAGAGGACCGGGCAGACTACTCGGGGGCCGTCGGTGG ++ +.)/'0(,&#*#'#)#(#(#*(#'%%1.3#$-2%$&/#$(#'%'%(##%+, +@853_56_1228 +GCTCAATGCAAACAATCGTTCCCACTGATTCCAACAACACCAACGCTATG ++ +=::<:?=?:>@=<><>=>87=<><)>97>=<=3=7=</9;==:67+9<6: +@853_56_1324 +GGGCTTTAACGCGTCGGCACGAGGTAAGTGGAGTGGCGATGGCACGATTC ++ +5,(,)5+)57+94*,*3-#*4,2&2$2'(,2)-)22/)$23/1*)24'%$ +@853_82_2023 +GTCAGAAGATCTACTCGAAGGGGTTTGTTTACAGCATAAATAAGGTTGGG ++ +=7><8<=8<><;9<>=<77>>:>><=;>:?97<:3;;=</64:53:<969 +@853_83_197 +GGCAGATGATATGGACTGAGTGGGGGGGGAGGGGGGGGGGGGGGGGGGGG ++ +8;95;6:96698;6;89:3=%(-*$&(+$&#%.''+(.-%-/5.*.*4/5 +@853_112_119 +CCTAGGATAATACGCGGACAGGGGAGCTCCGGGGGGAGGGGACGGGGCGG ++ +7)&8327,(41&&),%1/)%+242(1,)')&15,)&05#$50,$$87&.$ +@853_112_253 +GAACGCTTATGGGGTCCGCTAGCTAACGCCGCCTGGCCAATAACTATAGT ++ +;9;97857&:;6;&983;4=83/,::2=,8;7(&<;/8+275(/9-1&(; +@853_148_1347 +CTGGCAAATTAACCCCATTTTTCCGCTGCTATTAGAACCTCCAGATGGTA ++ +@>A<==;;<<?;A<?:7;=>;;76=6<84?3>6,<=3359>71;595</9 +@853_148_1509 +GCTGGGTGAAAAGGCCCCGGCTTCACAGAATGTAATTTCTAATAGTCTTT ++ +-'-:+&1.,)&&=(=)?7=<=4&,>:(;,&<))))8)+(,'&(4&,(,3) +@853_157_314 +CTCGCCTGGAATTTAGCCATGGCTATGTTCTAGGTGCTTTGTTAGTTGCG ++ +79();(1<))&2(5+&8&+.9-'198,',))&&7&:*,4)(6&2&/:&77 +@853_157_582 +CAACAACATCAGGTACCCCATAATCCTCCTGGCTTAGGCAATATCAAAAT ++ +=:??::<>;;>:;;A;<;;>=?=<<<:>6==:?:<@<64:<89339==&2 +@853_158_402 +GGTTGTTAAACCGTCCCGGGCGTTATCCACGTGTGATACCCGCGCATGTG ++ +711&$(-)##.,&((&(4('83><-:94,'.;2&*:<0%&7,3#+02#(# +@853_158_569 +TTCGTAATTATATTTGTCGGGCATTATGAGTACGGAGGTTATTATATAGG ++ +8>34:8.56,9/7<=-80.562,994:)3,<#%85(,#7&%,'#3#,#%& +@853_216_501 +CCCTGGCCGGTCGGGTGCGTCACGCGCCTGGCGGAGCTCCTAGCCACGCC ++ +/>61=+11:/5/+/(&/1'%#:3&;&93(';0$4&*9,&/+))2')65.& +@853_216_648 +CGGCTGGAAATCCTGTAACTAAGGGGGACCAAACTCAATGGGCTGCCTCG ++ +/6;/7;488)8:/;48788;57>85/99=35;677(7:90,2'41(%'&+ +@853_218_1907 +ATCAAGATGCGCCGATACGTAAACCTAGCCACAACACTATAAGCTTTGAG ++ +;53381<428:98:5::97/;;4:;;8996=4895<78589/8,6839(- +@853_219_184 +GCATTTGCGACCATTTTGGGGTTGGTGGGGTGGGTGGCCGGTGGGTTGGG ++ +/&3&,)/,$)/&)2&#%(:/+#,*&$+$$(&1)/&+1##'&'#-,)&'%- +@853_233_615 +TTATGGATTAAATTTTAGCTAATTTGGCCCCTATGGATAAGGAATCCCTA ++ +(7.1:154753447,222383647814041,3+,4.-/%+21((2)2'7) +@853_233_834 +GGGAGTTCTAGTGGAGAGATTATTCGCCGCCAGCTGCGTTGAGAGATGAA ++ +=<<=;><:6:;<<3>=:=8>><<8;<=63;>99099&%,##&'2##%/$% +@853_244_474 +GATTGAGAAGGCTGCAAACGGCGAACGACCGGGCGGCCTAAAACCACGGA ++ +)15$&/&*,&,,(&&0.,&,07:)/1/4&))96&)'/&''.(+&1'&)'' +@853_244_781 +AAGAATTTATGACACCGTATAGTGGTCCAGATTTTGACATTCGTGGCTGC ++ +8<>9:;>>68=7=;><<>7?:;>;=@989>9;>=?<298=<,,:75)42& +@853_255_146 +CCTATGTCCCCTGACGGCACGCCGGGTCACCGAGCCGGGCCGCGCCCGCC ++ +5.)8&)'++7:',%'&&,(1)1/8'('%1)20#%,4-$.&$''(1(0(/7 +@853_255_403 +ACAACCGAGCGATGATACAATCGGTAATCACGCACTTATGTGCTGAGGAT ++ +<8:<?>=;9;>;78)>;99=<<;87=>?58;>=90<?38-:9+9&7>031 +@853_256_428 +TAATTCAAGCAGATAAAAGAGTGTGCGCCCACCCTCCAAGGAAATAGAAA ++ +2=<66<=>6::3<,8;>:3<3825,:1:98897,057::24<986:+,:: +@853_256_834 +AATGTCGCCAAAGATTCCATGGCAAACTTACCGTAGGTTTGCCAGAGGGC ++ +'%&#)##########&##$&$####&#$##############$$###### +@853_266_697 +GGAACACATTGACAGCTCCCAGAGATACTTTCGATCAGACCATCTGCGAC ++ +9;:==>??9;:=;;;:;;:<>8<<9:=8=<;>99;5<6:;8=;580::;9 +@853_266_1092 +GAGCCGGAACGAGACAACCCGTTCTTAACATCCACCACGCGTGGGCGACG ++ +;)2))/8%'10:712<67<3(39</68/5)6&')/170&49)6)//,)&& +@853_279_1056 +TGTGCTCTTCCGTCATAAGAGAACCTTAAGCTATCACGGACACAGCGCCG ++ +:;76;:=;:<7::;<<<3<76;:<9=<5;87=3<=5@3<7388771:;5< +@853_279_1330 +ATAAAAAACGGAAGGCAACTCATGCTCACCGAAGCAAGGGAAGGAAAAAG ++ ++<.)4)9'-<->&$<1#$#1$$(%32)+'5,#1#9362#451%%711,%7 +@853_292_158 +AATGTGCGTTTAAATATTCGGTCTTGGATGCTGATCAGCTAAAACGTATG ++ +;=;;9;>>89=><94<;>9:;:896;;<8;3<<177=:5<6=:73<:9'9 +@853_292_700 +GGTAATGAGGAGAGTACGGGGTATAAGCTTGGGGGGCTGGTGTGGTGGGG ++ +=9;<9=;>;:8<;>&+47=5176<28:6<./:66/*'4:)%++/#,/&.5 +@853_365_890 +TGTGGGGGGGGAAGGGCGTCCGGCTAACGTCTCGGCGGGTGCGGGGGGGG ++ +<:7:=<;;;<9==><<;9<>:;>>;:;7<;<68(-#6+1&5,(4'2'.*2 +@853_365_1447 +ATGGTTGTCAGACCGTATGAGTATGCCCCACGGCTGCCTAATCCAATGGT ++ +6<7(:;:9)7=79+5;8;399;06<9703:772$8#&$&##(#$#$###$ +@853_368_1718 +GAGATGCGCCGATACGTAAACCTAGCCACAACACTATAAGCTTTGAGGGT ++ +:A98;;/:>:>5<;@=;>=?><<<>>:<6>=7>:<85?>;3;<:;/7;78 +@853_369_74 +AGCCACGGATCAGAGGGGGAACGATGGTATAGGAAGGGATAAGTCGGGGA ++ +7:9875:8:7<69;78.$2/9&)6%0-$5)96&879'$8,&(/))6*2&( +@853_375_367 +CCGATTGTCTTTCTGAGCGCACCGAATCAAGGTATCTACTAGCATAGCAT ++ +'+);,18&&&''),2&))4,%/1&5.1+-'/,'-1()))&'*)'+)&/&) +@853_375_856 +GTTTACTTGAGTACATCCTCAAGACTGTCTTATGCCGAGGCTGCCTTTGA ++ +8<;;>??83=>;63:@:?9=@<=>8@:?5?>8=1?;98;9<>4&40&2(% +@853_381_1334 +GTTACAGCGAGAACGGCAAATGATGCCACTGTGCTGCTCGGGCATTGATT ++ +8>=9>9<98=:9@;@><>?<@=7??><8)=@>;:==9=8=<==7<)6/4: +@853_381_1648 +TTGCAGACTAGTTTCCAGGTATATTTTTCAAAGCCTTATTTTCTTTTTTT ++ +986+0<95:8;(>5<<)58?,4)8;<5&,9/),()35)-3&7(&832$&/ +@853_383_962 +GCTCATAGCGTAGCATATAGTGGGGGTTAGGATAAAATCGTCGTAATGAG ++ +>;;58@<75::477$5;8;%:;>:177@4*59=5&6;@4-7;73//;9:, +@853_383_1666 +AGCGTCTTACAGACCCAACTTGAAGCTTGCAGGAAGGGGCAAACCAAACA ++ +,,('6:.6-&7,(=15&%&<&&1(/16',.(1&&8($$&&+&)76,5815 +@853_389_1983 +TACCGTCTTTCGATTGACCGGTCGGTCGGGGGCCGGGTGTCCGGTTCCGG ++ +,&9):88.&'&&/.&4&%4(6#$4531,)66,.2-51#'2/&'5845,8. +@853_390_660 +CTAAGGCAACGTATTGGTCGCCTTATGGTAATGGTACGTATAATTAGGCT ++ +>8A==;<<<>;;A98<;:<=>;9;=;;;;>;8<;;@5;:81=:894;:), +@853_392_1916 +GCGCCGGGGTACAGTGCAAGCGCGAACGAGACGAATTTGGGGAGGGCACT ++ +:<=<<<>>;>9<28A;<:*;:=95889<.:8;>34;6)%+6;05&::1+1 +@853_393_183 +TCAGGATGGCCGTAATAATGGTGGCGTACACGCGCAAATTCCTTATGCGG ++ +=>;<<=*;4-;+9':>$427:&972<)71=;*793<1<1:;:7/9=)7/; +@853_397_1746 +CTCTTGGTCCAATGCACCCACTATGCGGATCTTGTCGGCTCTGGTTGTTG ++ +5,;2+22,58<:25-=94<)44,2,884:,7,)22441018.#,(1#,1* +@853_398_593 +AATTTAACGTATGCGGTTTTCTCTTCTCAATCCTCACACCGGTAAGAACA ++ +(=714-?,:<,91)717878<7/9396=51,<<=,)/;8=5,:/8;7813 +@853_423_1430 +GGGCATGACACCATCATGTGCGACACGATCCTGCAAACCAATTATTGTGT ++ +68<:>;:;<:<<<;<;;>=:8;>:=8=<:<7::<;59<:11:,)+0&<3/ +@853_424_115 +CCCGATACAGACCATGCGAATCGAGACGGGCTGTCTCCAGTCCAACCCGG ++ +6>8:8<;>7?;;<,7>>;;8:<=16;:789549$%&6)'040$('%0''2 +@853_439_1980 +CAATCAGTTTATGCAAGCTAAATCCCCGAGACTGAGAACGAAACTCTCGG ++ +,<='0/71(/:.;2<<9:5>7?2<8<=9987;51?*=>:(7;<,()&:6/ +@853_440_379 +ACACAAATAGCGGCGTCCCAAAGTGCTCCTGAGGCGTGAGACGCGACGGA ++ +9=8<5:8<:3<>97:;8<98=998:<:;:7;9:5+;07</663:7:8=<6 +@853_443_704 +CAAGCGAGGTGAAAACAATAGAAACCAGTTCAGCCCAACCCCGCGTCGTA ++ +=;5:>>9;9?A:5<8<74<<=:4;;?<8<==:;:8<:9=:-)/(/)6;7+ +@853_443_1353 +AGCCGAAACGATTGTCGTGTAAAGGCGTCCGCCGGGTCAGATCGAAACCG ++ +921/5>7972<889;:;9:3?>5;/95<509=7.878/4/;:.28;9/3( +@853_458_262 +TTACCTGCCTCTCCCTCGCCACTTGGATCGCCGGCTGACTCTACATTACA ++ +<;:=7:;;<8<=8;=<</<9?<9::<<:;9;;84:91#2&%,-($&&%*% +@853_458_615 +TTGCTGTTACTGAAGTCATACCCTAAAGCTTAGTATGCGCGTGTGTCAAG ++ +97899::;:<<:;;;<::9;;77:;;/8:=<6;86;34;;8695;:+5:< +@853_489_665 +GAAGAACGAGGTTTAAGATAGCGAAACCGCGACACGGACGGTAGAGTGGC ++ +?::=-->4%&22=8)3<1;7$//6#)=(:%%<2(*,4,;7'92832:$9) +@853_489_1193 +CTGTTTACTGTATTTGCAGAGTGGAAAACGCCATTATGGATTATACCCGG ++ +=<=>=>>><?=2?=<>,>=>=5>===:<:>=)?;<92>55=)><;60@58 +@853_557_600 +TTGCCCCAAGATCGATCTTGTCCCGAAAACGTAAAGGGCCCGGTGCGAGA ++ +&+&))(51(,1&&:'7:&)=.8),/5034&.&31&0.&-/$3'&)&1&1, +@853_557_1176 +CCCCCACTATATGCTTCCTGGGAAGGCTGGGGGTTACCGTCACCGTCCAC ++ +>;@>97>:9:><>8=@<;6?=>@5A=:?<<>9;9?@9<7==3:59=<<,; +@853_558_962 +TACTGACAAGATATTGTTACACTCCACTATGAGTCCGGACGTGACACCTG ++ +@=@<===<<<<9:<><<=;?@9=<>>8;:?<)4;<<5:;>;/<:<=;2:9 +@853_558_1569 +GCTACACACCCCCGAGCGGCCGGTGTAGTCGACGTGCGGAACGGTCGTAA ++ +(?16:=57:=779:995@=9?<?:>3<??=?339@?@;<@3?:8>><53? +@853_563_1263 +TATGGGCATGACACCATCATGTGCGACACGATCCTGCAAACCAATTATTG ++ +;?:;?>>?:>>>>9?>=::?<?>>=<<<===:=9<?=<78;=58891,8; +@853_563_1776 +ACCTTGGACCCCTCCGGCAGCATCGGACAAGACCGCTGGGTGGTCTAGGG ++ +=A><?@A:AAA@<>AA9@==?96AA=69;<>8A3>;86&?:;6&<>7??< +@853_584_1986 +ATAGCTTAACCGAATGCTTTAATAAATTTGCTGTTCTGAGGGCGTTACAC ++ +,:)155*-9#7,;,)'232.:1(4,7#$3#97$%$,''+$,2(##,#%#( +@853_585_542 +TAAAGAGACGGTATCAACCCCAACAAATTAGCCAATCACAAAACCTGCCA ++ +:<><>99==8:::?<;=<?A===<<:==37;><<7=;8,><>9:1=6:15 +@853_585_1153 +GCTCACGCCAGTACCCCAAAGGTCAAGCCTTTCAGATTCCGGCCTGGTTC ++ +87?><89<==9>868=95:49<>7;:96<,:=;-1::::64;58/9;;)1 +@853_611_981 +GACCTGAGCAGCAGTCGCCTGGAGCAAGCCGGCCGATATAAATCGATGCT ++ +85275/655287&4<7<5889<176837797:835.6&44427/'48$71 +@853_611_1451 +TAATAGCAGCATTCAACTTTCCTGACCTTTACTACTACCGAACCTATGGG ++ +28#'%)5/,)46%-#28,4,/;00,'6,/'-;4%(#9,###:++'.9*## +@853_626_841 +ACGGTAGCCATGACAAACAGTTGGGGTATGCCTTGCGTAGGGCCAAGGAA ++ +A?@??A>@<<?@>?@@AA5=?AA@>8>83@>>>7A;:7,=<@<;69@A63 +@853_626_1431 +TGGGTCAATGCCCTATATGACATTAGGTTCGCGGTCGGTAACGAACAGCA ++ +11-/8<:967:;959<<:5:<21781187057585;;*6-5$%8,2&%9$ +@853_628_1041 +TGAGCAAGACCCGTAATCTACAACGACCAGCGGTTATGACAATGTATAGC ++ +978:5,7295,/889'529//,,:55227($128:'9*83,4&29&,%57 +@853_628_1976 +TTCCGAGCTGTCACTCAGCGCGATTACCCAGATTCACACTGCTGGGTCCG ++ +<@<:=9;<=?=968A8:<:<9<.>?8:::7<1=;0:95348/9$&&,-&- +@853_630_585 +TAGTGTCTTGGTTCGTGTAGAAGTGCCTGGCTTAGCTAAATCGAATTGCT ++ +15/,/(/))=&,)>,):(>:<=/,)/3>:,,49/(6)/;/',.11.+9'4 +@853_630_1363 +ATAACAAAAGATTGAGGCCCATATTAGGTATTACCGCAAAAGGTGAGACG ++ +A@A=AAAA>A?@><?>@AAA8=:A@:?>A89:@>?=<?=@8A;;=59@8A +@853_648_1618 +GAAAAGGGGCAGAATTTCGAGGGGAGTTAGGGCACAATCCCGCTAGCAGC ++ +&?,//&6(=77)):,)7.)933<)4%=:-8,831885//@3@:154',&3 +@853_649_292 +ACCCAACCCCCCTTTTTCTCAACCCCCCAACCCCCCTCTCCAGGAATTCC ++ +:9>;;:>=;;?>;;<:75<=89::<:=9;5::?;:=28;<804;2754:: +@853_669_616 +TCTCTGATGACAGTATTCATGTCGCTTGATAGTGGAGTTGCATGCTGGAT ++ +:=<=>;6<;>?1:9<@;7:=;693;A056A5/;5<5:>8;74;5=@111? +@853_669_1548 +TTAGCTAGACATTAAACCATCCCTCTCATCTCCGGTTAACCCCGCCAGTT ++ +=;=<<=<<;=61:977/7;:96::<8.7<8;39:;976;;63)9;1+2:1 +@853_678_1204 +GCAACCCGTACAAGTACAAGTACAAGTACAAGAACAAGAACAAGTAAAAA ++ +)=1=89;35:6:=:6;9A<5361?>1/6/=<'/;,A=&,:&>=/(5&A7& +@853_678_1908 +TAATAGGTCGATAACGTTAGAGACGTAAGAGGAAAGTAACTGCCGTCATG ++ +8@?:57<:::?;=><=:<?:@=?>9=@=97?;>=7<7?:66<:;:9;=83 +@853_718_1061 +TGGGGACGATAGTGTAGTCCAAATGAACACGGCTGGTGTCAGTCTGACCG ++ +=A>?@???<@>>@?=>>@?>==8>=>??<7:?<=?<76=<87<5739;=: +@853_719_183 +ATTTTAGTTTACCTTCTTGAGTTCTACCTTAAACTTTGACCTCCCACCCC ++ +)/31.$%5'/#)',4#)'+$&7%%,&)#&&#%($$$$$%###%$'.##)' +@853_775_1932 +GAATGATTAACCACCTTAGTGAGGCGTATCGAGAAAACTGCTAGAGTCGG ++ +<<,3=;6</,:<=::8:>;>99;@<>:;?<;><>@;:6::9=7:,6;1=@ +@853_776_924 +GGATTGTTACGTGCGCCCTATACTGGAACTGACCAGTCATTGACTGGAGA ++ +-212<+87/3582?/4731,<2(A:956/<3148*:7/28069392;:7/ +@853_815_1179 +ATTCAATGGACTAAATCCGGGACCGAGGCGCGTCTGGCAGTCGACAGCTA ++ +67827:>5597:=:<6<,224348025,71:879724,2(7/29)92222 +@853_816_193 +GTGGTCTGAGTCAACCTGTAGATGTTTCGTGCACGATAACCCAGGGATTC ++ +><><<;<@;9;>;=::>:==8<::=8>7<<:</=<8=@<?878>?<6?<6 +@853_827_2017 +TGGAGCTGGTACGAGTACGCACGTATGAACTTAATGTGCCATACGTAAAT ++ +:>8?<<:97;666;<7:88;=9<<7;9'4,:79<6:9:4228):090/+2 +@853_828_1138 +TTAAAAGTCATGAGCGTACAACACGTGCCATCTGTCCTTAATACCTATCA ++ +&)&$&)&&&&)&&%&&&&)&'&&&%&%&&%%&#&&&&&&&&&&%$&&&#& +@853_843_799 +CGAGTGCAGCGATAATACGACTCATTATCGGATTCTGCGTCACACTTAGA ++ +:A@AA@:A;;AA>4?@@>/<AA=3>A9?)@@==77=<<0=?<:,7>8356 +@853_843_1357 +AGACCTGGCTACAGGGTAAATATCACAGGCAAACACCAGTCACTGCACAC ++ +<?:;===>:A=:>?>>A:<?@:9====>/=:;:5,<9>5797833<89/6 +@853_844_231 +TTAATTCTAGGTTTAAATGGAATTAAGATCCTGAGCCGGCCAAACCCGGG ++ +&&8151/>,/,/8,(?<=&('(?/;8&8))<?11=39%718,$,./9*89 +@853_844_634 +TCTATCCACCGAAGTCAGTGTCTGAAGTCTTAGACACGTTCGAAACCAAT ++ +7#56860817:11777)66,9&>7%;188/87,9&5608#9.764682%0 +@853_877_1974 +TTGCCGTGAGGCGATTGTACCAAGATAAAAACAAAATAACCTAAAAACAA ++ +*,*-4'#)74,',)(*##,#&#+#%##&#$'##%##)(#$%##$#(##'# +@853_878_1093 +GGTTGGAGCGGGATAGCAAATGAGGATCCTGTCACAATCTCCCACTCCGA ++ +@@/&3,(,,5533/161?@57/1,3>3<<8>53)65=1)735,1A<;:8@ +@853_887_1933 +CGCACACTAGTTGTGGAGTTGAGAATAAAGCAACGGGGGGTATCCCAACC ++ +<;5?;853'::89/<:>=59<?<9;9<A<=>><-9<<;895=9,57=?4: +@853_888_1016 +TACGGGGGAAGGGCATCCCGACGTTCAGGGCTCGGCACCACCCCAGAGGA ++ +&(,,//6)))'<&/9&')/,,)(,&,&&9&<)/'3,),/&&)7:)(/),/ +@853_943_830 +TATTTTTGGAGTACCCTCCTGTACCAATAAACGTGGCCCCGCCGGGTGCA ++ +61)5/6,34'20)%@#)#<%#$<)6+33&6&')4&0'0*(#'215.$'9/ +@853_944_156 +CAATGTCCCAGACGCAGTACTCAAAATTCCACAGTCGTACCCTGATCGAA ++ +;;==<<A>>>??<8=>::;?=A=<==>:76;>;.99>91?<>:.=<>3<: +@853_946_129 +CGGGCTGTTTATATTAATGCTCCACGTCCTTGACACGCCCATCTTTGCCG ++ +>?A<>:><5>=>9=<>9?<>:=;8>9=>8>;<;/;:>@:?3:9::?4815 +@853_946_1345 +GCGCCCGCCGTCGGGCTGAAGAGGTCGGCCCCGACCGCCGTCACCACCAG ++ +8386936:688649:8;80:8#,#/,#1#-3#,#)4)2#42)&&12'2%/ +@853_967_1892 +TATAATAGGTAAGTTCTGCTCGGAACATATTTTACCCCATTCTGCCTACC ++ +8;64;9:878<=<9;:8>5:;9<>:;>769&;1://6&8;):1890:471 +@853_968_485 +CCCGGTCGTCCGTTTGCGGTAAACGGCAACACAAAAACCCCAACCTTACC ++ +<=?;>==@<;>;<=><<?:<=?>=;?<>>=:><>=>7;>>7;8<::8:>< +@853_968_835 +ATAAGTCATGGATACGGGAAAATATCCTTAATCGGCTCCGGCGCGGACAC ++ +6A;<:<?:>:@=><>>?;>;<8>>=<::>9<<5<==<:==<84>;=689- +@853_968_1657 +TTTTCCAACAACGAGCTGACTTTAATCAAACCTTACCGAATGTTGTTATG ++ +;::88<9<99;8<<6<63##+$&%*#&,#####($#$#,*$##)'&)%%& +@853_985_616 +GTGGTGAAGTCAGCTTGTGATATAAAATTGCCGCTGCCCCGAATCCAAAA ++ +A?@><9AA>??A@A8>@?<?;9?A<A<>=>?<=><><<@5@>7=9@?;>; +@853_985_1608 +TGTAAGCTATTGATTATACGCCCAGATGGACAATCGACAGGAAGGGAGGG ++ +<:99:7<::<:>,<<;=:<97?5/:/;:2::::58<921;>:::<=19=< +@853_991_1890 +TTCCGGCGCCAAAGGGCATCGAACGTTGGGCTAAACCGTGGGACGGCGAC ++ +<8::/7A83(0)859;1;9663;18=?==>,:;7)68(/664'6%:9$'* +@853_992_1006 +GCTGCACATTGCGCGTTAAAGCACGTACACCCAAGGCCTGTATCCGGGCC ++ +5?<47@86=66>247>==7=<58<6>81:<:89=7;>6<7:288369/88 +@853_992_1044 +TGCGTCGTGCGCTACTCCGTATTCCCCGGTAGGGGAACCTCGTAGGACGG ++ +&/5-<)&(':4+<3838&&4&7'1-17&,/11044//$&,%8,%$4,-%# +@853_993_143 +CGGAACGAGGGAGTATAAGCATAGTCCCGCATCAATAGACCTATGGATTT ++ +<788::9:8:77>3,6;<768:?:39<=:611>9751:;8:55895(>;3 +@853_996_488 +TGCCCCGTCCACAAAACTCTAGACACACGCCGACCTTGGCAAAAGAAGAA ++ +.&'6,#*<(%'8('(,8.4'.1*9)81-0(*0$&2+-)5,0/,1*21#%* +@853_996_1656 +CACACTGCGTCTTAGGCTATTACTCAGCATAATAGCGACGTGAGCTTAAT ++ +7A;9;88;598:88;:::9=:;999;;74=7=;;8;9:6:;8:86&43:6 +@853_997_740 +GGGGGGAGATCGGTCGTCCTCGCGATTCGACGTAGGGAAGGAAACCGAAC ++ +9&5;'.1')&(4&2&(,'))=&,,-.&+,&)(.,7/2)(4/-'95,4,<3 +@853_1026_2018 +CGGTCTCCGTACGACGATACGCTTTACGGTATAAGCCAACTGGAGTGGGT ++ +6<7=7;6,7=(6928:#;#.8#$'7###4(%/#$.'')0'3$(&)&(2** +@853_1027_1303 +GAATTATTCTTTTTCGGCTTACTATACACTTTACTAAAATCCTTAAATTA ++ +*,10,,;0##3##&#%&#&(%##&##$&#%####%%&$#&#####$##$$ +@853_1055_941 +TCGTTATGGAATTATCGATTCCGCTAAGCACTCGGACCCCAAACGTACCT ++ +AA@<@@AA=?@AA?@A@@@@?@A8>>@A><>77=>>=>=>>?=A:<1>8@ +@853_1056_37 +GCTATCGACTAGTGCCCCAACCCCCCTTTCTCTACCCCCCACTTTGCTTT ++ +:):6</60'42;;,&51:'0:;5/6;9;1155,461:)*-&,&,&&74&( +@853_1075_559 +TCCACATGACCTCTACAACAGCCTAAAAGTATCAAGCGGCCCAGGTCAAA ++ +86*0.#&1*,4#2'&/'%1)152+02'9#))&)%&*&'%+*0#'#&-.$0 +@853_1076_58 +ACAGGTCTAAGCCCGTAAAGTCGATCACGGACGGGTCGGCTTATATAGGC ++ +78=89::;::8<:3<<;<9<8948;73:<<59::8:96:=(67881599, +@853_1091_1124 +TTGCAGTCCTGTGCGGGGCGGCGGATTCGCTGCCTGTGCTGGGGGGTGGG ++ +6;;;<===<@9?4:A<>9=>8;=<6=>/5578))2.&''(&%$$-+./$, +@853_1092_230 +GAGACGAAAAGATCCAAGAAAAGAAAGGCACAATCCAGGCACGAAGTATC ++ +1)>,3&3;//,2=-9(7=2:+5;/)*4791%76,93595+%587/'8/)0 +@853_1094_215 +GCGAACAGGGACGCAGCGGTGAACGATTTTCGCCTCCCTCACCGACCCCA ++ +8;8.,:/*2./:*#3.2+2'(82&)$&266#4)(2/'*%1%$4'1*-:.3 +@853_1094_1720 +TCTAAGTAAGCCTAGCGTCCCTCTATGCTGTAGTGACCAGAGAGATTGTC ++ +730,<8814/7479>7<7/1=;/:)=2;;,<<<;55=;7<==8/,:;&7' +@853_1138_1582 +AAGCGCCAGACGTGCAGCAGGACCATACACTTTAAGTGCCCACAACGTGA ++ +:99=?776;919@=<7=;:>799:97:=9:;5=979.;9:4/:919.>7< +@853_1139_914 +CTATGAATCAATTTGAATAGTCGTCTTAAAATATGGCACCAAAAGCGATC ++ +<(),)&6:$&>'8)('$&5)$*'#+'1#.6,)#$1&('',&6&+',&&+/ +@853_1144_824 +GCTCGCTCTCAAAGGGGAGAGGGAAAGAGCTGCTGGGCTGGGGGACCGTT ++ +'(')%&,:4'.+4.:4(/028:9;:;01:;/6-(8344)/#++1),&9)& +@853_1145_305 +GATGTCTTACACCTTTGAGTACTGACAGGAATGCTCGCCCACATCTGGCC ++ +=?=<:><>>?=<;;9:=>=<>><==<=;>?=;==8:=;>=6>388=>;=< +@853_1148_420 +CGAGGAGCTGAGATCGTCAAAAGAGCTGTGCGGAGTGATTCCACCAATTA ++ +9;8939<<:5:>6=)8>:;64;<925;#25,:4618;1962<%.*3:3:2 +@853_1148_1437 +TTTTCCAGGTGGCGTGTCCTTAGCAGGCACTGTGATGCTCCTTGTTTAGA ++ +3875((77'%//28,(884:9/(;$59(03%%(5$'%+)$)&-.7513(4 +@853_1149_239 +CTGACCGCTATAGCGTGCGGAACAGGGGGGCCCTCTTCAAGCGGGGAGGG ++ +3<51,*1*)88&%:1%+)%8'$//0.15*4';195/&//'9;(&38)7&- +@853_1149_1929 +CTAGTACCACCATTGTAGTAACGAGGGCCGTATTTAGGAGGGGCGCAAGG ++ +><:<=98>;;>=<>><@@==>=A=<<;><;>:><>9<?<:><<<;>;<>< +@853_1231_1371 +ATATCTCCTTCCATTTCTGCCTGCGCCTATGTCCTTTTAGGGGTGTTTGC ++ +,/0,.#'#$954),&#-',;.*##*(*.'82#$#2*$*#(%%&###,'#+ +@853_1231_1635 +TTTTGTAGATGTCCAACTGAGTCTGGTAGTAGCTTGAGAGAGACCTCCAT ++ +<:<<9=,:9;77:;9949;59:.=;:8798937;977<53*2654<095; +@853_1232_516 +CCCCCCCTTTTTCTCAACCCCCCAACCCCCCTCTTCCTCAACCCCCCAAC ++ +586))'&,(*'&(+)&&.5/)&)5*-&/4,&&&4&&&'/0)&16-/%,)4 +@853_1232_940 +TAGGGCTAAGTGTCGTGGCTGGCCCCCAGCCAAAACTTTCGCTTCTACCC ++ +>175()<>>1&','95'/A&3,/?315@,&/',,,&&5,3/&1)&1'1<' +@853_1236_169 +GGTGAGACGTTTATGTCATTTGTCAGTGGCCCCGCGCGTATTGTGGCGAT ++ +=<?5,5441<:<2:,:6,=8:789555:4,65:599236(;<$8*.-2,8 +@853_1237_10 +AACAGATAATACGGCCTGCTTTGAGGGCTAACTAAAATGGGTCAGCAAAC ++ +(,,;/)&5/()&=)3(&;<:3)=3=)/=&=-.8,9;<=5;,&141<,;/< +@853_1242_1158 +GCATAAGTACACAAACCGCAGGTAGGGACCAAACCACAGGATGGCCGTAA ++ +A=5:<A;9;>:?=96?@;8>9>;:<=:=;<;?>;:;:==;>51:/)11=< +@853_1243_871 +CTGCGGGTAACGGGATGGAGAACGATATTTGATGAAGGTGGACCAACCCG ++ +1),)*=3/4=,9<?,%46//./+1,&1/1,)<)8&,/7(>79,);668); +@853_1265_969 +CGGCTGGGGGGGCGTGATGCAACGTTAAAGGGAGGCTCTTGTCAAGAGAA ++ +$<)'(')1.8:)()8(,&<//55,'&3,))'846164.001-/+381/72 +@853_1266_828 +ATGGGAATCTAGGGCCGCAAACCTTAGTTCGACTCTCCCCTATAAATTTT ++ +9?A?AAA@7@?>:8>>AA<@>A?>==?>3?=@<9=?A==>>,7&<;4>,: +@853_1267_170 +TGAAATCGGGTTTATGCCTATACCGAGACCGGGGACCAACTAGGGACGGG ++ +30:65905%/#52:2&3(7,532).4;,,+&3$+-(2)50*&0%'&1(1' +@853_1277_1774 +GACTATAAGCTTTGAGGGTTGGAATAAATACGACATTTGTTTGGGGAAGC ++ +>@?7@?>>?8>;;=?><>?==<?,<3=><35<A>6<7<985;<9778@:, +@853_1278_1160 +AAGAGCAATGGGAATGATCATGCCGCTGCGTAATGGAATGGAGTGGAGGG ++ +A=<<@AA?>@@@?;?>:>A?>?AAA@7<<,,&//1(+)&9+&&&85(1&9 +@853_1280_287 +TACGTTGAGGTGATAGTTCGCTGTACTTATGACAGTAGTCTCTTAGCCGG ++ +><?>@AA:=>AA:>==?@A@;@<@<??>;>=9<<<?<<?5@9?=:6?9:= +@853_1280_1640 +TGGTAAGACTCCTCCTTTCGGCCCCCAACCCCCCCCCCAACCGAGCTGCC ++ +A;?<;<@<<>>A=44:??:<>:=74<:>48;=583==9/8=9:228122( +@853_1280_1971 +TATTTGGTCAGGGGCGAGGGCGGCGGCTTCAATCTTGGGGCAGTGGGTTG ++ +)9177)6,3)):16&'/,1:6<()?))()(>5><(1=<?1.&)>/6&(1, +@853_1281_1171 +AGCAATCAGGTGGTACACACAAGTATACATCCAGGCTGCCTCATCAGGAA ++ +<@:<?;A<:?=A=/:=<?<<>>;9:<=:>94<:3;151*'&2:%(%&)+' +@853_1289_1050 +TGGGAAGTCCTAAGTCCATTACAGCGAGAACGGCAAATGATGCCATTGTG ++ +75933<740)::053<:7;&>7;:#4>4475:9/3<<72.9883)&77&2 +@853_1290_58 +ATAAGAAGGGGGTTCAACGGAACCGTGAACGCCAACCGGAAGTTAATCCC ++ +)<:<;9:>9:6==<90;<<9;;=98<;=<:1=<9.7<;6<1;>8;;<9<5 +@853_1297_514 +CGGATCCGCTAGCTAACGCCGCCTGGCCAATAACTATATTTACTTGAGTA ++ +=>>3@9=99==>;1;;=<8:8?039;<718<8-6:6<39;=69:=5;411 +@853_1297_1934 +TAATTTAGGTACGACTAACTCAATAAGCTAATTGAATGAACTAGGACTTA ++ +#&6##)0$)#4)#2##44&###7%/2##%1+#$,#*###$##5$#-###, +@853_1311_394 +CACGGGATCCAAATCGACTGAAATGGTTAGTTAGGGAAGTTGTCAAACAC ++ +&5,,5,78&8/>?9A3??8@>@A:==?>:?<=@<?:>?<:/;>?A@?<)? +@853_1312_213 +TCGCGAAGGGGACCCGTTATTTTAATAGTGCAGGGCATAACATTTAAATA ++ +6?;==?@<<==A=;=<;8;99:8:<6>:6;<=:3(9/7986)5(./27&= +@853_1321_1372 +CTTTAGCTCGCCTCAATGACCCGAATAGCACCCAGAGCAAGACTCCGCAT ++ +5,7),=/'16=1,,':&,5);118181/18<'6;6/1@9,<9)>,,,&>( +@853_1322_846 +CTGAGGATTTAAGCCAATAAGACGAACGAACCGAGAAAACTTGAAAAAAA ++ +2;;;::5;#44)5-74,816;#0-4('(-5,$&-;6($'27,-14:&8'7 +@853_1359_649 +GGAGAGGGGCTGCAAAATTTACCGAGCTGCTTCGAGGAGAGCCAAGGCGA ++ +<9;5<=;;::6;:;;1?88998<:>4:*91),4.5$7#,4'#$(,5.%)2 +@853_1359_2004 +CCAGGGAGCACAAATAGCGGCGTCCCAAAGTGCTCCTGAGGCGAGCTGCG ++ +?=<<A@=A=>>.?<?;71?A>=<><?2<8>=:749898&=<57&;:49&, +@853_1360_1130 +TGCTTAGACTTTATTGCAGTCATAAATACCTATAATCCTTTGTGGTGACA ++ +>A@@<9?A:?>>?8@68?=>>9>/9<<44193577>;:;8?#,5.##4,) +@853_1361_389 +ACAGCTGTATCACGAATGCCCGTCGTTAAGAACTGGATTAAGCCAAAGAT ++ +7=9=?>8?4>@7;:==A<?A=<A87=A<<>89789)>6:9)=647):49< +@853_1366_1495 +AACCATAAGGCGCTAACCACAATCGGTGACACCGGCTCCAAGCTTAGCCA ++ +?;<9)6)&'&;+22'80:-%:&/3.<&)0(;):69;#)67;(8+&<-'%8 +@853_1367_802 +GTTGTTATAGAACAGTCAACCAGCACTGTCTAAGTGGATTTCCGTGGCGG ++ +=<?;$%&<<&(5>='(3><+648A+*:<@#46><#70<>#*.<3237=;% +@853_1382_1227 +CTAGTTTTTCATTACTGGAGCGTCAACAAGTAACCAGACTCACAAGCTAG ++ +;::::899::898<:96:<99979<;99=93:/999:19667):611.<: +@853_1383_1269 +GGGTGCTGCTGTCTCAACGGGCTGAGGGATAGCTGGTGGGAGCCCTTACC ++ +,@)':/)>6:(*'*9&';-(:),4((/,#31;7&/532*8,5:5*75,+1 +@853_1395_1324 +ACTTTCGCGGCCAAGGCCTCCTCCCTAGGGCCTTCCCGACCCGCTGCGGG ++ +)9-',&9*3)9',(1%6%7/4681)11&+:-1/4205()&3',,+$0#%% +@853_1396_1014 +GGTCCCCTAGAGTGGGGCCTCGAACCTACAGATATTGAGTCGGGAGCCCG ++ +@<@:===?<;==98<:9>9:=:;@;:;=68::<:::;>:::><<863>9; +@853_1412_1664 +TGGCGAATATGTCACGACCAACTGACAAGTTATTGTTACACTCCACTATG ++ +73A/A(<5,5585/@@4=,)383A,3,/6(3,5?98318,9@1/,9:11= +@853_1413_877 +GACGGTCGTCCCTATTGTATTCGTCTCTCCGTGTCGTGACGTTGCCCGGT ++ +&)#*648#,9(.#3&&(#9.2,#/%3)#&555#).%3#19-4#4'3,#2+ +@853_1437_116 +AGCTGCGGCAGCCGAACACGGCACAAGGTTGGATAATCACCGGAAGTGGA ++ +$;,)42'#2(#&,,#%#2,2%,',42#$))#*428#%$2.%$%4%*#)%& +@853_1437_1533 +CAGTATGGAGGTCCGATGCCGCTATTTATGTCGCATTAAGTTTAATTGCG ++ +>@<?:>>8=<:=>?=;>?=5<>:98<A9;6852*+4&$#$%4(#-4(*%# +@853_1486_1272 +TCATGAGTGCGTACGTACAGAGCGCATACCTCGCACGCATTCGTAAAGGA ++ +93396@554737/373:5;5,:<=/;:1<1;5/<(/718:<7.<=,<1.7 +@853_1487_496 +TTTATTACGGGCGACGAAACGAATGGTATTTCCCTTGCGTTTTTCGCTTG ++ +<,'+856638:)0*.,+&.;7&1+;5-&1779<0:+3)/&+;1&,7()(( +@853_1488_605 +CCCGTAAGGAACGGGGATTAGAAGGATGGCAGGGGAGTGGAAACGAAGGG ++ +(%/)'(32+'))1*6776&2%)8&,7)71'2&$5+%))724&0)$('&(' +@853_1489_374 +CTCTTCAAACTGACAGCGCAATGGATGAGGCCACAAAAAGAAACTTTAAA ++ +>8786=:8:3:2;;;6(=99.3=5*/,%'(+#7121074(25$0,+%,27 +@853_1493_452 +CGCTCTCCCGATTCAGCAAAACAAACAAGGCTCCACCGTCCCGGGGCCGA ++ +'$),&/'53(%$((6'*'(&+%694&(2.1'&1(3&2'9/%)(&)()'(/ +@853_1493_1908 +CATGATTACGTTGACAACTTGGCCACCAAGGCGTGTCCTTTATACCACAA ++ +;@<;?>:::===;<>=;;==<?;==>?88<=<<9;<=?<9;;<7=:9<<; +@853_1498_1797 +CCTCAGCGCCACCCAGCTTGGAAAACTAAACAAACAAATAAACTTTCACT ++ +&&&&&#&#######&$##&########$&$###&$$$###$$#$#$#### +@853_1499_1261 +ACTGTGCTGCTCGGGCATTGATTGTGAACCATTCCCGGTGTTAAATGAAA ++ +:;:=<=;<<5?>><>A9>;98<9<:<7;&7:9<:9<65/)<?&6)=7&2/ +@853_1509_820 +GCAACCTGACCGTTTACACAACGTGTGGAAAAGAGGTGGGAGAGGGTTGG ++ +18;:.49;5+6/<=879672373=.:;;47$'%06262%562%':5$5&: +@853_1510_448 +ACAAACAACATCAGGTACCCCATAATCCTCCTGGCTGCTGCCCGGTGCGG ++ +6280647712'4:*,/72/(,2'28)43%0%)4'+$%''########$## +@853_1511_561 +TTAGAACGCTTATGGGATCCGCTAGCTAACGCCGCCTGGCCAATAACTAT ++ +<?;8>>=<9:<599<<,<@;<5@=/<6>?;<;;<@85=<A>,,879296, +@853_1511_1886 +GGATAGTAGGAACGAGATGCGGGGAACCCGTTTGGTGCTCGGCGGGTGTG ++ +:A(>/2;&>='7&>::(1678>>:1&(<::11,.<8,(),8>%8</):(< +@853_1530_202 +GGTTCATGGCGGGACATGAGGTGCCATACCGCAACCCTCTAGGCTGATCG ++ +/9::8:7;58;0<%;;9=(3;8<1;73;16;1=57686/585:30;/<61 +@853_1530_1652 +TTTGCCGAATATATACGGCTGGGCAGGCACTAGCTGAAATGCCGGAATCT ++ +85;6%-0<#)75;)165:2597<'0;:;%(;3:#5;*;/2894$&5/5$+ +@853_1569_1617 +AAGCGAATACTGAACCAACACAGGTTAACTAGGAAGAAAGATAATTAGGC ++ +=A===>>;<><>A@@;AA9>8A>?=1>@9<7:8@@(>>@33573;)<&&: +@853_1570_1472 +CACCGGGACTAAATTAGCTTCTCGTTCCAGGCGCATCGGACTCACGTTAT ++ +@A=?<A?@?A=9=AA=@=;>?>?<@=><=:<@9=,A?;<<7<=61;>9/? +@853_1585_323 +GGTCACCCTTGCTAACAAACGTAACTCGCACCGATCCGAAATAAGTTGCG ++ +=;<<78<9;<:<:9<88::=<,:;;8/889<79:4;12:;,/88582.:9 +@853_1585_2023 +AATAAATATTACCATTTAAGAAGGAATACGAAAAGACGCCGGCGTCCACT ++ +:A=>5#:==<+=<==)=?<=&<=<>%<<?;)<=<=#>9<:$<;;:&?3<5 +@853_1603_500 +CAAGGAGATCCACACACCAAAACACATTTCCACTATGTTTGTGTCGCGGC ++ +=><:=4:;498<9<:9;8:=;>==7;;56;6>;75:9975574624<:1& +@853_1603_1995 +CCAGGGAGATCCTAACGTGGAGCCGCGAATACTCCCAACCACCTATACAG ++ +:;;;>=<9A==;9:=;6::?:9@<@:8<<;:6><@<<9;@595:684279
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bwa_wrapper_in6.fastqcssanger Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,840 @@ +@853_7_53 +NNCNNNCGNTNAGTNGGNGGNGNGNNGGNNGNNNGGGGNGGGNGNGNGGN ++ +!!0!!!10!)!)0)!,-!##!%!%!!##!!'!!!%+&)!%$/!)!$!/(! +@853_7_78 +NNGNNNAGNGNGTGNGGNCCNGNGNNCGNNCNNNGGGGNGGGNGNTNGGN ++ +!!#!!!5,!$!5&+!#8!)#!5!%!!3%!!'!!!$$8+!&)%!)!(!*#! +@853_7_88 +NNTNNNGGNGNATGNCTNGGNGNCNNGTNNANNNGCTANCTGNCNGNTAN ++ +!!1!!!42!5!,25!24!77!4!3!!81!!,!!!5147!)/6!,!,!1&! +@853_7_132 +NNGNNNGCNGNGAANGCNTANCNCNNTANNANNNGCCGNGAGNGNANGGN ++ +!!&!!!5#!)!)&+!2&!',!&!'!!1)!!1!!!4()$!/&,!'!'!0$! +@853_7_141 +NNGNNNCTNCNCCGNGGNAANANANNAGNNGNNNGGGGNGAANGNGNGGN ++ +!!,!!!),!5!3)+!//!),!3!9!!&/!!+!!!**#)!.)(!(!(!43! +@853_7_146 +NNCNNNCGNGNGCGNGANCCNGNCNNCGNNGNNNCTCCNGGTNCNTNGCN ++ +!!1!!!33!4!#15!7(!51!1!3!!.5!!5!!!/)/,!&-/!,!.!4,! +@853_7_269 +NNCNNNGCNGNGCGNAGNACNGNCNNGCNNTNNNGGCANCCTNGNTNTGN ++ +!!3!!!/.!+!*4,!42!)8!2!3!!62!!0!!!84;)!)7.!5!/!&%! +@853_7_321 +NNCNNNACNGNGAGNCANCCNANGNNGGNNGNNNATTGNCCCNGNANGGN ++ +!!$!!!&'!.!*##!6$!#1!+!#!!.+!!)!!!36(#!*5'!#!4!+(! +@853_7_386 +NNGNNNTCNGNGCCNCCNTCNGNANNTCNNANNNGATANTCGNCNANGGN ++ +!!;!!!86!=!;9=!%5!58!<!2!!62!!&!!!&3:&!//8!*!7!5*! +@853_7_405 +NNGNNNAANANAAGNTCNGTNANGNNTGNNTNNNCATGNCGANGNCNGGN ++ +!!=!!!;:!>!<8=!9<!:<!=!>!!;8!!;!!!;//1!&(&!/!'!*-! +@853_7_411 +NNCNNNAANCNAAGNAGNCGNCNGNNGGNNGNNNCAGANTCGNGNANGCN ++ +!!$!!!-#!#!*#+!,&!2*!#!#!!%'!!)!!!'$)$!/-#!#!'!,+! +@853_7_445 +NNGNNNTTNANGTTNATNTCNANCNNCTNNGNNNAAGANGGGNGNGNGGN ++ +!!&!!!0%!#!,&'!,'!$$!&!,!!&)!!'!!!..*&!#,7!1!.!10! +@853_7_469 +NNCNNNCANTNTCTNTTNTTNANTNNAGNNCNNNGTTTNGTANGNTNTGN ++ +!!#!!!%%!$!))+!$,!*%!.!(!!.#!!#!!!#&##!##&!#!#!##! +@853_33_1583 +CCCGCGCTCCCGATAATATAATCACCGAAACACGAAGACCAACAGGCCCA ++ +),+&#,)',$##2$),%2'+#$)2),#$(+#+##&*%(-%1%#(##$$2, +@853_33_1649 +ACTTTCGGTCTACGAGCGCTTGCTACACCATAGTTACCAAACGCGCCCGG ++ +:286623:<88:;98367:997<87>/;:7/5<<69&<1;447999923< +@853_34_1182 +GGGAACATTATACGGCTTTCGCCCCCTAGACCGCACTGTGTTGGGCCGTT ++ +>>>:9<<>><;58987;::9718859:2;75'3%(720&14%6(,51-&& +@853_34_1358 +CTTATATTAATGCTCCACGTCCTTGACACGCCCATCTTTGCCGTGAAGGA ++ +A:8:<<<:<<5==2<6A;:8:>;9;;;==:8=?;:97:;65:5;:2><13 +@853_35_596 +GGCTCCTATTTTATTACGTGTCCTTCTCAAACTGACAGCGCAATGCTAAG ++ +>978>8=9;>;:2>;;85=3;::=;::7:8:68)<5;859>?<>:<6<58 +@853_35_669 +TTCTTATAAAACCGCTTACCCCCTAGGTCCGAACATCTTGCAGGGTCTTG ++ +,)&#<&38':&)-2/*4-'*+,5:0(3(+.+&,)9,&%1%*'(+.+-&&' +@853_47_795 +CGGAAGGAGCGAATACTGAACCAACACAGGTTAACTAGGAAGAAAGTGGA ++ +>?@;;?>=A@A9:>;:>=<;=>::88<;=8=<:95>08=5.(364,)1,) +@853_47_831 +TAAAATCTCGGATGGTTGCCTTGAACAAAAAGACAGCCCCGTCAAGGGAA ++ +5A,&5,))%(()&,13(.9<2++8,>99*(%184,=/&5+)6/)0.&)64 +@853_56_1228 +CTGCGAGTATCTGCTGAGTTCAGTCGGGGGGGGGACGGCTCGGCGCAGGG ++ +@;>?=?:<==:<??;>>?<<?:=:6621.-&%9&4&%:-&/(5)2(&5-( +@853_56_1324 +ACCATGTATGGAAAAAAAGAGTAGAGGAGGGAAACAATGAAAAACGGACC ++ +/6+58//.61366638/)&988).5::15578427=88&0:>;59:(6;< +@853_82_2023 +GTATTAGAATTAGGGAGCCTAAGAGACGCATAAGCCGCGTACAGAGCTAG ++ +9;97><<75?<26754=8=<:8?:;;>9;69;8589?17=4566595:57 +@853_83_197 +CCGTCTCCCGCGCCGCAGAGACACTACTTCCTCGCCGCGGTGCGCCGGGC ++ +/9;58179583997;5591<26;797=55:995$)&$'#-$(&&'(*(%& +@853_112_119 +TCCCGGGACAACGGAATTAACAACCCCCGGGTGGAATCGGGTGGGAGGCG ++ +))&)994&,/1(+-+.-('(02)145,.&42,#&).,&(-0.%,',%:(0 +@853_112_253 +GTTACACAAGCCCTGTGATAACCAAGTCTGACGTGATCCCAGTGGAGGTA ++ +:47675926:45/<9974:+56:;64:;<81;89:<<;56855687<5/& +@853_148_1347 +TAAGGCCCGTGCCGGTCCGTCCAATGATATTGGAGGAGTTCCGGAGCAAG ++ +A=;@>>?=@@A@?A@>@A@=9?9<A@;9>>>>>7;=8<=;8;?;18?62= +@853_148_1509 +TGAATGTAAATTAAACGGGAGGAAAAATCTCCCCACAATTGAGGCCTTCC ++ +./<&1=35>,/3(6,,1<3*)7,53)69<&(A<8+(;91).8&+7(:&<7 +@853_157_314 +GATAGCAAAAAAAGGGGCCGAGCGCAAAAGCCGACCTGAGCACAGACGAA ++ +9;:5461242#)#*1####('$$$##'#%#'$$%###/$%($#'#$$#+# +@853_157_582 +AGGAACCGCTAATTACCCCCCTTTTTGAGCTCATAGCGTAGCTTATATTG ++ +:9:=>=<:>7>@<:8><><;><:;=;:67<5;4;?4<0<.9=,<6:>,:, +@853_158_402 +TCACAGACCCGAGGAAGCTTCGTATATTTGCCACTAAGGGCGTCGGGGGA ++ +5;&35,<55<8<6;<3646:618477::95<92=752071+2339-.#11 +@853_158_569 +GTGACTACATGAAGGTGATGAGCTGTCTTCGGTGGCCACCCTCCAATCCG ++ +69<7979/5>9:4;9:9+::880:8;37<49<:3:<='6:9=2558<.03 +@853_216_501 +CTTTTAATGGGTCCCTCTCTTACAAGGCTCTGTTAATTTTTCCTTTCGAA ++ +85<85,7=47;:627;<6<4<::445934*:5<2)$9&-$273#/#6-.* +@853_216_648 +AACTAGTGAACTGCCAATGCTCGAAATATTCCTGGAAGCTGTCAGAAGAT ++ +=>>;==<;?>8<:?1??;;19;;>?>;?;>><<<:>=@=<:;;A6>>@;> +@853_218_1907 +GAATGGCTTGACAAAGGGAGAAACGCATATCCTGTGATGTTATTTAAGAG ++ +5).5<9?642>9+;9<;;:28=4886909479&7,3;	+:,6'5,(&/ +@853_219_184 +CAGTAGTTGCATGAGTCATGAGGTTGGGTTGTTGGCAGCTGTTGTCGGCT ++ +'*)%%,,##3,1+,,#'&)#+#/-),%(&+$)%#%$&(&/#&(#%#'$%$ +@853_233_615 +GCCTTAAATCGATATAGTCGCGGGCCCCAACCGGGCCGAGTACACTGGGC ++ +;@),<%8)(&<(0)<&<)&53.*%/,5,6*/6;.)+>,%.,7,#,,*$%$ +@853_233_834 +TACCAACCCGACTTGACCAAAGATAACAAAAGTGGAGCGAAAGATCGGCA ++ +?=>AA=<>@A:=<=A><@==?=@3@@>=A>?>;:,<>:3=<>,:35>973 +@853_244_474 +CGGACAGAACGAAAACTCCTAACAACAGAGCTGAGCAAACCAATCCAGCC ++ +*$(5.+###%$$2*+'#$('/(#*$$$$0%'$$3',$(*#&'4(%$#/$$ +@853_244_781 +GAGGTCATTACTTTTTGATGCGATATGTCAGAAGTCACCAAACAATTGTA ++ +>:???<=A@<?@AA>>;5===<5?:?8::==.(8?/26;;77/:5>4(>3 +@853_255_146 +GGGAAGAGCCAGGGAGGACTGGGGCTGGAGCAAAAGAGGCGAGGGGGGCG ++ +#$##$%###&##'#&##$###&#&$######$####%%$$/$'%$'#$$# +@853_255_403 +CCCAAAATATAATTAACAAGGAGATCCACACACCAAAACACATTTCCACT ++ +;88>7988<999==<9=;<6;9:9956=.40:<74<;=64,=:;95)4)% +@853_256_428 +ACGAAGCGGTGTACCTGGCCCTACGCGGAAAGGGGGAAACCTTCCCAAAT ++ +@?8<A:A969=<:71?;;<5==>81><1<&??:264@>>/=<-819><() +@853_256_834 +ACAATAACGTATATCACTTCGGCGCAGCTAGGTGTAAGAAAACAACAGCT ++ +4;3;>:<59A8@89:98>89<9;84985>.7<>3;9;9&56=84)/<9*1 +@853_266_697 +ACATGACAACCTTCCACCAAAAACCCGATGCGCATATATAAGTGGACTTG ++ +?=<;>@=><:<:;6<>?==;=?>=?;<;=2=>4<;;;9;:::6979;<:: +@853_266_1092 +GGCGCGGATTATTGTCTTAGCTTTGCTACCGTTATATGCGCTTGTCTTGT ++ +,318925,37;9,999<52622989/:7220#3$247,',*1'##,1,#5 +@853_279_1056 +TGGAGGGTACGATTAGAAGAGGAGGCGGTACAAATAGACAATTCCTCACT ++ +=<;<<=;><:>;=<<=>=:<<>=;<;=;<==8<87<7@8=<9<9;:1:3: +@853_279_1330 +GGCCGATTCTCTGATGACAGTATTCATGTCGCTTGATAGTGGAGTTGCAT ++ +=<>@=<<:>=>9<<<<=A49;=::?=;<7A;;;3;;:;8:;;:2:58:&; +@853_292_158 +AACTTTTCTGGCATTTGAGCGCGTTTTGGAACTGACGAACAGATGCTCCT ++ +===9<<;<=<<>:<:=<>::7=9<=:;9:>;;98=58>;>4=@;:,;=1= +@853_292_700 +GAAACAAGGTCCCCATACTAGCTTCCAGCGAAGTTAATGGGGACCAGCCG ++ +6;8489::=9;?9859?7=7484=8<8:83;<3>1:7=64=,8;/3:5=/ +@853_365_890 +AGAAGTCCGGGCGTAGTGTATCCGAGGGGCAAAAACTCTAACAACGGACT ++ +=9?=>7:9;A=9==??:<8?<=9@6<:>>8<?=>:=6:=<?8;<398:8) +@853_365_1447 +CTGAGATCGTCAAAAGAGCTATGCGGAGTGATTCCACCAATTAGTAAAGA ++ +:8?6=<<;<>=8=;>>:::;5:89:5:;=</7:7<4787;099);557*; +@853_368_1718 +CTCCCCTCTCAGCTTGATTCCAAACGCCGGGATCTAAGGGTAATGTTCCG ++ +;;A>A>?A;@@<><9A;6:?A:=1><<A@6=5515A<>8397:@1<6<3: +@853_369_74 +GGGTTCAAGCATGGGAAGTGGACCACAGCTCCCGACGGTCCACACCATCA ++ +=9756::884:54:791:47358965758589965&:94,&969;(5143 +@853_375_367 +GTTTTTTGGCGCGAGGTTTGCGCAGAAGGGCAAATTCCGGCAGCGTCGCG ++ +5&')&(9<1,=?>:+,)6)&7,&(05/)1,',(0'&),&(6/7,,5,,44 +@853_375_856 +GGGATTGGGGGTGATATACGATGCGATACTCGAGTTTTTCCCCCCATTAA ++ +;?>8@;>:?:A7:;=@=9==<?=A@<=8A:749;:><<>8;7>=>6<935 +@853_381_1334 +TGGGTATTAAGACACCTTGAGCCTTGGTGGTGTTATGTGGTATGATGGGG ++ +@=>@4)%>?=;,@?:86>?<=%>?=;';7%.&%&,#%'2#&%,+2&#-%* +@853_381_1648 +AGAAACGATCACAAATAACCCAAGTCTCGCCAAGAGAGCTTGATCCGAGA ++ +8:9:;<;::::;65&:178(:8:517:35$3385)958.$<578%7:7.) +@853_383_962 +CAGAGATTCAACCTCCCCAGCCCCACAACATACCATTGCAATAATTGGCC ++ +@??9;>:=<==:;<A>2<:=A;?5?<==7:>99(:?>@)?956)8<3;*5 +@853_383_1666 +AACCACTGAGTACGTAGGCGGTGCAACCGAACCCCGAGTATTACCTACTG ++ +18$+&,#./,8#8('./99#4(58);.22,;,2,%6,%)(,.,*957)(' +@853_389_1983 +TGGAGCTACACCATCCCCTTAGGAGGGGGAAAACGTGGGGTGACGTGGCG ++ +715;6741498/6459/6448/6573'569<98845/6:9$),4%.560( +@853_390_660 +CCCTTATAAAGCTCGTAACCGTCAAGTGATCAAAGAAATCAAAAACTCTT ++ +>?<::>59A7:=:<?<4::897>A@:48;<<8;;5><=67=,><=7(546 +@853_392_1916 +GATGCATATCCTGCAAAGCACCAAGGATGGAAATTTGCGCTAAATAAGCC ++ +@;@A?>A;?@A>@@<=9A>??=<;A@9>A?=:;?=>;?<<?;<962&6): +@853_393_183 +TAACCACTGAAGACTGTATAGCGTAGTTTTTCATTACTGGAGCGTCAACA ++ +;;6;<7;::=<;<;5<<6<6>6:>9>>;@==99>1<?;//<75.<3=98: +@853_397_1746 +CTCGTCTGATTGCAGGGATGTATGACATATCTGCAAGGAAGGAATACGAC ++ +?7897:;89;8;088<9/285<0:?79/87;5)777:1<>/7.4.2+,5, +@853_398_593 +GACCCGTGGGCTCCACTGGTCAACGCCGTCCTATATGGCGGACTAGTCCT ++ +(,1&31,+//,&1?0,)(>91),,7(/0(1(3=/1>/)&83:5336:3-3 +@853_423_1430 +CGGAGAACCCACCCGAGAGACATAGGGGCGAGATTCACCTGCTTTTTAGG ++ +>>5:<8<A<=:<=@<=5?:/=:8;7:=9<<87:<897:7891.=%;8/7; +@853_424_115 +TGTTGACTAGCCGCAAGCTCCCTGGACAGAGGCAGTCTAAGCGGTCCGTT ++ +;<<8<<>=9<=?:8:?:?8:A>;3;<=<8;<9?69>99;:;;77;:9/,; +@853_439_1980 +TGGAGCGATTTAGACCGTATTTTAGTCTCCGCCGATAATAAGAGCAATCT ++ +952;8:98452>4=9;:0=3)6/76-666=777+<4::&86.;'7;:+5' +@853_440_379 +AGATCCCTGAAGGGTAGTCGTCCGGGTTACTGCTACGTTTTTCACTAGAG ++ +699<68<=>=;<;;=9:?9=<<<=;9::<,533=889<;19;/5)9:/7/ +@853_443_704 +CTTCATGTGTCTCACCGTCCTGGGCAAAAAAGTGATATACTACAGGAACA ++ +@<AA>>AA>=<?=?=@A@?=;A8>;>@9<>>>:;=>;>:::?,;:<>/:7 +@853_443_1353 +GACGGAGGAGGGTAGTGCGGGGGGCGGGCGTGGGGCTTGAGAACGGCTCA ++ +95:19@9979:<4,82>02:3;5.46:65:5<95<7:;7;:>9*;:<:82 +@853_458_262 +AAGTCATCTTTCCGGGGAACCCCCCGGACCTTCCTTCTCCCAACCAAAAA ++ +>>;>=;<4><=>5;=;>2=>:>1;<><'::8>(=:?5%<=9;29<<=-0< +@853_458_615 +CGGAATGGTAATCCGCGGTATCTGATCGGCGTACTGGATCAGTTCCAGCT ++ +>=<=;<>=<<:<<>??;=9;:?:<=:<<>=::<:9:>89==<4<<88=58 +@853_489_665 +ACGAGGAGATTAAAAAAAATGGGGTTAGATTAGATAAGATGAGAGGAGAG ++ +=>?><@=A<@@<?>>=:=:=;24&&)00+&$(4:%%'(4-#+16#-'1.$ +@853_489_1193 +AGTAACTTCAGCATACGTCCCGGGTTGGGCGGACTCGCGAGATGCTTCTC ++ +>A==A><>@>==<>??<<>=@==?>=>=?<A>:=8?=6=?>:=@1;:,81 +@853_557_600 +ACACGCCGCAAGTCACAACGAGAAGGCTAGGGACAAAAGACGGAGCAAAG ++ +7-0'%()1&'&/65'1'/+,.*&&*17165:+0#-+'.&+''$-,$-&'# +@853_557_1176 +CGGGCTCCCCACACCCACGATTGAGATGCGATGTTCATGTTCGTCGAGTA ++ +A@=????>@=>?=>@>=?9=<?=7?>=<>>?=>>;7;>9=:@;<=:A=;7 +@853_558_962 +AGGAGTAAACGATAGGGCGAGGTCGGCAGGTTAGGGCCCCGAGGGGGGAG ++ +>?>==>>>=?><;>=?=@>;<<277*.6<%'979$6896#&,:8090(). +@853_558_1569 +TGGGGGGAATGCGTAAAGGAGGACCATGCCTCTGAGAAACACGCGCGAGA ++ +&&(?(?(8><;;;;<=;<7<;;8<:9;<88=<:<=::?8,6658/:,181 +@853_563_1263 +CTCGTACTGCGTAATATACAACCCCACGTCCGTTTGGCTTAACAGGAGCT ++ +@A>=?A@><?=A<==@A==?>>=;==>:1<<:?=<=<;=:?=<&:3<3): +@853_563_1776 +GGTCCTGCGGGCGGTTCCCAATTTCATCTGCCCGAACATAATAGGTAACC ++ +@=?=A>A@A>A?>@>>A@>A>?>1@>>>5@?@@8>?@&8><>97(:9:5) +@853_584_1986 +ATGCCACCGCCTTACTATCTTTTTTGCTGACATCACGCCGTCTCTTGGTG ++ +,#$)*)(($3,))$&#,(&#*))&$##&#(%+&'+$,,$2$&(#&#+,#$ +@853_585_542 +AATAGTAAACGGCAAGAGCGACATTACCTGAATCCTGAAGGGTGGGAGGT ++ +:8?=<A><<A:=>>>?9<>>=::<>?6:>==<;:><::3:=<98?>27<: +@853_585_1153 +AAGACCAACGTAAATTATCCATTCGTACGATGCCCTGGGCATTGCATTCC ++ +<>689<?9>59781>9956245:44?6,16=466;77615206+=12$#, +@853_611_981 +GCACGGCAAGCGGTACGGGATACGTGAGGCGCGGTAAGCAAACCCGATCC ++ +;=9===@::A><;<6><=;:@8;;==8<?:<<==<<3=<&>55=9;38=; +@853_611_1451 +GAGAGCGACATTACCTGAATCCTGAAGGGTGGGAGGTAGCCAGATCTATG ++ +728<<8:1-.:;3/:77634/887;683)<596&75:;,188:2:37<,/ +@853_626_841 +GATCCCGGCTGACTTAATAAAAATGTGGCCGTCCTAGAACGGCGGGTGGG ++ +AA@?@A@?@><A>@>AA>><=A=?;<=>;><=<7=>6@6?=>:58(,4), +@853_626_1431 +ATGTAGGTCCCTGACGGCCCCACGGAGGAACCTTAGCTAGGCCAACAGAA ++ +>5<:5897:<;4==:;7>;9;<979>89?<7;;:<9:6<49;8644.1+$ +@853_628_1041 +CTATCGCTGATTTCACAGGAATCGGTCTTATAAGTTTGACCCCTTTTTTT ++ +<9)9<7839<:>/<<;>3'A9<36=<9$#9<8((<=8'&;97'7>;#2(8 +@853_628_1976 +AGTCACCAAACAATTGTAAACAATTGTGTATCTAGACCGATGGAGGGTGG ++ +8@>9<=@<=@:A:;>:<98=9?7:;8;;6:=?<-<;?<77;A9/:8>9,: +@853_630_585 +GGCTGGACTATGCCGATGCGCGGGCACGGAGGGATCCGGGACCGGGAGGA ++ +&#$%#)%&#%#$$&(.##$##)-$&%%##&&.#&#$&-$#&'+'#$,,$& +@853_630_1363 +TTTCATGAGTTAGACGGGCGACTTTGTGCCTTATGAACAATCTGCTGGTG ++ +A?AAA@AAAAA9AAA>AA>A@5??@8;>@8/:8A7)3>?@76<;:,<73, +@853_648_1618 +TTGATCCTATGCGGACGATTCCCGCGCTTCTGCAGTTGAGTTTTTTAAAA ++ +1/(,/3<)+7%'/,%'&1)'09';/5.)%,)1&*111&+&5&0$4%$581 +@853_649_292 +GTAAGGTTGGGAGTTTCGAATATCACAACACCGATCCAAATGCATAGCCG ++ +@<=;>;>><>>@=;<;A>8;;?<>>=>;@;9?>?7>?:=:7=7<:/@676 +@853_669_616 +CAAAAGTGATATACTACAGGAACAGTTGACCACCTGCATGCATGTTCGGC ++ +AA<>=>>@<@>A@@>@@?A>>?<9<@=?=A>9@<A>:?A:>;=8==8>;3 +@853_669_1548 +TCGGGGACCGCCGCGCTCTGGCAGAGAGCTCCAGGGCGGGTGCCGGCAGG ++ +8<977;>:=:;=:9><:9<;795<65>2>;;99=9/<4<8113/78,((& +@853_678_1204 +CTTAAGAGAAAACCTGCTAGCAAACAAAAATAGGGGGGGAACAGAACGAG ++ +737,88957/39486691$92<:77<:1060:9),4&/)),)(').4+,' +@853_678_1908 +GTCCGCTGCTATTAGAACCTCCAGATGGTACACCTGCGTATCGCCTCGAA ++ +=;@7;=754;;::49@@,:9>>?2=.;5087><2;,924968463(;3)< +@853_718_1061 +TGTCGAATATGCATTAAATAAGACTTGGCCGACTTGAAAAGTGTTGGCTT ++ +>A><@?@>@=>>;=<>@===<?=;>@A<=9:>;>=6==8<89:5>8>>;< +@853_719_183 +TAGAGAGCACTCCAGGGGAAGGGCCCAGAATCAAATAACAACTAATAGAA ++ +99387)&%.,./'%682&.53/$)*65-440/#%$1$##.&$##2#,%$, +@853_775_1932 +GTTTACGCGTCCCATTTAGCTTCGCCTATTTTCCCGTGGAGTGTCACCCA ++ +((>3,,(/7&(A,3:5('4&<<?3;/,;8=()7@=:(3556(9:>/1317 +@853_776_924 +GTGGGGTTAAATAGTAGAAGCGCGGACAGGTCCACGTGGAGCGCGAAGAA ++ +88;9855?888?<.;=:54875'67+1#9661#474.5374:2*%88 +@853_815_1179 +GCGGACTAGAGACGTCAACTAGGAGTAGCCGAGTTCAAAAGGGCAAAGGA ++ +<'#37,/*;1;7,;45-738,(/3,+.%21:/&93('(+7#*(,8(*(&/ +@853_816_193 +GGGAGTTTAAGGCAACGTATTGGTCGCCTTATGGTAATGGTACGTATAAT ++ +?=<;=<7>:@=:<>9<;;;>>;8;8<:6>;9>85;=5:<899,7;3174> +@853_827_2017 +CGCTAACGTTTAAGAGGATCCTCGAACTGTGTGCGCGTGCGATTCGAAAT ++ +<?8::>;8;=:?8<=4997;8;8::;<;::<0845;5397<8<;9<=6++ +@853_828_1138 +GCACTATCGTGTGGCCCGATGTCCGGTCCTCCTCTCGGTTTTGGACCTGT ++ +&+&&)')$#,&,#&&')&%&'/&$$'#####&##%$$###&&##&$$### +@853_843_799 +CTACACCTGCGTATCGCCTCGAAAATGCTGTCACCTTAAGCACGTTTAGG ++ +@>>=A:AA=A9A>@4:=>:8:2?:@23;>;;9=1<=;=933'58>;9>:6 +@853_843_1357 +GTTTGCTAGAGTCGTATGTAGTCGTCGTTTCACGTGACCGGTCTACACCC ++ +>:AA8=?:??:?@>@?><>8<;<:>31=>:8(=8<74=,9;?5;724>48 +@853_844_231 +GGGGGACAGGTGGAACTGGTAGACGGTACAAGGGAGAGCGCAGGGGATCA ++ +4289*5)*(/(/+;=$/806&&*76&,.19&4754&2/9/92>3;)11:, +@853_844_634 +TCGAAAGCTCAACATCATCCGGCAGGGCGTAAAACTGGTCGCCCATTGAA ++ +>A;887A=2@9>;.;<67,;?::2:<;9#?<97/7<944:;):&*>90,6 +@853_877_1974 +GCGTCCGCAAGGCGCGGAGCCTGAGAAAATTAGCCCGCGAGAATGACTAT ++ +76187559,719324834789;;285501;<<65:<<:9;;99=<830+: +@853_878_1093 +CGACTTTGTGCCATATGAACAATCTGCAGGTGTCCACAGTGCAGGCCGGA ++ +15<8=89=977)&;9</2=;9,&<=:/)<9,&$3<5*&.79&/<93))78 +@853_887_1933 +TTCACACCCTCTGTCCCCACATCGCAAGTGTCGTCGGACGGCTTGGCGCC ++ +<4?>>@7<<<>:<9;==A?><<=<@?;=9:<8>:=<;=:4=#3))&,%)) +@853_888_1016 +TGAAGACCGGGGGTCCTATGATCAACCCAACCATGAATTGTCACAGACCG ++ +&.+/)(-#'('&5#405$2220&,/03$0+)9$(#)4%%&&-,#&#),'# +@853_943_830 +AACCTACTATGCTCATGCTGGAGAAGAAAAACACCGGTGCCATCAAACCA ++ +(>,5+''#1):,#>#10#%2:%$3&(4#.#..#*39(#':6,$'%))##4 +@853_944_156 +GAACAAGGTCCCCATACTAGCTTCCAGCGAAGTTAATGGGGACCAGCCGT ++ +=;=?8;<;:><===8@<:>8>:<?;?95:??=;:??>4;<:;769:=;25 +@853_946_129 +GGCGCAAGGTCTCGTGCTGAGCCCGCGCTTGCCGTTACGCTGCGTGGCGT ++ +8:<;:,'$,7,./7=,&,<:0$.88(/294'$%::4.%8).)(4,%$(&' +@853_946_1345 +TGGACCCGAATCCAAGCAGCCTGCGAACAAGGTAGGCGCCTGGTTAGCCA ++ +?A<:<<A:=<:@6<><@:=>1@=<==<4:>:=<:>985::685;:2689; +@853_967_1892 +TCGGGCAGATGGCGTCAATATCCTAATCCCGCGGAGCGGGCAGTACGGAT ++ +:>;<<<@==;<<<>;2-#8>87'9><*%=@271=A6//=;)7,;=1).:5 +@853_968_485 +GAATGGAGGCGTGCATTTGAAAACGAGGCCAGGAAACTTCAGTACAGGAA ++ +=<:@<;:>@AA;>A9?8===<=>9<4;=7:2==9;94?@>.,;&;,=<&0 +@853_968_835 +ACTTTAAGTGCCCACAACGTGATTCGGTGGGGCGGTCTACATATTTGCTA ++ +?>@,@<491;:6>3=@<919==@:9>:>4<=:=,=<<9,9965#89.,7: +@853_968_1657 +CTGAGTTCATTTATATCAATAACCGGTCCGCCGCAATCGATCGCCTAGGG ++ +@=@=<?><:>?>8<<5>9<=3>;>=:==A?<A2?<:=<6<6:1@98<56= +@853_985_616 +TGTTGTGATACCATACCTTACCACCCTAAGTGACGCGATATCAACCCACC ++ +=@?A8>>@=>4@@@868@>;:=865;?=<;3=6&1#)#,&,&1#$$()$) +@853_985_1608 +CCTCGAGTAAGGAAGAGAGAAGGGTACGATTATAATCCTCCCAAAACGAG ++ +@798;<9::<9;<:=?9>8;=9:97?68?=;1<:58:3/97%2)%-)#&# +@853_991_1890 +AGGGGGGCAAGTTCAGGTTAATATATAAGTTTAGCCCAAAAATTACCTTC ++ +>,>)&,(->>.32(<@>1&=)/:/)>/&+((>,;)3;&1>=;,%63=7:9 +@853_992_1006 +CTGAATCAATGAGCCCACCACCACCCAAATGCTACCTACAGCAGACAGAG ++ +###(#$#$0###1(###+,'##*##%#%##&##0####$&'#*%*'%#+# +@853_992_1044 +ACAGAGGCCCACCTGCTCACTCGGACAGCCGCCCACGATGAGCACTGCTC ++ +:70.7143#46<257:>/,488938=96958:/75;29)715689/8(&+ +@853_993_143 +CGGGGCTCCAAGCTCCCCATCGAGAGACTGGGGTCCGTACACCAGACTCG ++ +;759<65;<>97<::==@/8;6;6<:;85==1::;;:97<,9=937:79: +@853_996_488 +GCGTACCTGAACTTGGCCATTAAGAGCAGAGCCACCAGTGTCGCGGGGGC ++ +&-'*/*/8)$2(,.22&10&,))0/+,$38'(531,)2)'((%'6'(-1. +@853_996_1656 +TGAACCAATAGTGTCCCGAACACATTGACAGCTCCCAGAGATACTTTCGA ++ +?=:@@>::<;<<?<@<>>;@A7>@<;3<=9<=8:=@99>::.>7<;8<9= +@853_997_740 +GTTATCGGGGGTTTTCGCAACATAGCTTTGGTAAGCATTTCTGCACCCCT ++ +(=('(,(,+<=3?<;::97<;::9<;8:4;<;9::=38:;?=;1<99087 +@853_1026_2018 +GGAGCTATTGCTCAGAGGCCATGTGGTGTCCGTTGGCGTTTGTGCTGGTG ++ +9<#64>;#659;#%61;'11&<+7#9=-3(3:/3342&)361&&(34#%, +@853_1027_1303 +AAATAACTTCAAATGAAATCCACAGTATCCCAAGAGAATCTCGTATTAAC ++ +@><<<9A>>9=A:=?:>;<</;=53::=7;6=9783;3=35:5;):83/) +@853_1055_941 +TCTTGAGGTTGCGTAATTCACGGTGAAATAAGGAATAGTATCGTATCGAA ++ +5&1)>3175@6//;@:3/)=5&$#&&&&&&&%&$'&&%&)&&$&&&&/&) +@853_1056_37 +CAGAAGATCTACTCGAAGGGGTTTGTTTACAGCATAAATAAGTTTGGTTG ++ +:;<75:;?:A9<9585::-9<<=978=9632125145)559:&59-,%&# +@853_1075_559 +TGAGCGCCACAGAGGGGAGTGAAACCTCGCTTCTGTATATTAGGGTAGGG ++ +#&5*&&(1&%&)2$,=(5+;9(0$2:&)%%$)1#:(#)2*,(',)#(,,# +@853_1076_58 +TCACATTGTTATAGAACAGTCAACCAGCACTGTATAAGCGGATCTCCGTG ++ +=>9:9:>;%;1=9(9:9;5;5<;8;<9937:7:.869=3817<*6177.. +@853_1091_1124 +GGAAAGTCAAAGGAGAGAATCGGCCCTGGAGGTGGCGTAAGGCGGTGTCC ++ +=?>@A??>@<<>9;9@>5;<A;??>A?:<>?;5:9;674;<518:5$=09 +@853_1092_230 +TGCCCCGAATCCAAAACCCCATGCGGTCAGACCCATTCGGTGTCGAACCT ++ +>;>9<<>::=9=8999=7>>:8<<6::6997548=<99-9;156579;4- +@853_1094_215 +GCCTTTCTCCCTCTCCTCTGGTTTCGCCTTGGAACAAGCGAAGAACAGGC ++ +4)&/-,1&$77/,.114('(1+)%'*0#,3$$#,#'&(#$$)#,$%3,#+ +@853_1094_1720 +GTTTCTACCCGCACAGTTCCTGCACCTCGTAATTATATTTGTCGGGCATT ++ +78::=<:364<36:9<<:<7=25474<3918497):51913355.=-875 +@853_1138_1582 +GCGTTCCCACTGATTCCAACAACACCAACGCTATGACCCATTGCTCCTGA ++ +?=@@@?=<9<@>;?@=?:<><;7<=@=7==8=9=@/><6>99:5?;8<68 +@853_1139_914 +GAACTAAAGCCAACGCGGCAAACCTTGTGCAGCCACCGCAAAACCACACC ++ +)4#%&+2%$,/$##*000$&.2(,'',,#'&#%%)%%#+,'-&$,$*&)* +@853_1144_824 +ACCGCAACATGCTGAATATGACCTAGCAAACTACGAACAATCTGAACCAC ++ +'8'..1/#3)()&$%'/(&&#((('$1(.#+))',$)%(#(+),,,#$.) +@853_1145_305 +GGAGATCGGGGAGAATTTTATAACGTAACATAGAAAACAACCAGATTATG ++ +A>=>A:A<=?<A<A@=<=9?<A@<<<>>=<9?:>=:>7=:>:?8?79;55 +@853_1148_420 +CTGCGCTAGGTGACATGCACGGACATATAGGTCGCCTGGCCCGAGGGTCA ++ +?>>@=@A<=?@?:?>@A==@>@;<>@3<>><>;9?==;8=:,:1<;5:<= +@853_1148_1437 +TAGCGGGGCGTAAGAAAGTAGAGTTGCTGGAAGATACGGGAAAAGAAGAG ++ +59)&&;')&&4,1)&/;&(-)1&/(6/,0,1<<,:<5(748':;9==/7< +@853_1149_239 +TCCACTCGGCATCTCTTGCGACCGCTTGAGGGGTCTAGAAAAGCCCTGGG ++ +$$+,#2#',+*%0'',#$*4(8#'0$5&#+0/4+*0+5%&(2)#&3/('+ +@853_1149_1929 +CCTGCGCACCAACCCGACTTGACCAAAGATAACAAAAGTGGAGCGAAAGA ++ +<=9>:;9;@A?9;AA::@<8><>>=<<9;2>=98>;>338)8832;>:15 +@853_1231_1371 +CGCAACGTTCGTTACCCCTGTGTTTATACCTGATTTGAATTTAATCGAGG ++ +#:2+%%-,#,-/''''#&**+.#%&,*)#*#1$$&+%$%'%&3$'/$'(/ +@853_1231_1635 +CTTTTATTAATTCAGTCAAGATTTTGCATGAAGGACCAGATTGACATGCG ++ +<>=;<;?;9:9@56<=;7699<47:76,:89:51;860456<'511:)73 +@853_1232_516 +TGATAGCAGGGGAACTGTAGCAATTAGGTGCATAATGCTATTCTCTAATA ++ +=@:<=@>49:;>6:=:>;:;6A9:::><;:4=7699=87:7=869&5=&& +@853_1232_940 +GTTTTCCTGTGCCCGAACTCTTGGGGATTATTCGCCCCGAACGGTTCGTA ++ +//&)3=65://7&/,1@15,)),33=1,<),,3(3?))//,),)6,39)' +@853_1236_169 +GCCTCCAGCTTATATACTCGAGGAGGGATATATTGAACATAGGCTGGTTG ++ +8>9<:6<,.&99864<;>2);=52,:<59/<67<*;<:&+9:6&2<<<:) +@853_1237_10 +TAGCATGCAGACGAGACGCTCCATTTACGGTCGAGAAGTTTAGGTAAGTT ++ +6/<779>86=-4886:>:37==:1;729=2</===6:;,6/;66)((&14 +@853_1242_1158 +GCCTTTCGAAGAGGGCCAGCGTCTACCAGACTAGCTTCCCTAGGAACAGC ++ +=@<=;@@<>==A>>@>=>@=A:>@>???=&;)19(,,&+%+&(&3'3&,& +@853_1243_871 +TCTGAGACGGCAAGAGGTGAATCACAGATGGGCGTAAACCATTAACTTGC ++ +1&?()&,1>>,(=&:88>/>7=1:77=118:75/988:57283/&))'** +@853_1265_969 +AGACTCGGACGGCCGAGGTTACCCCCTTGTTCCCCGGGCGAGTCTACCCC ++ +&82,4,54'),%&)'0('.9.$9',;1(#%88)*#8&(,%19,#,871*# +@853_1266_828 +GATGGAGGTGACCCTAGTGCAGTCTGAACCAATAGTGTCCCGAACACATT ++ +:@@@A38:=95@A=>6:A=?:>=5=;>=;?6>;<=3;>8:;:;:>6=88; +@853_1267_170 +GGAGTGGAGGTGGTCGCCCACCAAAAGGGCCAATTCCGTCGCCATCGCCT ++ +&%%#+,4,##,,8.,%/#'*#72&-,.#*2123-&,4$2#,2(.(,,',# +@853_1277_1774 +TCCCTTGACAACACGAATATAGCCAATTCTGCACTATCCTAAACATCACC ++ +AA?=??>;<>>@;>A@>:?<,3%&1,,(89'92+4&0)-5+&1,/15%/, +@853_1278_1160 +GTAAATCCGACCCCTAAAGAGCCAAGAACCCTAACCAAGGGTCAAAAGAA ++ +;AA==A?:A>?A<?;AA=;79?8><7@<:::8<=97=@9<953=A<8,>6 +@853_1280_287 +GATCGTTCGCGAGCATCTGGCTTTCATGTATCTGAGGCAGCGCAGAGTGC ++ +>?A??>A>@A?>@><>?><@>@?<@=@8@;@:>;<>/=6<8193@86,/) +@853_1280_1640 +GTTTCACCCCCGTCGATACATACTAAGACCTAACGTGCCCGAACAAAACG ++ +8>*2#8+#%#3/##&=:#$.=2#+1<6&(%@1#($>)#'#8(&$+=&&$' +@853_1280_1971 +ATTTCCAAAGGTTCCTTGAGGAGAAGTGTAAACATTCTCAAGTCCACCAA ++ +))(,8.)1)+/&',)*76&85:4'5$$'#2/&(/#.%#&4.'***-+'37 +@853_1281_1171 +TGGGACACGGCAGTCCATACAGTAATAGAGTGCGACGGATACGTTGCTTC ++ +:@<;?<8858@:5>>;?=45;;=:47:4<7>812<985811.27:,091, +@853_1289_1050 +GCTACATGAGTTCATTTATATCAATAACCGGTCCGCCGCAATCAGTTAAA ++ +=75>>;:8787:=6?:;47<:576:9:;3;6=5:<;:'47263+($&&*% +@853_1290_58 +AGACACAGAAGAAAGACATCATCGACAGGTCCATCGTCGTATGCCAGAGC ++ +:846:=:>;;>:9:=8=<=@:;;=;,:9?@;9;><3?=6<1=6=98:/:; +@853_1297_514 +CTAAGTGTGTAACAACCACCCAACACGGCACGTCAAGATGCGCCGATACG ++ +8@8;9>795A<8=9:A?7;@;??;5:><886<;:=6:9:8.=@=:4:9== +@853_1297_1934 +TAGGGCTCACGGACTCCATCGCTACATCCCTCGGGGTGAAAGAAAACAAA ++ +4*%#*,9)-*1751,197()*3-,#94&(-),$##.(#1/7%+#,0&,'0 +@853_1311_394 +GGAATTGCCGTCGCGCGCTAGTTGGTTGGGCGTGCATGTTTTGGGTGGGT ++ +@=<><<?@?A<>?A>0(6)</.;<>:2<><07:<5(0;(4&&0;&.+1%/ +@853_1312_213 +GATTCGGACAGAGGGCGAGGCTAGAAGGGCGGAGGGGAGCGGAGGCGAGG ++ +?>:<?=?@=@=>;<<<?<=>?9?=:@<;<6<><61:4,1(2.)2&&,+2& +@853_1321_1372 +TGGACTTCAGTGGCAAGGGCGTCTAAAAATTAAAAGCTACCGTCAAACGC ++ +@A,>@(5);A&/6>>;??;7>9?19619>1=/<89<3;81>/=3>7/?/9 +@853_1322_846 +AAGAGAACCCTATGACACCTAAAGTAAACTTCAATAATGTTGTGATTAAT ++ +?==:>A@8A8<A?>;:>>7<7<865:>:8=:<:-85:;:<85;</755;< +@853_1359_649 +GACACCCGCTCGAATCCATACACGACATAAGGGGCCTCCTGTGGAAAGCA ++ +7>=41=&7/-)&+,8)/:):7,:<7)/0<:&&;(4(&(86'953.3>'./ +@853_1359_2004 +GTTGAATGGAGCCTAGCCACGCTCAATGCAAACAATCGTTCCCACTGGTT ++ +<=<<=<<>A?><<=<;=?;;>=?>>9==@<>;>;<7<;>8;<83495&<5 +@853_1360_1130 +CAGCTCCATAGCCAATCTATTGCTCACGCAGGTCCGCGCCTACGACGTAT ++ +A@AA><:@8>@=AA@>8@A<?<@?@;=<A;A9=?A;<?>:>1>68<6?<; +@853_1361_389 +GTTCACAATCTCTCGAACACCCGCATTCCCCCGGTCTCAATGCGTATGCG ++ +=AA>:<8=@@>;>9?=<<487?:=>>A=<?;>;5<8>8/::8;/A/>949 +@853_1366_1495 +CTTGAAACGGTACCAAAACCAAAGCGCAACCCTGTCCCGTAAATTTATAT ++ +AA;>9>>:<<::?8;>7:>597<>/@6=:8>9=A/:;>:;/9==92/819 +@853_1367_802 +GTAGCTTGACTGGGACCGAAAGTAACACTGGTAGCACCGTTGTGCACACC ++ +;:?>=>>=?>><;=9?@@=;>?6<<?@7=<?;;:>?99;<?(4<=;:;/< +@853_1382_1227 +CTTGTCCTCTATCATACCAATCTAACTCGACCTTTAGTCTCCTCTCCTCT ++ +<;:99:98::8:#5:;:(7:6<#8<6:%0<89,5944,8:9:4/020*), +@853_1383_1269 +CTATTGACCAACACAGTTCAAGCCAATTGAAATTAGACTCCCCAGGCGTT ++ +/))3(<(152,3),<8:2)37;.6/&7$)1/,$0'%4$3&74).0&0%13 +@853_1395_1324 +TAAGGAACCGCTCAACACTTATGGACTCGATCGGCCGCCGTGGTTGAGCC ++ +4*,19./*)96*83;4,/1,)'27)2082,,'*6(&)&*%(*3422-+1+ +@853_1396_1014 +TACAAAATGCGTCTGCCGAGGTCGTGGCGGCATGGCGCGTGGGGACCTGA ++ +;A5:;:>5;AA>6:><8:<A=<6>:?:9<=<27<<=3<<9=><;><,:<9 +@853_1412_1664 +GATCTGGACAGGAATTGAACACAACCCGAGGTCTAATGATTCGTCGTATA ++ +545)567,5,/*$$,4/$',+)%*,31#)&-1$.'13$&,1&0).1&&&( +@853_1413_877 +AGGTCAGTTTCCAAGGTGGGGGTTGGCATTACGTACCATTCGATTAGATT ++ +?A?<<;A><?;A=<;;>856/>#%###&###%####&&###$$$&#%#$$ +@853_1437_116 +CCCAAACCAGGCTCGTCCCCTTTAAGATAGTCTCGCCCCCCCTCAACTTG ++ +6>>9;<@7=::=:>=544=54#'8&5-2)#(*)4,&%+#',2-&+&0-*2 +@853_1437_1533 +GGCGCATACCTCGCACGCATTCGTAAAGGATTGAGTGAGGCTGCATTGGT ++ +@A<:>>>;;<>?=<:>::>A?;=@<;:>>9>?<3:=:8>=39<1<=9?6? +@853_1486_1272 +GCTATGTCCATATCGTGAATGCTTTCTTGCGTCGGGAGGCTTTTCATAGT ++ +7(7<<98656955)7:67/98%3(9/#,151#169=861<99%)),-%22 +@853_1487_496 +GTCGCACCCCTCCTAAACCCCAGATCAAAAACTGCACCCGCGACCCACTC ++ +6969=651<=::86774;7:<9=/69>0366/8,,8=:</6&31(3,/&) +@853_1488_605 +TCGCCGCCAAACGATGCACTAATTTGCTTACCGGCCAGGCACGGATCGAA ++ +0)&)&1)/1(6)&(+),1=/*&&(&41,',)&1/(/,9/)1//<)&:15, +@853_1489_374 +TAGTATGAGGACAATGAGTACCGATAGTTAGAGTGTACTTCCCGTCCCCT ++ +::;7.;98<;<;:<:<4;35;>95<6==<8/<<=8/==>:5=@/:;<=7< +@853_1493_452 +GAAAGGACCAAACCAGGAGCATCCACCCATGGCCGCTAAACTAGGAGGAG ++ +$*)&'#,,,##(*#'%#%##(#))###%$$$##%###$#)###'#%%(%# +@853_1493_1908 +AACATGTGCAAACCCTGCACCGGCAACGGGAGTGAGGACGCGAAAGGGAT ++ +@<=<====A@;><>?<==>AA=:?===:99;=:=:<<6:6:;96;<;797 +@853_1498_1797 +TGAAGGTCGCATGGCGCGGATTGCACAGCAGATCAACTGTTTCAAAAACA ++ +3=#&&04&',.8#*&-:&.*./$'#);%.$21'0&&/&###4$&%%0$#$ +@853_1499_1261 +GTGACACCTGTGGACGTCTAACAAGTATACCGTGTTTCAGCGGGCAGGTT ++ +>8=36</9587191791<7=<;38@6/51=5<31?9>(:</9:9;5<)7= +@853_1509_820 +ACAAGAGACTACGAGGACACACTCCGGCCCTAAATCGCGAAAAACGGCCC ++ +',.1438/1)&1*3.18,72875),/*&://.4&),+/#+3%5*)56((& +@853_1510_448 +TGAGATACTTTCGATCAGACCATCTGCGACCGGGAGAAGCTTTCCAACAA ++ +8;<5=6;7547@2;69?5:88>2556:4:88@42:;;72,8:,477<553 +@853_1511_561 +GCAAACCGTTCTGATGTAAACAACGTCAATTTGGGCCTTTACAAAGCGTT ++ +?A===@A?><A8A>:>9;;=@828;'#+99:#'9;;4#>6-1/89,-&45 +@853_1511_1886 +GACGTCGTCGTCGTCGTCGTTAACCCTAAGGTTCGCGGGACCCCTCAACA ++ +99;<=:>?<;=8;>=;8=<==9:8::==:9,8?:;)0<6.13;+:*5/:) +@853_1530_202 +GGGGACTGAAGAGCGGCCATTAAGGGAGAATTGAGGAGAAGAGATGAGAA ++ +;<;99=:99>6>8:8<?:898A=2<7@88>)6#/+,&)(#,'-%#+-*%( +@853_1530_1652 +GAGCTGGTACGAGTACGCACGTATGAACTTAATGTGCCATACGTAAATAA ++ +9:>;:>;<8@>8:;:9=<<;=<::>=>7:;;;;9;<=::85>;966=5/, +@853_1569_1617 +TAATTGTATATAAATGCTGCATGCCGGGAAATTGTGCAGCTACGTGGAAG ++ +<A@=>?><<>=@@?=@?;=<=<9A<==;AA>;57:<?<;75>67695@:6 +@853_1570_1472 +CGACGCACGTCCGCAGGTACCAGGAACGTCATCCGTAACCGCGGGCACGC ++ +<=<>==;=:@>@<@==AA?A@>A?@<@?=A9>@?;>=9?<9>A>><3;=7 +@853_1585_323 +CAAGGGACTATAACTGAGGGGTGTGGAGCGGTTGGTTGGCCAGCGCATTA ++ +<;:>?<0<;;=;9781&(,95'+$-+2#,#'',1',$,$1/5+#2)6%&( +@853_1585_2023 +AGGGGGATGCAGGCAAGACAAACGGCACGGGCGTGGGGAGAGGTCCCAAG ++ +?>@A>=44@@8<5A<7>:=?577<?867=>4588>:;88<59;<=:;)9= +@853_1603_500 +GACCTATTCTGAGTCACCAAACGTTTCCCCTGGACCAAAGTCGGCCTGTT ++ +:<:78=:8<8:>2<59<8<<44593:9,&(7:#405:./(66212360/% +@853_1603_1995 +CTGGTACCGGTATGAGCCTAGGATAGAGCGGCAACTCTTATACTGCCGGT ++ +9=:8;>>=<==<<>=AA@><A><<=?>?=<<??<<;?;;?<86=<9?=3;
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bwa_wrapper_out1.sam Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,30 @@ +seq1 16 phiX174 322 25 36M * 0 0 GATATTTTAAAGGAGCGTGGATTACTATCTGAGTCC B&&I13A$G$*%$IIIIIII9(.+5$IIIIIII#II XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2C8A24 +seq10 0 phiX174 4149 37 17M1D19M * 0 0 ATTCTTTCTTTTCGTATCAGGGCGTTGAGTTCGATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:5G11^G19 +seq11 0 phiX174 4072 37 18M1D18M * 0 0 GCATTTCTACTCCTTCTCATCCCCAATGCTTGGCTT II#IIIIIII$5+.(9IIIIIII$%*$G$A31I&&B XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:12T5^A18 +seq12 4 * 0 0 * * 0 0 CGCGCTTCGATAAAAATGGGATTGGCGTTTCCAACC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq13 4 * 0 0 * * 0 0 ATTTCTACTCTTTCTCATCCCCAATCCTTGCCTTCC IIIIIIIIIIIIIIIIIIIIIAAIIIIIIIIIIIII +seq14 0 phiX174 3998 37 21M1D15M * 0 0 CCCTTTTGAATGTCACGCTGATATTTTGACTTTGAG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:5C15^T15 +seq15 4 * 0 0 * * 0 0 CCAACTTACCAAGGTGGGTTACGAAACGCGACGCCG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq16 4 * 0 0 * * 0 0 TCAGGGTATTAAAAGAGATTATTTTTCTCCAGCCAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq17 0 phiX174 3034 37 19M1D17M * 0 0 GTGATGTGCTTGCTACCGAAACAATACTTTAGGCAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:19^T9G7 +seq18 4 * 0 0 * * 0 0 TCAATCCCCCATGCTTGGCCGTTCCATAAGCAGATG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq19 4 * 0 0 * * 0 0 TTCCTGCGCTTAATGCTTGAGCGTCCTGGTGCTGAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq2 0 phiX174 141 37 36M * 0 0 ATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +seq20 0 phiX174 1082 37 36M * 0 0 CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +seq21 0 phiX174 1344 37 15M1D21M * 0 0 CTGATACCAATAAAACCCTAAGCATTTGGTTCAGGG II#IIIIIII$5+.(9IIIIIII$%*$G$A31I&&B XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:15^T13T7 +seq22 4 * 0 0 * * 0 0 AATCAAACTTACCAAGGGGTTACGACGCGACGCCGT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq23 4 * 0 0 * * 0 0 TGTGCTTCCCCAACTTGATTTAATAACCCTATAGAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq24 0 phiX174 4084 37 17M1I18M * 0 0 TTTCTCAATCCCCAATGCCTTGGCTTCCCTAAGCAG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:27A7 +seq25 0 phiX174 520 37 16M1I19M * 0 0 TTGCTACTGACCGCTCTTCGTGCTCGTTGCTGCGTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:26C8 +seq26 0 phiX174 1976 37 36M * 0 0 CCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +seq27 0 phiX174 2598 37 20M1I15M * 0 0 CGCTAATCAAGTTGTTTCTGTTTGGTGCTGATATTG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:9G25 +seq28 4 * 0 0 * * 0 0 AAAGAGATTATTTGTCGGTCCAGCCACTAAAGTGAG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq29 4 * 0 0 * * 0 0 CAAATTAATGCGCGCTTCGATAATGATTGGGGTATC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq3 0 phiX174 505 37 36M * 0 0 GTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +seq30 0 phiX174 4091 37 18M1I17M * 0 0 ATCCCCTATGCTTGGCTTACCATAAGCAGATGGATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:6A28 +seq4 4 * 0 0 * * 0 0 AGCCGCTCGTCTTTTATGTAGGTGGTCAACCATTTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq5 0 phiX174 4985 25 36M * 0 0 CAGTTATATGGCTTTTGGTTTCTATGTGGCTTAATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:13G17A4 +seq6 0 phiX174 925 37 11M1D25M * 0 0 AGGCGCTCGTCTTGGTATGTAGGTGGTCAACAATTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:11^T25 +seq7 0 phiX174 943 37 13M1I22M * 0 0 TGTAGGTGGTCAACCAATTTTAATTGCAGGGGCTTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:35 +seq8 4 * 0 0 * * 0 0 ACACCCGTCCTTTACGTCATGCGCTCTATTCTCTGG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq9 0 phiX174 2596 37 16M1I19M * 0 0 GCCGCTATTCAGGTTGTTTTCTGTTGGTGCTGATAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:7A27
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bwa_wrapper_out2.sam Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,30 @@ +seq1 16 phiX174 322 25 36M * 0 0 GATATTTTAAAGGAGCGTGGATTACTATCTGAGTCC B&&I13A$G$*%$IIIIIII9(.+5$IIIIIII#II XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2C8A24 +seq2 0 phiX174 141 37 36M * 0 0 ATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +seq3 0 phiX174 505 37 36M * 0 0 GTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +seq4 4 * 0 0 * * 0 0 AGCCGCTCGTCTTTTATGTAGGTGGTCAACCATTTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq5 0 phiX174 4985 25 36M * 0 0 CAGTTATATGGCTTTTGGTTTCTATGTGGCTTAATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:13G17A4 +seq6 0 phiX174 925 37 11M1D25M * 0 0 AGGCGCTCGTCTTGGTATGTAGGTGGTCAACAATTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:11^T25 +seq7 0 phiX174 943 37 13M1I22M * 0 0 TGTAGGTGGTCAACCAATTTTAATTGCAGGGGCTTC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:1 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:35 +seq8 4 * 0 0 * * 0 0 ACACCCGTCCTTTACGTCATGCGCTCTATTCTCTGG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq9 0 phiX174 2596 37 16M1I19M * 0 0 GCCGCTATTCAGGTTGTTTTCTGTTGGTGCTGATAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:7A27 +seq10 0 phiX174 4149 37 17M1D19M * 0 0 ATTCTTTCTTTTCGTATCAGGGCGTTGAGTTCGATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:5G11^G19 +seq11 0 phiX174 4072 37 18M1D18M * 0 0 GCATTTCTACTCCTTCTCATCCCCAATGCTTGGCTT II#IIIIIII$5+.(9IIIIIII$%*$G$A31I&&B XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:12T5^A18 +seq12 4 * 0 0 * * 0 0 CGCGCTTCGATAAAAATGGGATTGGCGTTTCCAACC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq13 4 * 0 0 * * 0 0 ATTTCTACTCTTTCTCATCCCCAATCCTTGCCTTCC IIIIIIIIIIIIIIIIIIIIIAAIIIIIIIIIIIII +seq14 0 phiX174 3998 37 21M1D15M * 0 0 CCCTTTTGAATGTCACGCTGATATTTTGACTTTGAG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:5C15^T15 +seq15 4 * 0 0 * * 0 0 CCAACTTACCAAGGTGGGTTACGAAACGCGACGCCG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq16 4 * 0 0 * * 0 0 TCAGGGTATTAAAAGAGATTATTTTTCTCCAGCCAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq17 0 phiX174 3034 37 19M1D17M * 0 0 GTGATGTGCTTGCTACCGAAACAATACTTTAGGCAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:19^T9G7 +seq18 4 * 0 0 * * 0 0 TCAATCCCCCATGCTTGGCCGTTCCATAAGCAGATG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq19 4 * 0 0 * * 0 0 TTCCTGCGCTTAATGCTTGAGCGTCCTGGTGCTGAT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq20 0 phiX174 1082 37 36M * 0 0 CTTATTACCATTTCAACTACTCCGGTTATCGCTGGC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +seq21 0 phiX174 1344 37 15M1D21M * 0 0 CTGATACCAATAAAACCCTAAGCATTTGGTTCAGGG II#IIIIIII$5+.(9IIIIIII$%*$G$A31I&&B XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:15^T13T7 +seq22 4 * 0 0 * * 0 0 AATCAAACTTACCAAGGGGTTACGACGCGACGCCGT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq23 4 * 0 0 * * 0 0 TGTGCTTCCCCAACTTGATTTAATAACCCTATAGAC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq24 0 phiX174 4084 37 17M1I18M * 0 0 TTTCTCAATCCCCAATGCCTTGGCTTCCCTAAGCAG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:27A7 +seq25 0 phiX174 520 37 16M1I19M * 0 0 TTGCTACTGACCGCTCTTCGTGCTCGTTGCTGCGTT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:26C8 +seq26 0 phiX174 1976 37 36M * 0 0 CCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCT IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:36 +seq27 0 phiX174 2598 37 20M1I15M * 0 0 CGCTAATCAAGTTGTTTCTGTTTGGTGCTGATATTG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:9G25 +seq28 4 * 0 0 * * 0 0 AAAGAGATTATTTGTCGGTCCAGCCACTAAAGTGAG IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq29 4 * 0 0 * * 0 0 CAAATTAATGCGCGCTTCGATAATGATTGGGGTATC IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII +seq30 0 phiX174 4091 37 18M1I17M * 0 0 ATCCCCTATGCTTGGCTTACCATAAGCAGATGGATA IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII XT:A:U NM:i:2 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:6A28
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bwa_wrapper_out3.sam Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,63 @@ +@SQ SN:phiX174 LN:5386 +@RG ID:abcdefg LB:lib-mom-A PL:ILLUMINA SM:mom DS:descrip DT:2010-11-01 PI:400 +@PG ID:bwa PN:bwa VN:0.5.9-r16 +seq1 113 phiX174 340 37 18M = 322 -18 GGATTACTATCTGAGTCC II9(.+5$IIIIIII#II RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq1 177 phiX174 322 25 18M = 340 18 GATATTTTAAAGGAGCGT B&&I13A$G$*%$IIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2C8A6 +seq2 65 phiX174 141 37 18M = 159 18 ATTCGACCTATCCTTGCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq2 129 phiX174 159 37 18M = 141 -18 CAGCTCGAGAAGCTCTTA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq3 65 phiX174 505 37 18M = 523 18 GTAACAAAGTTTGGATTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq3 129 phiX174 523 37 18M = 505 -18 CTACTGACCGCTCTCGTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq4 69 phiX174 945 0 * = 945 0 AGCCGCTCGTCTTTTATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg +seq4 137 phiX174 945 23 18M = 945 0 TAGGTGGTCAACCATTTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:12A5 XA:Z:phiX174,+945,17M1S,2; +seq5 65 phiX174 4985 37 18M = 5003 18 CAGTTATATGGCTTTTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13G4 +seq5 129 phiX174 5003 37 18M = 4985 -18 TTTCTATGTGGCTTAATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13A4 +seq6 65 phiX174 925 37 11M1D7M = 944 19 AGGCGCTCGTCTTGGTAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:11^T7 +seq6 129 phiX174 944 37 18M = 925 -19 GTAGGTGGTCAACAATTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq7 65 phiX174 943 25 18M = 960 17 TGTAGGTGGTCAACCAAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A1T1 XA:Z:phiX174,+943,13M1I4M,2; +seq7 129 phiX174 960 37 18M = 943 -17 TTTAATTGCAGGGGCTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq8 69 phiX174 1715 0 * = 1715 0 ACACCCGTCCTTTACGTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg +seq8 137 phiX174 1715 37 18M = 1715 0 ATGCGCTCTATTCTCTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10A7 +seq9 65 phiX174 2596 37 18M = 2613 17 GCCGCTATTCAGGTTGTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:7A10 +seq9 129 phiX174 2613 37 18M = 2596 -17 TTCTGTTGGTGCTGATAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq10 65 phiX174 4149 25 18M = 4168 19 ATTCTTTCTTTTCGTATC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:5G11G0 +seq10 129 phiX174 4168 37 18M = 4149 -19 AGGGCGTTGAGTTCGATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq11 65 phiX174 4072 37 18M = 4091 19 GCATTTCTACTCCTTCTC II#IIIIIII$5+.(9II RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:12T5 +seq11 129 phiX174 4091 37 18M = 4072 -19 ATCCCCAATGCTTGGCTT IIIII$%*$G$A31I&&B RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq12 65 phiX174 5349 37 18M = 5365 16 CGCGCTTCGATAAAAATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq12 129 phiX174 5365 25 18M = 5349 -16 GGATTGGCGTTTCCAACC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T9A7 +seq13 65 phiX174 4074 37 18M = 4093 19 ATTTCTACTCTTTCTCAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17A0 +seq13 129 phiX174 4093 25 18M = 4074 -19 CCCCAATCCTTGCCTTCC IIIAAIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:7G4G5 +seq14 65 phiX174 3998 37 18M = 4016 18 CCCTTTTGAATGTCACGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:5C12 +seq14 129 phiX174 4016 37 3M1D15M = 3998 -18 TGATATTTTGACTTTGAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:3^T15 +seq15 65 phiX174 5198 37 18M = 5216 18 CCAACTTACCAAGGTGGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13C4 +seq15 129 phiX174 5216 37 5M2I11M = 5198 -18 TTACGAAACGCGACGCCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:2 MD:Z:16 +seq16 65 phiX174 2880 37 10M1I7M = 2897 17 TCAGGGTATTAAAAGAGA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:5T11 +seq16 129 phiX174 2897 37 18M = 2880 -17 TTATTTTTCTCCAGCCAC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6G11 +seq17 65 phiX174 3034 37 18M = 3053 19 GTGATGTGCTTGCTACCG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq17 129 phiX174 3053 25 18M = 3034 -19 AAACAATACTTTAGGCAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T9G7 +seq18 73 phiX174 4088 37 18M = 4088 0 TCAATCCCCCATGCTTGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9A8 +seq18 133 phiX174 4088 0 * = 4088 0 CCGTTCCATAAGCAGATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg +seq19 65 phiX174 3304 37 18M = 3324 20 TTCCTGCGCTTAATGCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6A11 +seq19 129 phiX174 3324 37 18M = 3304 -20 GAGCGTCCTGGTGCTGAT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6G11 +seq20 65 phiX174 1082 37 18M = 1100 18 CTTATTACCATTTCAACT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq20 129 phiX174 1100 37 18M = 1082 -18 ACTCCGGTTATCGCTGGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq21 65 phiX174 1344 23 18M = 1363 19 CTGATACCAATAAAACCC II#IIIIIII$5+.(9II RG:Z:abcdefg XT:A:U NM:i:1 SM:i:23 AM:i:23 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:15T2 XA:Z:phiX174,+1344,15M1D3M,2; +seq21 129 phiX174 1363 37 18M = 1344 -19 TAAGCATTTGGTTCAGGG IIIII$%*$G$A31I&&B RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:23 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10T7 +seq22 69 phiX174 5215 0 * = 5215 0 AATCAAACTTACCAAGGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg +seq22 137 phiX174 5215 37 18M = 5215 0 GTTACGACGCGACGCCGT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq23 65 phiX174 4289 37 18M = 4308 19 TGTGCTTCCCCAACTTGA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6C11 +seq23 129 phiX174 4308 25 18M = 4289 -19 TTTAATAACCCTATAGAC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0A8A8 +seq24 65 phiX174 4084 37 18M = 4101 17 TTTCTCAATCCCCAATGC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq24 129 phiX174 4101 37 18M = 4084 -17 CTTGGCTTCCCTAAGCAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10A7 +seq25 65 phiX174 520 37 18M = 537 17 TTGCTACTGACCGCTCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17C0 +seq25 129 phiX174 537 37 18M = 520 -17 CGTGCTCGTTGCTGCGTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9C8 +seq26 65 phiX174 1976 37 18M = 1994 18 CCGCGTGAAATTTCTATG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq26 129 phiX174 1994 37 18M = 1976 -18 AAGGATGTTTTCCGTTCT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq27 65 phiX174 2598 37 18M = 2614 16 CGCTAATCAAGTTGTTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9G8 +seq27 129 phiX174 2614 37 3M1D15M = 2598 -16 TGTTTGGTGCTGATATTG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:1C1^G15 +seq28 65 phiX174 2890 25 18M = 2906 16 AAAGAGATTATTTGTCGG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16T0C0 +seq28 129 phiX174 2906 37 18M = 2890 -16 TCCAGCCACTAAAGTGAG IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10T7 +seq29 73 phiX174 5339 37 18M = 5339 0 CAAATTAATGCGCGCTTC IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6T11 +seq29 133 phiX174 5339 0 * = 5339 0 GATAATGATTGGGGTATC IIIIIIIIIIIIIIIIII RG:Z:abcdefg +seq30 65 phiX174 4091 37 18M = 4108 17 ATCCCCTATGCTTGGCTT IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6A11 +seq30 129 phiX174 4108 37 18M = 4091 -17 ACCATAAGCAGATGGATA IIIIIIIIIIIIIIIIII RG:Z:abcdefg XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:0T17
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bwa_wrapper_out4.sam Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,202 @@ +427_1253_1057_F3 0 chrX_part 14947 37 49M * 0 0 TTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATGTGTCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]VZ XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +427_1299_965_F3 16 chrX_part 13217 25 49M * 0 0 GGGATGCTCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTG ][]]]]Y]]]]Z]]]]]]]]]Z]]]]Y]]]]]]]]Y]]]]]]]]]]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:7C41 +427_12_1018_F3 4 * 0 0 * * 0 0 CTCTTCTCCTCCGGACTAGAGGCCCGGGCAATCAAGGCTGCGTAGACGTA >?<;5@:>>5>7:?<7@><=:>?92<?5>=;@@>?2<?>:?<9<4>56?@ +427_12_390_F3 4 * 0 0 * * 0 0 AAGGGAGTGGTGCTGGTGGGAGGCAATTTGTCGGACCTGGGAAGCGAGTC BBB>=;@@A6<A;=>=A?>??@A58@B>9>>@?70?@<=>>@A9/5?=25 +427_12_550_F3 4 * 0 0 * * 0 0 CGATCTCTGCAACTTCGTGCGCAGGCGATGGGGGGGAAAATGAACGGATA 8A=?<BA@=;?A;?><B?;:5@.<:7?9;6<A62<@;8<==@3:>;=339 +427_12_941_F3 4 * 0 0 * * 0 0 GGGCCAAAGTAAACGCTAATCGAGGAGGACAAAGTAAGGAAGGCGCCTGT B@72=>?A:;<:?>?94B??;3A<?1@<3=<A?8>A6?>=>7A/>=07<@ +427_13_422_F3 4 * 0 0 * * 0 0 AATAACGAAGCGTGTGTGTTAGCGGGAGAGCCGGGCCCCTTCCCGTACGT 9>A2,9@9<8<=;;7=7:>@1<:?37<1>1690>7=<:=A/>53.::<=/ +427_13_494_F3 4 * 0 0 * * 0 0 CGACTACCCCTACCGGTCACCGCTACGGTGAGGCTAAGCTCTTCCAGACG .>>?@;A@?7?@<>39?>=7:==76;=;=65@:::9?8?3=@8=::@2<. +427_13_606_F3 4 * 0 0 * * 0 0 TTTAACGCGATAATCCTTCGAAGGAAAAGAAGTGACTTTCCGTACATACC BB?A?@A??>B@A@<=@A==A>>>>AA@7<?:B=9<@A@A@2@>8><;<= +427_13_861_F3 4 * 0 0 * * 0 0 CGAGGTGCAGGCCTGCTCTGGGGACCCACTGTGACCAGGCGGCCTGCCAC =>>@<@>BB>>58A=@A<BABA:=>@B:==?A9<AA@7::@;??:A?;2> +427_13_961_F3 4 * 0 0 * * 0 0 GACGGGAGACGCTGCGATCGCACCTTAATGGGGGACCGGATGCACAAAAG @BBBBB@BB@B>BBAB@B@AB@ABAABBA?B?B@>@@BA=A?A:<>BBB3 +427_1444_687_F3 16 chrX_part 25682 37 49M * 0 0 TCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAACACCGCATGTT ]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +427_14_1010_F3 4 * 0 0 * * 0 0 GCTGCTGTGGCCGGGCGCACCCAGACAGGTAGAAAGCCGACTCACCACGT @??A><@=ABA@?A?A@A??AB@AA@=<?B;<@?A<94?A=5;:@@2?@9 +427_14_270_F3 4 * 0 0 * * 0 0 GCAGATGCGTGGAGCAACGGTGGTCTGTAGATCGTCAGGATCTGAAACCA A=A@?BB>@9@BAA89>A@:A@@>2@A;383B><;:;>=1=8B:<>=?8= +427_14_376_F3 4 * 0 0 * * 0 0 TCACACGCAGGGCCCCGTACGGAGAATACTGCTCAATGAAAATGGAGGGG B9??@BA@;?BB@@>AA?:?>A><=<A:4=5<?;=<?;?:95=61;<:<2 +427_14_602_F3 4 * 0 0 * * 0 0 GGCCGGTTGGTCGACTAGGCAGGCCGACAATGCCTGAACATACTAGGGCC ,B=7==A:9;AA45,=:9/.2<;58>9806:=>:<8=877?=9198>:2: +427_14_665_F3 4 * 0 0 * * 0 0 CATACGAGGGAGTCTCTAGCATAAAGCTGGGTCCCCTGACATTGACCTGA <A@@>B7<A5@>@>>>;<@68,9@;<-<<:>9?@?>6.A65=;=8569;5 +427_1522_8_F3 0 chrX_part 12254 0 49M * 0 0 ACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCAC )]]]]]]]]]]]]]PU]]][]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:34C14 XA:Z:chrX_part,+26921,49M,3; +427_15_1039_F3 4 * 0 0 * * 0 0 AGAGTCAACTGAAGCTTCCGAGTCGTGAACGGGGGGAGGAGAGGGAAGGC BBB@@@B?A?ABB><A>?9=:=<:@:?>51:AA>?87>?979<>><>>=< +427_15_1070_F3 4 * 0 0 * * 0 0 CTACTCCCTGCATTAGATACTGGAGCTCGGCTAGAGGGATGGCGTTAAAG =>A<@><?BAA?A?>?4??=;>?@>??=:@<6?98==><<:;<8A:7=@5 +427_15_1081_F3 4 * 0 0 * * 0 0 GCTCCTCCACGATTAATCGTTGGGGTGCAATGAGAAAACAGCCAATGGCC @=AAAB@?@>?B@?=BB@?@B=@>;B@3:?BA39?>@7==<<<A?A<1A? +427_15_423_F3 4 * 0 0 * * 0 0 GCTGGAGGAGAAAGGGGGGACCCGCAATCGAGCGTCCGATAATGAAATGG >/B@=<A=??@B>A>B@@>9?@=A6@B@9?5@6A7A@>@A?=?A/@@A?= +427_15_646_F3 4 * 0 0 * * 0 0 CAGTTCGCTTGGTCAATCAATATAGAGAACCTGGGGAGTAGTGTCCGGAG ?@=?>=A?@??B876:@65.B<914;;<06=?914:67997;5<:/7771 +427_15_872_F3 4 * 0 0 * * 0 0 CGGGTAGACTTTAGTACCTAGACGAAGGGAGTGACATGACGTCGCGTACA <:??A@B@B==>@>A:6=?;5<::30<==63@;;1?=;A5,=7<,4;6@0 +427_16_1107_F3 4 * 0 0 * * 0 0 TGTGTAAGTGAGACACGAGAAGCAAGAACTGATGCCCTGCAGGGTTTAGG <+>B><:;A@B?:>>:A7B5;B@?B>8;:>8=B:B@=;@25A9A=>@1A: +427_16_264_F3 4 * 0 0 * * 0 0 CCCGATCCTAGGCAGAATCGAGAGAGACCACAACCCGCGAAAACCATTGC @<>?@@?AA?@??@>>?;:A>>A=?>=?>?:A>@@@:A8@@@:>/@>A4= +427_16_565_F3 4 * 0 0 * * 0 0 AGCTATGGAATACCAAGACATCCAAGGAACTACTGCCGAAGGTTCCGGAG BB1AABB9@@B>3>=@@,?AB<8A>@@9<=BA8<<>>4A??@:??<?6@< +427_17_1027_F3 4 * 0 0 * * 0 0 CAGTGCAATGGGAGTAAAGCAAATTCGGCAGCCCGTGGCCGAACCGCTTG A@@BAB=>B>BAA?5>=AA8:@B@;=@?@9:>BB::?@A54=B?<0<B@: +427_17_342_F3 4 * 0 0 * * 0 0 AGCTGGAGCTGCTGCCACGGACAAGGTCGGAGCTGAGGCTGGCTGGACTA BA?A?BB>>ABB@;;AA@@>AA>=ABB1??:B6>?>B72>@B49>?@3<< +427_17_446_F3 4 * 0 0 * * 0 0 TATGCCGTGAGACGGGGGGAAACAGACCCTACCCCGATGTATAAGGCCGG =B?>8>BA?=>B;?;>A;:<=?937;?=2;6:==;9=@3?9;51;9:149 +427_17_46_F3 4 * 0 0 * * 0 0 CCAATGAATGAAACAGGGTACCCGCGAGCGCCTGCTGAGCTGACAGTCTC :.>A:@>@?7A@<=2?;6?;>;99=<:8;95>0:><14;@4:><:,;:8? +427_17_917_F3 4 * 0 0 * * 0 0 AAGACTACGCGTTAGGCCAAGAGAAAGACTCAAGAGACGACCTCTAAGAT @@=???A6=-;A:3<@?866@94:20<11@3;19:=:/:9<<45B@:48B +427_1891_897_F3 16 chrX_part 26846 37 49M * 0 0 GGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATC ]]]]]]]]]]]]]]]QW]]]Z]]]]]]]]]PX]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +427_18_267_F3 4 * 0 0 * * 0 0 CTGGCACCGAACGGAGGAAGAAATTGCGTAGATTACAGTAATCAGAAGAC AB@A;>@A@>AAAB:8B<>>@B@A=@?=@;=A<A3>?;@@?<:>+A?;A. +427_18_481_F3 4 * 0 0 * * 0 0 GGCTCGCCCCAGTATCGACGTCGTATGAGAGATGACGAGGCCCGGGCGAG AB>?;B@A>=AAA@@@A?=6B=><=B=<8>=7A2=<==5;@5>7<=3=>; +427_18_706_F3 4 * 0 0 * * 0 0 CTCTATATGGAAGGTTACTACTCAGTAACCTTAGGGACCAAGAACCGGTT >AAA@B?BAABAAAAA@@@A?B?>=B?@>>B@6??@><@@?:?A;<?=?? +427_18_834_F3 4 * 0 0 * * 0 0 GGGACCCGACCTAGGACGGACAAAGACAGGGACGACAGATATACGATTCA @@@@><?A><@A?@7@A@@6=><?;<;;7@>=?=:<:<;>=6=/:A?B?4 +427_18_846_F3 4 * 0 0 * * 0 0 GGACGCGTCACCAGAAAAACTAGGGGACGGTCCACGACCATGACGGGGAG BABB>BBBB7BBA@@ABBB1<BABA<B<A89BB?21A@@22@@A?>A@=? +427_1927_689_F3 0 chrX_part 26924 0 49M * 0 0 AGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATC ]]ZY]]]Z[]]]ZROQFMVZ]ZYUV]ZXSLTWZUT]]]]]]Z\[ZXW[T XT:A:R CM:i:1 X0:i:3 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:34T14 XA:Z:chrX_part,+14818,49M,2;chrX_part,+12257,49M,2; +427_19_1049_F3 4 * 0 0 * * 0 0 TCCGCTTGGAACATACTAAAGGAGAGTATATAGATGACCAGGAAAAGCTT ?<>@:A?@B>B=>@@?>AA?B>@@@BB35@B>98<>A5/AB><<BB>8<: +427_19_11_F3 4 * 0 0 * * 0 0 CAGCCCACATGCACCCACTGGGAAGGCCACCCATGAGAAACTCCACGATC =1:<4>?><;=?><1?:>?7>=>=:<=<99:><<55;>>,@=>93>/15: +427_19_137_F3 4 * 0 0 * * 0 0 AAGCTGACGCTACCACGGACAACAGCGGTCAAGGCCGTCAGGCGAAGCGG ?78;?@?<>;=AA=;7?9<8;=<:<8><968;<9;:<:;::<53;=7+85 +427_19_296_F3 4 * 0 0 * * 0 0 CCAGAAACCTCAGCAACACACCACCTAGGCCCCCAGGGTCGGAAGATGCA B@BABBB@BBBBAA@<AAAB>@A@?AA@?@>A=?9>?>?@@@?@=?A<@@ +427_19_324_F3 4 * 0 0 * * 0 0 TGGACGATTTAATGGCAGGGAAGTGAGACAAGACTGGGGTCTGCGAAAAA A;=?3A>>:>>:<87:8483>>627=;40596=885:66>3810/843:9 +427_19_533_F3 4 * 0 0 * * 0 0 GAAAGCTCGATCGTTCGACTTTTCTTCGTCTGAGTCAATCAGACTTGGCA BA@@?>@A?>A@@@@?@<=BAB?>BA?<>3B?<;@?AB?7><@@@AA6?- +427_19_899_F3 4 * 0 0 * * 0 0 CATACCGTAGCCCAGGCAAGGAGACGCTCAGTGTAACAAGACGCAGTCGA @??B>=@<A?;@5AA8=6@B<:3A>6=57@9A2?A=;:A?4>,9A7=48@ +427_20_363_F3 4 * 0 0 * * 0 0 GACGTCGAGATACGGTACCCGGGCTATATTTTAGACGACTTAAAACTAGA AAAA>@B>A+BB@A7B@?<==?>=@.@9?=>A=<<1><>>>=@@?74?.@ +427_20_407_F3 4 * 0 0 * * 0 0 ATAACGGACACCTAAGAAGAGGGAGTTAACATCCAGCGTAGGGCGCGTAC BBBB?BBB?ABBBBABB@>BBB?@?AB?@@2B?@;@94B@AB??;/?@>= +427_20_608_F3 4 * 0 0 * * 0 0 ACAGCACGCGGCTGCAGGAGGGAGAGAGGGGCAAGACGGACGGGCCTGTG B@9<AB?35>@>9?=AB7:@@A6<@A=>=A@@=<=?@<;:=<-<@:=0=: +427_20_892_F3 4 * 0 0 * * 0 0 GACACTCCATGGGTTCGCCGTACGTCAATGCCGACTGAAGAAGCCAGAGG A@A@?A@@>@BA?AA@>@>?B@AABB?AB:@A>?AB<BB@A@>@>>9>?= +427_20_982_F3 4 * 0 0 * * 0 0 TCCCGCGCAAACATCCTGATCAAAACCATCTCCCTGACGGTGGGCTTGAT @??>>>?98@@<36:;=:9=?:89<>9;.:7??/734:40;09.8<1834 +427_21_328_F3 4 * 0 0 * * 0 0 TGTGCGTCTAACCCCCCCCAGGGCGACGAGCTGGGAAGGCGTGAACAAGC B@>>@BB;A?BB?A>AA>;8BB>:<@@<7<AB==>?><>9@A:=7A@/<= +427_21_334_F3 4 * 0 0 * * 0 0 AACAGTAAACAGTAAGGGGGAGAAGGGGCTCTGGACGATGAAGAGGGGGG AB>4>?B@84>@>@;@BA<=<A<3@?A;1=6?=8>@=?7;A=<<?<;<69 +427_21_366_F3 4 * 0 0 * * 0 0 CTACCCCCAGCTTTCCCCGTTGCCTGCGGCCCAGCGGTGGGGCCCATGAG >AA?@@@@>?>B=B><B@?A@AA;B?A=7:<B<>A9>B=@<BA?B>@;?7 +427_21_473_F3 4 * 0 0 * * 0 0 GATGCATGGACGAACCACGCTGGGCAGGACGAATTCTACCGGGCTCGAGA BA?<>>B:>8=B@@8=<==;@A>@;<@;=<69/=<7>5<>4?9;91;36> +427_21_537_F3 4 * 0 0 * * 0 0 AAGCAGTCATAGGGAGCTAGGCGTAGAGAGCGGCTGTGCAAGTCCAGACG AB@@@ABA:A?B@B>>AB=A@@;A?@A@?>8?A<A>=><@@4>=@@7:=9 +427_21_563_F3 4 * 0 0 * * 0 0 CGACAATTCTCGATCGTAGCCAGTATAAGAGACACAAATGCGAGGACTTC >@AAAAA@?=>BAA>=A@@??>=A==@@?@<A:@>:A@@=9>@<@+>=@A +427_22_56_F3 4 * 0 0 * * 0 0 GAGGCACCGTCACAAACTAACTACGTCGCTGGTTGCTCGCGATGAAGGGG ?>=>.?A@?9AB>;?7@A<<=B:;<@7=:?6:B:;3?>0@38A3??<8<< +427_22_692_F3 4 * 0 0 * * 0 0 CGCGATACGAAAGGGGAATCGCCGAACCCGTAAACTAGATTAAGGGAAGA :?;<>B>:@>A>>AAA71@=<?3>2=>?7;9<<7;?7<>9?=+=?-?=7; +427_22_787_F3 4 * 0 0 * * 0 0 CGGTGGCAAGTACGCCGGTAGAGAGGGGGGGGGGGCCGGGGGGCTCATCT <@5>:@@<76@A;;;;A7=;<><;8>A;4;>A<965+;<;<>598;6<82 +427_22_927_F3 4 * 0 0 * * 0 0 TCAAACAGAGTAACTTGATTGGTTCCTAAGTGGTACAAGAGGTCGAGGAA @ABB@>?A??BAB@AB=A?B@@BB@A=@A@B<?9=?>=7<?>><9<>>?; +427_23_177_F3 4 * 0 0 * * 0 0 CTGAACGGTGAACCAAGGCTGCGGCACATGCCAGGCCATTTTTGGTTATC >A@AA@@@A>BA>@=?A@>AA<>>=@@:?=>A<=>>>2BAAA4:,A?6A8 +427_23_740_F3 4 * 0 0 * * 0 0 GCAATCATCAGGTTCGGACTGCCACGCAAACTCTGAGAGGATTTTCTAGA B@@AB@<?@AA@A?@?A@?>A;@>@B;?AA=2>?@A/A=A@A@@B<??7> +427_23_874_F3 4 * 0 0 * * 0 0 GGAGAACTCTAAGAAAGAACTTTAAACCAGTCTTGCCCCCCGATCGTGAA <@ABBBAB=AABAAA@@BA<>A@@B?A??=A@B@@@B<BBB<=<@:>?>: +427_23_986_F3 4 * 0 0 * * 0 0 CGGTCTGTTTTGCGGGACACGAGGTCGTGAACTAGACTGCGGGTGCATCG @6=??@<<><>@A@:<=<;==>@;3=>8=;>::?8@?9=99=4:6@<67; +427_23_993_F3 4 * 0 0 * * 0 0 AGACTCCGGGACAATGAGTCCAGCAGAGGGTGATGAAGGAACGAACGGAA @>BAAA?BBB@?B@BA@ABAB?B?A@A?AAB@<AA?>@=AA<ABB@:@AA +427_24_1040_F3 4 * 0 0 * * 0 0 CCATTTTCCCAGTGAGCACCCTTGCTTCCAATCAGGGGACTGGCTCAGAA 45/2<9A@A93A7<5:;@6=<A:7=:B5740@<698=3<:8:8-:5,220 +427_24_476_F3 4 * 0 0 * * 0 0 CAGCAGGTCCAAACGTGGATCCGCGGGCGGAGAAGGCGACACAGGGCAAA =B>:>>A<<76===6=?;3=;<<45<=6,876968:-256;693464<<< +427_24_880_F3 4 * 0 0 * * 0 0 CGTAGGTAGGCCAGGCGAGGTATTCTATCTGGGCGCAATTACCAGGAACA AAA+AB@?;@AA?;?ABA>AB>B:=BAA+@=A>4?>A?=@4?;2>9A=1? +427_24_952_F3 4 * 0 0 * * 0 0 GGTTTTTCCTTGTTCATGTGTAATCCAGTATGGAGGGCCAAAGAGAGTCC @?B>@9?@-16=9<54:-<53=6>:2;.41/<176,>8137;5:.9=905 +427_25_234_F3 4 * 0 0 * * 0 0 TATCAAGCAACGGGTGTATGGGGGAAGAGAAAGGCGATCCCACCAGATCA 0>@</1A7<+8A64::>4<9<@88=9>94<8@:7<9=>;?8:;195:<5> +427_25_60_F3 4 * 0 0 * * 0 0 TGAGGTATGGGAGTCGTAGGCGCACTCGAGGCGCCTGAGGAAACACCCTC A/>>=?==>:>>8?:>=.=>9>84:@:96<7>6<=<93<<5;>:8==.1< +427_25_854_F3 4 * 0 0 * * 0 0 AGCACTCGCGTAGACAATCGACAGCCCTGACCGAGCGAATAAGGGCTGAA AA@BBB?AB=B@@@>=;B;@4?B9?=@B;@6A?9=<:A@A6:73@55>2> +427_26_256_F3 4 * 0 0 * * 0 0 GAGGGCCGGGGGGCGATCGAAGAGTCTCGAGACGAGGCCGTGTCTCGGAA BB=BAA@@BABB?7A2>-@@@>@?AAB=@8@?9><@>:7>@>:7@@45+8 +427_26_331_F3 4 * 0 0 * * 0 0 TCGCTCGCGCTAAGATACAAGGAAGCTCAACTTTTAGCGCGCATAGGCTG =73:><A;=9?<>;/A;;:<=?276:<19;;A<7<<9<3:9:-.<<>.74 +427_26_583_F3 4 * 0 0 * * 0 0 CACGCGTTATGGAGCTCGGCGAGGGGACTAGGAGCAGAGTCTGCTTAGAT AAA@ABBBB?@B@?=B;>AA?=?@A@>7A@AA>>@==@?A=B==BB7:AA +427_26_646_F3 4 * 0 0 * * 0 0 AGAAACTCTGAGCCGGACCAAAATTAGGAGATCAAGAACCCCGGGAGGCC @@AAA?A>??BB@@A?;A@=BB??:AA7=8AB:><=<==@B;:9:A:>?5 +427_26_857_F3 4 * 0 0 * * 0 0 TTAGCCGTCCGCTGTATCAATCCAGTGTAGTCGTCGTAAACGTAACGTAC >A?=>@@<><=<=><@?7<9@><?:@;@8:@@;6<8>>A9=1/A??5:@. +427_27_1002_F3 4 * 0 0 * * 0 0 GATGCCGATAATTACACACCCCCAAGTGCGAAGGCAAAGGATGGCTTCCC >?<>B<A<=?<B;;9@A9>?@A:A=<A5<3=B:;:AA==0A>3<37A>=5 +427_27_160_F3 4 * 0 0 * * 0 0 TTAAACGTATTCTAGTACCTAAAGGAAGCTGGGCTCACAACGTTTAAAAG >>AA@@-@A?A<>A;@647A=<>9=?;:7@8;3>@2:5@<:7@?A99:?4 +427_27_231_F3 4 * 0 0 * * 0 0 GGCGGGCAAGGGCTGGGGATGGAGACGACTACTTTCCAAAGTCGGCATGC ABAA?AB=>>@B>@?@@6;B@A5;@@@=8=>;:<A?@.?;<@;8=>9<5< +427_27_369_F3 4 * 0 0 * * 0 0 CAATGCCCCTGAAATGGACGTACGCCTAACCGGAGCCGGCTGGGCTACGC ;3:7?@=34?A<3/@A?14<A8;4>7=31<98.0:<<54<77659?4.8< +427_27_778_F3 4 * 0 0 * * 0 0 GCAAATGCCGAAGAAACAGAGAGAGGGCACGGCAGGACACCACCTAGACG AA:=6AB=;=>?;=:@>6=;>>:8=@@=;7A@><?A@?=<???;@?===7 +427_27_939_F3 4 * 0 0 * * 0 0 AAGGAGGGACACAAAACCCCGGCTAATCAGAGAGCAAGGGGAGTCGTCGA 2:53=@:<@9:<?@??28>@<5:A<@>;02=6867A=<<@58->;:72/2 +427_28_1127_F3 4 * 0 0 * * 0 0 GTCCGGGACCTCTTACCCAACACAAAGGCCGAGACCCGTTGCAACTGGCG ??BBBB?@BAB@BABA@?BBA>@BBAA=?>BB>?@A=:?@9@BA@78?B- +427_28_593_F3 4 * 0 0 * * 0 0 TGGCAGAATATTACCATCTAGAGAGAAAAGAGGGTTAGACGCAGGCTAGA 4B;?>@@==;A@=;;A?-;?@@:=?BB95><@<4AA<;>:?97<>@?<89 +427_28_739_F3 4 * 0 0 * * 0 0 CAGCTCCCCGCGAAGCTCTCATTACCTCGGGGTGACTACTAAACGTTGAG 6B=@AA<;=3:B?@65@8@>5A:=>@A859<>99>4A</?:;?596A348 +427_28_798_F3 4 * 0 0 * * 0 0 TACGTAAACCACCTCGCCCGCACTCCAAAACCGAGACCTTCCCACATCAG B@@@@???<36?8:::<=?6-;89<;;:4994<.;5>A5:43>+>0+<11 +427_28_923_F3 4 * 0 0 * * 0 0 CAGCCTTGATCCTACGCTGCGCTGCCGCGAGCGTGGACGATGCTCGAGCC ?B=A?B@>A8BB@>>@>B;6>>AA;A8=:2@:::8?8>66A4?<:?4?;; +427_292_217_F3 0 chrX_part 14846 37 49M * 0 0 GTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTT ]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +427_29_521_F3 4 * 0 0 * * 0 0 CTCTGACGTCCCATGAACTTCGCGAAGTCACCCCGGCACAAAACGATTGC >B<@=AA===BB>?<>B:>>@;<6>=?>/;>B?<=3@0;?>><88=;<03 +427_29_911_F3 4 * 0 0 * * 0 0 GTCCGCCAGTCCAGACTGGACAATTCGGACAACGGGCTGAGGCTAGGGAC B?BA@BA@B@?AAB=?@ABB=@BBB@B>A<>@@BA<=?BA>?=@B<B<@= +427_29_95_F3 4 * 0 0 * * 0 0 AGACGAAGTGGTGATGGGTGTAAACGGCCCGGCGTAGAGCACGCTCGAGC ?8?@>A><<:9??5????;;>@@9=<7?8<==>4@-==7;/5>1;4;;24 +427_29_970_F3 4 * 0 0 * * 0 0 GAGCTCGACGCGGGCGAACAAGTGAATGCCTCGAACAGACAGAGCGGCGA A@78BAB:>=BB9;>BA89BAA88AAB-:=@@4<<A@2:>>>.,9>B-78 +427_29_978_F3 4 * 0 0 * * 0 0 ACCCCAAATTTCCGCGCTTACAAACATCTGCGACAAAGATATGGTCCCGG A?@BAB@?B?AA?B?@B@BA>ABB?A?9A@??=7@AB/A?<A?<@@@=@? +427_30_1018_F3 4 * 0 0 * * 0 0 CAGAAAGGCCCCTAAGGCACACACCCGCATGAGGCCAGGCTACCCCAAGC @@@AABB@B?A@;4AAA<;A?A>4AAA98BAA:9A@B=3B;A;:A>A=,B +427_30_1044_F3 4 * 0 0 * * 0 0 CCCTTCGGAGGCGGACCAAGACAGCTAGGGAGGGAGAAAAAAGAAGAAAC ?BA@ABB=;AA><==AB>=@>A@=>=A?=A=A>9A7BABB@A3@A.<76+ +427_30_1053_F3 4 * 0 0 * * 0 0 CGCCGTGCGCTTCTATCGTGGGACGCAAGTTCCGGATGATGACAATACGT <?A=@@ABB>BB@?@;;8A@>@??@>=A<A=9?@?9=9@<.:<BB:9<== +427_30_261_F3 4 * 0 0 * * 0 0 AAGAGCGGCGGCCAAGAGGCTGCTATTGAAGCCTTGCCCGTTCACCACCC A?>??A@@>?@@=@<@<??=A?>@>BA<>>>@7>?<??>>=<=<=>:;?@ +427_30_606_F3 4 * 0 0 * * 0 0 AGTAGGAACCTTACACACGGGAGGCAATCCCTGGCGTGAGGCTCGAGGGA >?@8=@@:<<@A86;A=88>@?8/-<??699A929>>667<9=59>881: +427_30_752_F3 4 * 0 0 * * 0 0 CGGCGGAGGCAGACGCACCATACTGCAACGGAGGAGGGCAAGATGGCGAT @B@=?B?@>=>A.<>>;8;9@@<>;AA:;;??8:3@>:;8<=6=6:0624 +427_30_764_F3 4 * 0 0 * * 0 0 TTGAGACCGAGGGCAGCGCTAGAAAAGCGTGTATTCACGGGGCGAAAGGT BB?A@@=0>3?A:=8?;98??>7=<?@/<9:A3=:=;9=8<<8:?@<9;> +427_30_773_F3 4 * 0 0 * * 0 0 CGTTGCGCAAGAGAAACCGCAGCTACGGCACCGCCGTATACCTAATCCAA <@BBB=BBB@=?@B?=A@@==@@@@=B??===@>>;>A=7A@@8<8<>>? +427_30_959_F3 4 * 0 0 * * 0 0 AGGGAGACATAGCCTGCACTCCCAACCAATTTGCCACGAAATGGTCATAT >=@@?@=?;BA@>9BA=:=BAB=;:AA;9BB?88<==;??=?79;6677@ +427_30_983_F3 4 * 0 0 * * 0 0 CGTCTGACTAGGACTGAGAACCTCACCCTGGGCTCTCTAGAGAGGCTCCG >?@B?BA@A=BAB>@BAAB?B@AA=BB?@?B@A@9A:A<7B<B@>B<@@A +427_31_153_F3 4 * 0 0 * * 0 0 GACAAGGAACTGCCAGGCCGGAGCGGAAGACGTACCATCATCAGCGCGGG ?>=>9AA?@;@A?;9@@:;;>>6<;?@9<<<A@8<><=8@A=>1?9>:9= +427_31_598_F3 4 * 0 0 * * 0 0 GGCAGGGTCTGGCTAGCATCGGTTAAGGATCTGGGGGAAGAGAATCTACG BBA?AB@?/-ABA=9A:1?9BA@@<8@>0<>?=<>@@=?::AA>@::99= +427_71_906_F3 16 chrX_part 28077 25 49M * 0 0 CTTTGAAGCAATTGCGAATGGGAGTTCACTCATGATTTGGCTCTCTGTT []XNU]\]WO\]]]]]\]YX]]]]]]]]]]]]]]]W]]]]]]]]]]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:14T34 +427_794_484_F3 4 * 0 0 * * 0 0 GCTCATACGGACGAGACACCCGTTCCACGATTGAGGCCACCGGGGGGAAT A@BAABBBA=ABBA=@@B?4<BAA4>A@81@B@26>A@+<>=?<;?BB:2 +428_1011_1047_F3 4 * 0 0 * * 0 0 TCGCGCCGCCCTAAAGCCCAGAGTTAAGGGACCCTGAGGGGACGTCCAGC BB?>?BA@<>?B>=?A?>8@AB@A?A@>;=>>??@>A?==@?=6@>7;5> +428_1380_646_F3 16 chrX_part 3496 37 49M * 0 0 ATAAAGAAGGTGGTTTTCAGGTCTATATTCAATGGCTCTGGTGTAATAG ]]]]]]VX][[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +428_1424_131_F3 4 * 0 0 * * 0 0 CTCTATTAGCCCATTGTCAAGGCGACAGACACACAACAATCCGACACCAT 6B7?@BB>:>AB:@BBA>>8B8;:7><<>=9<6<+>8><<?@9>05<46= +428_1495_1538_F3 0 chrX_part 26855 37 49M * 0 0 GGATCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2G46 +428_1562_623_F3 4 * 0 0 * * 0 0 CATGTATTTGACGGATGGTCCAAGGACGATAACCAATAATCCAGGAAAAA ;@A@BABA?AA@A<B?@?==@BA=:?@?><?>?5:==A?4:>?32:=@?< +428_1569_464_F3 0 chrX_part 26911 0 49M * 0 0 GAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCT &)]]]]]]\]]]]]]]]]]]]]]]LS]]YS]]]]Z]]]]X\]]]]]]]] XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:47T1 XA:Z:chrX_part,+12244,49M,3; +428_1573_204_F3 4 * 0 0 * * 0 0 ACAAGTCATGTGACGCAATCACTTAAGGTGCAGGTGGTGAAGCGGAGATG B=;=ABA9:AB@;=AA44>5?;==65=2;978?:;19?/@-1=<==3?:= +428_1632_1017_F3 0 chrX_part 14942 37 49M * 0 0 TTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATG ]]]]]]]]]]]]]]]]]]Z\]]]YU]]]]]]]]RS]]]]]W]]T[TT]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +428_1643_455_F3 4 * 0 0 * * 0 0 TAGTCTAGGATTTCCCACACCACCGGCCAACCGGGGGTACAATGCTCGGC A>>A>AA?;BBBAA>B@@?=AA@@<9>>@@??>A?<=<B@=75<A>;:<@ +428_1684_1168_F3 16 chrX_part 27017 37 49M * 0 0 CTAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATTTGCATTTCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_1691_159_F3 16 chrX_part 14618 37 49M * 0 0 TTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGC ]TO]UY]]]]]]]]]]]]VT]]]]]]]]]]]]]]]]]]]]]]]]]]]+/ XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +428_1816_859_F3 0 chrX_part 14837 37 49M * 0 0 AGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\ XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_1829_1041_F3 4 * 0 0 * * 0 0 AATAGTGTCACATCGCGAAGGAGCCCGGATACAGAAAAACGTCGAATAAG ,??A@9AB>@5AA>A9A?=?:B=?:5A=;>8@;:89A>=92A96<4@>;9 +428_1841_222_F3 16 chrX_part 26855 37 49M * 0 0 GGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATGGCCACACTG ]\Z]]YV]]]]]]]][S[]]]SQ]]]]]]]]\]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:39C9 +428_1971_118_F3 16 chrX_part 27350 25 49M * 0 0 TGGCTTTTGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCC XX]]]]]]][Y]]\]]\]]WX]]]\]]]]\\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:7G41 +428_1978_162_F3 16 chrX_part 28066 25 49M * 0 0 TATTTTATCCTCTTTGAAGCAATTGTGAATGGGAGTTCACTCATGATTT ]]]]]]]]SS]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:8T40 +428_247_467_F3 4 * 0 0 * * 0 0 CTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCGAACCACACCG ABAABAAAB@AAAA?>>?AA:?@A:9=>A@4;?B@<>8B>.8?A>1:<@> +428_385_1306_F3 0 chrX_part 27180 37 49M * 0 0 TTTCTTGTAAATTTGTTTAAGTTTCTTGTAGATTCTGGATATTAGCCCT ]]]]]]]]]]]]]]YW]]]][]]]MN]]]]]]]]]]]]]]]]]][]]\Z XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:23C25 +428_435_1382_F3 0 chrX_part 14761 0 49M * 0 0 ATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]ZJ XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:35C13 XA:Z:chrX_part,+26867,49M,2; +428_589_1697_F3 4 * 0 0 * * 0 0 CGAGTCTAGAAGAACGAAACGCGCCCCAGGCCGAAGTCTAAGGGGGGCCA @1>B6<<;A?@?B></=B@@/>>B???5?:=<=?9:=12><:>>;:<577 +428_615_1095_F3 16 chrX_part 28737 37 49M * 0 0 ATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTC ]]Y]]]WY]]]]]]MX]]]]]]]]S\]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_628_321_F3 0 chrX_part 28192 37 49M * 0 0 CTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGT ]]]]]]]]]]]]]]]]]]U]]Z[Y[]]]W\]QO\]\ZYPPVU]XY]\WU XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_666_413_F3 0 chrX_part 27425 37 49M * 0 0 CTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAGTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]][]]]]]]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:40A8 +428_912_273_F3 4 * 0 0 * * 0 0 TCCACCGCGAAACGGGCCCCGTCCAGAAAGAGAGCCCCGACTCCCCAGGG BAABBBB@@BABA@BB@>??BB@A?@A=@<>@??<ABBA::@A@@@@9>< +429_1074_1497_F3 0 chrX_part 26923 0 49M * 0 0 TAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACAT ]]]]]]]]]]]]VV]]]XZ]]]]]]]]]]]]]YZ]]]]]]]]\[]]][Y XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:35T13 XA:Z:chrX_part,+12256,49M,3; +429_1244_262_F3 16 chrX_part 27844 23 49M * 0 0 TTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCAT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+15141,49M,2; +429_1264_776_F3 16 chrX_part 27356 37 49M * 0 0 TGGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCC %!X\[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]* XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +429_1285_1614_F3 4 * 0 0 * * 0 0 TGTAGTTGCTACCACAGCCTAACAACACACAGACAGCGGAACTGTTACCC A@BB?ABBBBBBBABBBB?AABBA@<BB?A@B>6@=@@;BA@@>@;?B?? +429_1292_826_F3 4 * 0 0 * * 0 0 CGGTGAGGCTCCCGTCAAAGGAATATCACTGCGGGCCGACCGATCACAGT >A@A?AA>?BBB>@@;:?3>A?@??7@@;A=?<<<>=;@??<?9?7<A2A +429_1304_326_F3 0 chrX_part 12249 0 49M * 0 0 GTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTC ]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]] XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:39C9 XA:Z:chrX_part,+26916,49M,3; +429_1398_1503_F3 0 chrX_part 27821 37 49M * 0 0 TCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCAT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y[]]]\]]]]X\]]\U]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +429_1427_1475_F3 16 chrX_part 27983 25 49M * 0 0 TATCCTCTTTTATTTCATTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAG ]]]TOYT\]]]]]]]]]]]]]X]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:16C32 +429_1568_890_F3 0 chrX_part 13190 25 49M * 0 0 ATTCCCTTTGAAAACTGGCACAAGACAGGGATACCCTCTCTCACCACTC ]]]]]]]]]]]QT]]]PT]]]R]]]]MS]]]]]]]]QT]]]\]]]]QU] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:32G16 +429_1819_792_F3 16 chrX_part 3467 37 49M * 0 0 GTACGAAGAAAACAAAGAGCTCGGTTACCATAAAGAAGGTGGTTTTCAG [UMBRWX]UW]]]]]]]]]]]]]TU]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +429_1854_1258_F3 16 chrX_part 27411 25 49M * 0 0 CTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGT ]]]][[]Z]]]]]]]]]]]]]]]]]Z]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:13T35 +429_1876_126_F3 16 chrX_part 27366 37 49M * 0 0 TGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGA W]Z]]]]\]]]]]]]]]]]]]]]]]]]]]]]][]]]]]]]]]]]]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +429_1899_322_F3 0 chrX_part 27853 37 49M * 0 0 TCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTAT ]]]]]]]]]]]]]]\]]][Z]]]]Z\]]]]]]\\VZ]]]]]]SW]]]Z\ XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:48C0 +429_1905_281_F3 16 chrX_part 26882 37 49M * 0 0 TCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTAC ]]]][X]]]]]]]]]]]]]YX]]]X]]]]]]]]]Y]]]]]]]]]]]]]\ XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:29G19 +429_1921_1124_F3 16 chrX_part 26708 0 49M * 0 0 TTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTG ]]]]]]]]\Y]]]]]]]]]]\]]][]]]]]]]]]]]]]]]]]]]]]]]] XT:A:R CM:i:0 X0:i:2 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-14602,49M,1; +429_1925_1090_F3 0 chrX_part 28003 25 49M * 0 0 AGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:45A3 +429_320_1424_F3 4 * 0 0 * * 0 0 ATTGAGCGGGCGAACTGCGAGCACTGATTGCGTGATAGAGGGTAAACAAT BB?9=>B<=><BA<??@=;=:=A5=?@A>==AA48?72:<>>=??@:33= +429_498_1544_F3 0 chrX_part 12236 0 49M * 0 0 GACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T47 XA:Z:chrX_part,+26903,49M,2; +429_517_617_F3 0 chrX_part 27136 37 49M * 0 0 CTGTTCATGTCCTTTGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +429_525_1146_F3 16 chrX_part 14836 37 49M * 0 0 CAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGT TTXVUPQYSVYW]]]TT]]]OT]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +429_566_873_F3 16 chrX_part 28192 37 49M * 0 0 CTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +429_627_1289_F3 4 * 0 0 * * 0 0 TTAGCGCCTACTGAAACTGCAGTGTCACATCGCGAAGGAGCCCGGATACA BBBBBBA?BBBB<BBB@@A@B@?=A@>>@AA??>?>B>:=A>===??<<B +429_641_991_F3 0 chrX_part 27721 37 49M * 0 0 ACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]][ XT:A:U CM:i:2 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:35C0A12 +429_706_923_F3 0 chrX_part 14842 37 49M * 0 0 AAAAGTGTTCCTATTTCTCCACCTCCTCTCCAGCACCTGTTGTTTCCTG LY]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:22A26 +429_820_1223_F3 16 chrX_part 27415 25 49M * 0 0 ATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAA [VUZ]]]]]]]]]]TT]]]]]U]]RZ]]]]]]]]]Y]]]]]]]]]]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9T39 +429_880_338_F3 4 * 0 0 * * 0 0 GATGTGAACCCGGAATTCCAACGTCACTGCGGGGATTCGTTTAACCCAGG A@A?BBAA@@?B>A@@A=?B?A8?;=A=>@@A?>?@A8;AAA=A<?<;>= +429_899_643_F3 4 * 0 0 * * 0 0 CACAAAATTCACAAATGACGGTACTCAATAGCGGAATATGACTGGACGAT ?AB@6>?AB<=@AA@>@<A>=B@=>3@?@><A@@=>>?A=>;B8=@@6<< +430_1055_244_F3 4 * 0 0 * * 0 0 CGATGTTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCGAACCA ?BBBBBBBBBBBBBABB@BB@=<AB<>>B>9?<AB;:>BB@@<B?>3A@@ +430_1080_625_F3 4 * 0 0 * * 0 0 AGAACTAGGCCTGACACTAGCCAGCCGGGCGTCACTGCAAGGAAACTGCC B=BBBBBBBB>BBBB@?BA@B?@AB>A@AA>A7A@B?+@7A>A?<B-=>@ +430_1105_227_F3 16 chrX_part 27741 37 49M * 0 0 TTTGAAGTCAGGTAGCGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGG ]]]]]]]][\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16A32 +430_1195_1598_F3 4 * 0 0 * * 0 0 CCTTTTTCAACAAGAGTATTTAATGCTCTGCTGTTTAAGGCCCCTCTCCC @B@BBBBBBABBB@BBBBBBB@AA><6.=>@=5<BA4A5>@8A7B>48:7 +430_1270_1392_F3 0 chrX_part 27268 37 49M * 0 0 GTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGC ]]]]]]]]]]]]]]]]]]]]]]XW]]]SU]]]]]]]]]]]]]QT]]]Q[ XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +430_1280_786_F3 0 chrX_part 28246 37 49M * 0 0 AGATATACAATCATGTCATCTGCAAACAGGGACAATTTGACTTCATCTT ]]]]]]]]]]]]]]]]]]]]]]]SX]]]]]]]][]]]\RW]]]SZ]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:44C4 +430_1307_10_F3 0 chrX_part 26911 0 49M * 0 0 GAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCT !"]]]]]]]]]]]]]]]]]]]]]]]]]]ZR]]]]]]]]]X[]]]]]]]] XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:47T1 XA:Z:chrX_part,+12244,49M,3; +430_131_637_F3 4 * 0 0 * * 0 0 ACCAGAGTTAAGGGACCCTGATTGGACGTCCAGCCACCAAGAGCGCGAAA 8??<>>@@8B68>?9=A8?=BB<AAA>0@;@<<A<>A9B@>A8=:@=A?; +430_1403_722_F3 0 chrX_part 12260 0 49M * 0 0 TTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:R CM:i:1 X0:i:3 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:28C20 XA:Z:chrX_part,+14821,49M,2;chrX_part,+26927,49M,2; +430_1406_34_F3 0 chrX_part 26518 37 49M * 0 0 CCTGTGTCCACGTGTTCTCATTGTTCAATTCCCACCTATGAGTGAGAAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:10T38 +430_1531_1322_F3 0 chrX_part 26775 25 49M * 0 0 CAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAATC ]WP]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\\ XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:46G2 +430_1586_641_F3 0 chrX_part 28277 25 49M * 0 0 ACAATTTGACTTCCTCTTTTCCTAATTGAATGCCCTTTATTTCCTTCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:31A17 +430_1684_261_F3 16 chrX_part 27257 25 49M * 0 0 TCTCCCATTCTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGC QS]TU]]]YXVX]XJQX]]]][]YS]]]]\]]]\]]]]\]]]]]]]]], XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9T39 +430_1726_1548_F3 4 * 0 0 * * 0 0 TTTTCGACGACGAAGCTGCAAAAAGACATAGGCCCGAGGAAGCGCTACAC ;BBB=9@BAA3AA@>4=A>?<A@@=8<?;@8@@>>2=>8A69>5>4<==< +430_1779_172_F3 0 chrX_part 25672 37 49M * 0 0 CTGGAAACCATCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]][[]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_179_99_F3 0 chrX_part 14832 37 49M * 0 0 CCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_1871_988_F3 0 chrX_part 14560 37 49M * 0 0 AAGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCC ]]]]]]]]]]]]]]]]]]]]]]]TO]]]]\]]][T]]]]]]]]]][]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T47 +430_1994_1381_F3 4 * 0 0 * * 0 0 GACTCGGTCTCAGATCCAGGAGACTAACCAACCTTGAGGGAAATTAAGAG @BBBABBAB==ABB@>A@A?A@B?A>B@=?@AAAA=AA@8;ABBBAA?@8 +430_392_28_F3 0 chrX_part 12248 0 49M * 0 0 GGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTT ]]]]]]]]]]]]]]]]]]]]]]]]][]]]]]]\]]]]]]]]]]]]]]]] XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:40C8 XA:Z:chrX_part,+26915,49M,2; +430_491_367_F3 0 chrX_part 27259 37 49M * 0 0 TCCCATTTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]ZX]]]UU][]]]]]ZHR] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_607_895_F3 0 chrX_part 26847 23 49M * 0 0 GGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCG *]]]]]]]]]]]]]]]]]\]]]]]]]]ZZ]]]]\]]]]]]]]]Z[]]]] XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+14741,49M,2; +430_688_525_F3 16 chrX_part 27375 37 45M1D4M * 0 0 TGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGAATGGTATGT WW]]]]]Z]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]"!] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:45^A4 +430_691_1191_F3 0 chrX_part 26852 0 49M * 0 0 GCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:R CM:i:0 X0:i:2 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+14746,49M,1; +430_693_248_F3 0 chrX_part 14829 37 49M * 0 0 CCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCAC -]]]]]]]]]]]]]]]Z]]]]]]][]]]]]]]]]]]]]]]]]]]]]]]\ XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_78_1025_F3 0 chrX_part 14935 37 49M * 0 0 TTGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]Z]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_821_1672_F3 4 * 0 0 * * 0 0 ATCGGCTGGCGCCAAGAATGTATTTGACGGATGGTCCATCGACGGCAACC A@?AAAAAA@=?:BA>B@>ABA?@A?B>:=@?<<:@>B=74@B;=><@65 +430_874_1668_F3 4 * 0 0 * * 0 0 GAGAATTAAGGAAGGGAGCTAGCGTACTAAGCATACGGACGAGACACCCG A@AA>A@AB=@BAA@A@>@?B@=@?B@:A@?>:>A>=69@=@8A@@:/9? +430_89_1672_F3 4 * 0 0 * * 0 0 GGCGGAGATGTTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCG B?B?9@B@>=A@B=>A>?A@B<@==?=?@;>7A?>53A;>32@BAB>6?; +430_900_444_F3 0 chrX_part 26504 37 49M * 0 0 GTGATGTTCCCCTTCCTGTGTCCATGTGTTCTCATTGTTCAATTCCCAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:11T37 +431_1029_654_F3 0 chrX_part 27939 37 49M * 0 0 GATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTATCC ]]]]]]]]]]]]]]]]]]]]VK]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:17G31 +431_274_859_F3 16 chrX_part 14611 37 49M * 0 0 TCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGA ]]]]XT]]]]]T\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +431_362_522_F3 4 * 0 0 * * 0 0 CAGCCATAACGCGAGAAAGAAAGAGTATACGATTCAAGAATTAAGAGAGG ?B@?>ABBAA>B?A?@A@A@BA=A<8@>A?2@A@>AA?A?@<@A::779> +431_427_471_F3 0 chrX_part 28034 37 49M * 0 0 CCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]WT]]]TR]]]SU]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A34 +431_436_304_F3 0 chrX_part 26555 37 49M * 0 0 ATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTAC ]]]]]]]]]]]]]]]]]]]U]]]]V[]]]]]]]]X[]]]T]]]]]][]\ XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:11C37 +431_44_655_F3 4 * 0 0 * * 0 0 GCTATTAGCCCATTGTCAAGGCGACAGACACACAACAATCCGACACCATC >-<=>@@4:=>@?A:>=9=::::=:5<:<66=7865<9;<59=13:+<;; +431_50_371_F3 4 * 0 0 * * 0 0 CGGCCCCGTCCAGAAAGAGAGCCCCGACTCCCCAGGGCTACCAGCATAGA =AA@@AAAABBBAB@=@9@A@A@A?>B<??AA>@;?@?@>B?6=B7@8A@ +431_510_914_F3 16 chrX_part 1438 37 49M * 0 0 TCCTTCTATAGAGTCTAGTTTGTGACCATATTTCTCATTCCAGAGGAAA ]]Z]V[Z]]]]]]WY]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +431_524_1355_F3 16 chrX_part 28191 37 49M * 0 0 GCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +431_753_1184_F3 0 chrX_part 27127 37 49M * 0 0 GAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTG Z]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:23T25 +431_933_606_F3 16 chrX_part 27360 37 49M * 0 0 TGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +@PG ID:bwa PN:bwa VN:0.5.9-r16 +@SQ SN:chrX_part LN:37500
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bwa_wrapper_out5.sam Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,420 @@ +853_1026_2018 141 * 0 0 * * 0 0 GGAGCTATTGCTCAGAGGCCATGTGGTGTCCGTTGGCGTTTGTGCTGGTG 9<#64>;#659;#%61;'11&<+7#9=-3(3:/3342&)361&&(34#%, +853_1026_2018 77 * 0 0 * * 0 0 CGGTCTCCGTACGACGATACGCTTTACGGTATAAGCCAACTGGAGTGGGT 6<7=7;6,7=(6928:#;#.8#$'7###4(%/#$.'')0'3$(&)&(2** +853_1027_1303 137 chrM 3893 37 49M = 3893 0 GGGCCCATACCCCGAAAATGTTGGATTACACCCTTCCCGTACTAATAAA ]]]]]]]]]]]]]]]]]]]TS][QV]]][Z\]YXTWWYYQXXYML[TK' XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1027_1303 69 chrM 3893 0 * = 3893 0 GAATTATTCTTTTTCGGCTTACTATACACTTTACTAAAATCCTTAAATTA *,10,,;0##3##&#%&#&(%##&##$&#%####%%&$#&#####$##$$ +853_1055_941 141 * 0 0 * * 0 0 TCTTGAGGTTGCGTAATTCACGGTGAAATAAGGAATAGTATCGTATCGAA 5&1)>3175@6//;@:3/)=5&$#&&&&&&&%&$'&&%&)&&$&&&&/&) +853_1055_941 77 * 0 0 * * 0 0 TCGTTATGGAATTATCGATTCCGCTAAGCACTCGGACCCCAAACGTACCT AA@<@@AA=?@AA?@A@@@@?@A8>>@A><>77=>>=>=>>?=A:<1>8@ +853_1056_37 117 chrM 1193 0 * = 1193 0 AAAGCAAAGTGGGGGGTAGAGAAAGGGGGGTTGGGGCACTAGTCGATAGC (&47&&,&,&-*):164,5511;9;6/5;:0':15&,;;24'06/<6:): +853_1056_37 153 chrM 1193 25 49M = 1193 0 GGAGATAGAAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAA !!(BOW05\WSGGRNOPLLNRX]]XY]]]]OP]XVVW]]]]]]]XU\]] XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_1075_559 141 * 0 0 * * 0 0 TGAGCGCCACAGAGGGGAGTGAAACCTCGCTTCTGTATATTAGGGTAGGG #&5*&&(1&%&)2$,=(5+;9(0$2:&)%%$)1#:(#)2*,(',)#(,,# +853_1075_559 77 * 0 0 * * 0 0 TCCACATGACCTCTACAACAGCCTAAAAGTATCAAGCGGCCCAGGTCAAA 86*0.#&1*,4#2'&/'%1)152+02'9#))&)%&*&'%+*0#'#&-.$0 +853_1076_58 137 chrM 2475 37 49M = 2475 0 CAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCTTACGTGAT ]]\\\]]IIUW]JJ\\]YYYZ]\\]][USZZZQOWX]YTRQ\OIPQWNE XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1076_58 69 chrM 2475 0 * = 2475 0 ACAGGTCTAAGCCCGTAAAGTCGATCACGGACGGGTCGGCTTATATAGGC 78=89::;::8<:3<<;<9<8948;73:<<59::8:96:=(67881599, +853_1091_1124 141 * 0 0 * * 0 0 GGAAAGTCAAAGGAGAGAATCGGCCCTGGAGGTGGCGTAAGGCGGTGTCC =?>@A??>@<<>9;9@>5;<A;??>A?:<>?;5:9;674;<518:5$=09 +853_1091_1124 77 * 0 0 * * 0 0 TTGCAGTCCTGTGCGGGGCGGCGGATTCGCTGCCTGTGCTGGGGGGTGGG 6;;;<===<@9?4:A<>9=>8;=<6=>/5578))2.&''(&%$$-+./$, +853_1092_230 117 chrM 197 0 * = 197 0 GATACTTCGTGCCTGGATTGTGCCTTTCTTTTCTTGGATCTTTTCGTCTC 0)/8'/785%+59539,67%1974*)/;5+:2=7(9-=2,//;3&3,>)1 +853_1092_230 153 chrM 197 37 49M = 197 0 ACAAAGTAGCTCATAACACCTTGCTCAGCCACACCCCCACGGGACACAG JX]YUTTOU]OO[]]]URUY[XY]Y[]][]]]]][[Z]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1G47 +853_1094_1720 137 chrM 7802 37 49M = 7802 0 ATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTCAAT X[]]]]VRSYXRY\]]]]\]XPRTTYXUSRUVYILXOSSMOQSLTSNXU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1094_1720 69 chrM 7802 0 * = 7802 0 TCTAAGTAAGCCTAGCGTCCCTCTATGCTGTAGTGACCAGAGAGATTGTC 730,<8814/7479>7<7/1=;/:)=2;;,<<<;55=;7<==8/,:;&7' +853_1094_215 141 * 0 0 * * 0 0 GCCTTTCTCCCTCTCCTCTGGTTTCGCCTTGGAACAAGCGAAGAACAGGC 4)&/-,1&$77/,.114('(1+)%'*0#,3$$#,#'&(#$$)#,$%3,#+ +853_1094_215 77 * 0 0 * * 0 0 GCGAACAGGGACGCAGCGGTGAACGATTTTCGCCTCCCTCACCGACCCCA 8;8.,:/*2./:*#3.2+2'(82&)$&266#4)(2/'*%1%$4'1*-:.3 +853_112_119 141 * 0 0 * * 0 0 TCCCGGGACAACGGAATTAACAACCCCCGGGTGGAATCGGGTGGGAGGCG ))&)994&,/1(+-+.-('(02)145,.&42,#&).,&(-0.%,',%:(0 +853_112_119 77 * 0 0 * * 0 0 CCTAGGATAATACGCGGACAGGGGAGCTCCGGGGGGAGGGGACGGGGCGG 7)&8327,(41&&),%1/)%+242(1,)')&15,)&05#$50,$$87&.$ +853_112_253 137 chrM 1041 37 49M = 1041 0 ATAACCAAAGTGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGAT WTVVUWTQYWRMT][YTWNITY]ZSW]]]RU\Z\]]]YTWVSTWX\ZM> XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_112_253 69 chrM 1041 0 * = 1041 0 GAACGCTTATGGGGTCCGCTAGCTAACGCCGCCTGGCCAATAACTATAGT ;9;97857&:;6;&983;4=83/,::2=,8;7(&<;/8+275(/9-1&(; +853_1138_1582 181 chrM 7649 0 * = 7649 0 TCAGGAGCAATGGGTCATAGCGTTGGTGTTGTTGGAATCAGTGGGAACGC 86<8;?5:99>6<>/@=9=8==7=@=<7;<><:?=@?;>@<9<=?@@@=? +853_1138_1582 89 chrM 7649 37 49M = 7649 0 GATCAAACCACAGCTTTATACCAATTGTTCTTGAACTAGTTCCACTGAA \]UPSS\RLW\]RPYY][Y]\]]ZY\\[Y]]]]]\]]]SS]ZVW]]][\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:28C20 +853_1139_914 141 * 0 0 * * 0 0 GAACTAAAGCCAACGCGGCAAACCTTGTGCAGCCACCGCAAAACCACACC )4#%&+2%$,/$##*000$&.2(,'',,#'&#%%)%%#+,'-&$,$*&)* +853_1139_914 77 * 0 0 * * 0 0 CTATGAATCAATTTGAATAGTCGTCTTAAAATATGGCACCAAAAGCGATC <(),)&6:$&>'8)('$&5)$*'#+'1#.6,)#$1&('',&6&+',&&+/ +853_1144_824 141 * 0 0 * * 0 0 ACCGCAACATGCTGAATATGACCTAGCAAACTACGAACAATCTGAACCAC '8'..1/#3)()&$%'/(&&#((('$1(.#+))',$)%(#(+),,,#$.) +853_1144_824 77 * 0 0 * * 0 0 GCTCGCTCTCAAAGGGGAGAGGGAAAGAGCTGCTGGGCTGGGGGACCGTT '(')%&,:4'.+4.:4(/028:9;:;01:;/6-(8344)/#++1),&9)& +853_1145_305 117 chrM 13509 0 * = 13509 0 GGCCAGATGTGGGCGAGCATTCCTGTCAGTACTCAAAGGTGTAAGACATC <=;>=883>6=>;=:8==;=?>;=<==<>><=>=:9;;<=?>><>:<=?= +853_1145_305 153 chrM 13509 25 49M = 13509 0 TAATTTCCACCCAAAAAGGCCAAATCAAATTATATTTCCTCTCATTCCT SY]#)]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:19A29 +853_1148_1437 141 * 0 0 * * 0 0 TAGCGGGGCGTAAGAAAGTAGAGTTGCTGGAAGATACGGGAAAAGAAGAG 59)&&;')&&4,1)&/;&(-)1&/(6/,0,1<<,:<5(748':;9==/7< +853_1148_1437 77 * 0 0 * * 0 0 TTTTCCAGGTGGCGTGTCCTTAGCAGGCACTGTGATGCTCCTTGTTTAGA 3875((77'%//28,(884:9/(;$59(03%%(5$'%+)$)&-.7513(4 +853_1148_420 181 chrM 5650 0 * = 5650 0 TGACCCTCGGGCCAGGCGACCTATATGTCCGTGCATGTCACCTAGCGCAG =<:5;<1:,:=8;==?9;><>><3@><;@>@==A@>?:?@?=<A@=@>>? +853_1148_420 89 chrM 5650 37 49M = 5650 0 ATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACTTCTTC UVVVFA<JWQXSU\RPSWOJP09YPT]]XSZ]]]JO\]]XX]]]UUZ\# XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1149_1929 137 chrM 8987 37 49M = 8987 0 TGCTGACCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]VY]]Z]]]ZOTJJYTNV]]TO XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1149_1929 69 chrM 8987 0 * = 8987 0 CTAGTACCACCATTGTAGTAACGAGGGCCGTATTTAGGAGGGGCGCAAGG ><:<=98>;;>=<>><@@==>=A=<<;><;>:><>9<?<:><<<;>;<>< +853_1149_239 141 * 0 0 * * 0 0 TCCACTCGGCATCTCTTGCGACCGCTTGAGGGGTCTAGAAAAGCCCTGGG $$+,#2#',+*%0'',#$*4(8#'0$5&#+0/4+*0+5%&(2)#&3/('+ +853_1149_239 77 * 0 0 * * 0 0 CTGACCGCTATAGCGTGCGGAACAGGGGGGCCCTCTTCAAGCGGGGAGGG 3<51,*1*)88&%:1%+)%8'$//0.15*4';195/&//'9;(&38)7&- +853_1231_1371 141 * 0 0 * * 0 0 CGCAACGTTCGTTACCCCTGTGTTTATACCTGATTTGAATTTAATCGAGG #:2+%%-,#,-/''''#&**+.#%&,*)#*#1$$&+%$%'%&3$'/$'(/ +853_1231_1371 77 * 0 0 * * 0 0 ATATCTCCTTCCATTTCTGCCTGCGCCTATGTCCTTTTAGGGGTGTTTGC ,/0,.#'#$954),&#-',;.*##*(*.'82#$#2*$*#(%%&###,'#+ +853_1231_1635 181 chrM 3568 0 * = 3568 0 CGCATGTCAATCTGGTCCTTCATGCAAAATCTTGACTGAATTAATAAAAG 37):115'<654068;15:98:,67:74<9967;=<65@9:9;?;<;=>< +853_1231_1635 89 chrM 3568 37 49M = 3568 0 AACATGTTCCTTCCTATGAATCCGAGCATCCTACCCACGATTCCGATAT YWRUYRTQEFQZ\WY][SUZZYX[]]TQ\WY]VV[]]ZW[]\OR]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1232_516 117 chrM 1292 0 * = 1292 0 GTTGGGGGGTTGAGGAAGAGGGGGGTTGGGGGGTTGAGAAAAAGGGGGGG 4),%/-61&)0/'&&&4&&&,4/&-*5)&)/5.&&)+(&'*(,&'))685 +853_1232_516 153 chrM 1292 37 49M = 1292 0 CTTTTGCATAATGATTTAACTAGAATAAACTTAGCAAAGAGAACTTAAG !8[04XW]]ZZX]][XV]ZW]]]]]]\]]Z]]]]]]Y]]]\V[]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1232_940 141 * 0 0 * * 0 0 GTTTTCCTGTGCCCGAACTCTTGGGGATTATTCGCCCCGAACGGTTCGTA //&)3=65://7&/,1@15,)),33=1,<),,3(3?))//,),)6,39)' +853_1232_940 77 * 0 0 * * 0 0 TAGGGCTAAGTGTCGTGGCTGGCCCCCAGCCAAAACTTTCGCTTCTACCC >175()<>>1&','95'/A&3,/?315@,&/',,,&&5,3/&1)&1'1<' +853_1236_169 133 chrM 3979 0 * = 3979 0 GCCTCCAGCTTATATACTCGAGGAGGGATATATTGAACATAGGCTGGTTG 8>9<:6<,.&99864<;>2);=52,:<59/<67<*;<:&+9:6&2<<<:) +853_1236_169 73 chrM 3979 25 49M = 3979 0 CTAGGAACTATAATCGTTATAATAAGCTCACACTGACTAATAATCTGAA ]]]JJRQNV]]WUOOYKR][$"!!SSXWIKTXXW[TNRGL]95KADHGM XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_1237_10 141 * 0 0 * * 0 0 TAGCATGCAGACGAGACGCTCCATTTACGGTCGAGAAGTTTAGGTAAGTT 6/<779>86=-4886:>:37==:1;729=2</===6:;,6/;66)((&14 +853_1237_10 77 * 0 0 * * 0 0 AACAGATAATACGGCCTGCTTTGAGGGCTAACTAAAATGGGTCAGCAAAC (,,;/)&5/()&=)3(&;<:3)=3=)/=&=-.8,9;<=5;,&141<,;/< +853_1242_1158 133 chrM 2264 0 * = 2264 0 GCCTTTCGAAGAGGGCCAGCGTCTACCAGACTAGCTTCCCTAGGAACAGC =@<=;@@<>==A>>@>=>@=A:>@>???=&;)19(,,&+%+&(&3'3&,& +853_1242_1158 73 chrM 2264 37 49M = 2264 0 CAATTTCGGTTGGGGTGACCTCGGAGAACAAAACAACCTCCGAGTGATT ][X]]]]]]]]]]X]]]\]]]]]]]]]]]]]]]]]]]]]]\OTRACKW] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1243_871 141 * 0 0 * * 0 0 TCTGAGACGGCAAGAGGTGAATCACAGATGGGCGTAAACCATTAACTTGC 1&?()&,1>>,(=&:88>/>7=1:77=118:75/988:57283/&))'** +853_1243_871 77 * 0 0 * * 0 0 CTGCGGGTAACGGGATGGAGAACGATATTTGATGAAGGTGGACCAACCCG 1),)*=3/4=,9<?,%46//./+1,&1/1,)<)8&,/7(>79,);668); +853_1265_969 141 * 0 0 * * 0 0 AGACTCGGACGGCCGAGGTTACCCCCTTGTTCCCCGGGCGAGTCTACCCC &82,4,54'),%&)'0('.9.$9',;1(#%88)*#8&(,%19,#,871*# +853_1265_969 77 * 0 0 * * 0 0 CGGCTGGGGGGGCGTGATGCAACGTTAAAGGGAGGCTCTTGTCAAGAGAA $<)'(')1.8:)()8(,&<//55,'&3,))'846164.001-/+381/72 +853_1266_828 113 chrM 105 25 49M = 1042 937 AATAAAATTACACATGCAAGTATCCGCACCCCAGTGAGAATGCCCTCTA /3[X]KFLS]]]]]]]]]]][Z]]]]]]]]]]]]]][]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:4G44 +853_1266_828 177 chrM 1042 37 49M = 105 -937 TAACCAAAGTGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGATT \Y]\]]]]]][]]WY]]]]]]]]]][[]]]]]]Y]]]]]W]][T]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1267_170 141 * 0 0 * * 0 0 GGAGTGGAGGTGGTCGCCCACCAAAAGGGCCAATTCCGTCGCCATCGCCT &%%#+,4,##,,8.,%/#'*#72&-,.#*2123-&,4$2#,2(.(,,',# +853_1267_170 77 * 0 0 * * 0 0 TGAAATCGGGTTTATGCCTATACCGAGACCGGGGACCAACTAGGGACGGG 30:65905%/#52:2&3(7,532).4;,,+&3$+-(2)50*&0%'&1(1' +853_1277_1774 133 chrM 1180 0 * = 1180 0 TCCCTTGACAACACGAATATAGCCAATTCTGCACTATCCTAAACATCACC AA?=??>;<>>@;>A@>:?<,3%&1,,(89'92+4&0)-5+&1,/15%/, +853_1277_1774 73 chrM 1180 37 49M = 1180 0 CCATTAAAGTATAGGAGATAGAAATTTTAACTTGGCGCTATAGAGAAAG ]]]]]]]]]]]]]]]]]]]]]]TQXY]]XQZ]]][\\]ZVY]]YWX]]O XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1278_1160 141 * 0 0 * * 0 0 GTAAATCCGACCCCTAAAGAGCCAAGAACCCTAACCAAGGGTCAAAAGAA ;AA==A?:A>?A<?;AA=;79?8><7@<:::8<=97=@9<953=A<8,>6 +853_1278_1160 77 * 0 0 * * 0 0 AAGAGCAATGGGAATGATCATGCCGCTGCGTAATGGAATGGAGTGGAGGG A=<<@AA?>@@@?;?>:>A?>?AAA@7<<,,&//1(+)&9+&&&85(1&9 +853_1280_1640 141 * 0 0 * * 0 0 GTTTCACCCCCGTCGATACATACTAAGACCTAACGTGCCCGAACAAAACG 8>*2#8+#%#3/##&=:#$.=2#+1<6&(%@1#($>)#'#8(&$+=&&$' +853_1280_1640 77 * 0 0 * * 0 0 TGGTAAGACTCCTCCTTTCGGCCCCCAACCCCCCCCCCAACCGAGCTGCC A;?<;<@<<>>A=44:??:<>:=74<:>48;=583==9/8=9:228122( +853_1280_1971 141 * 0 0 * * 0 0 ATTTCCAAAGGTTCCTTGAGGAGAAGTGTAAACATTCTCAAGTCCACCAA ))(,8.)1)+/&',)*76&85:4'5$$'#2/&(/#.%#&4.'***-+'37 +853_1280_1971 77 * 0 0 * * 0 0 TATTTGGTCAGGGGCGAGGGCGGCGGCTTCAATCTTGGGGCAGTGGGTTG )9177)6,3)):16&'/,1:6<()?))()(>5><(1=<?1.&)>/6&(1, +853_1280_287 133 chrM 8561 0 * = 8561 0 GATCGTTCGCGAGCATCTGGCTTTCATGTATCTGAGGCAGCGCAGAGTGC >?A??>A>@A?>@><>?><@>@?<@=@8@;@:>;<>/=6<8193@86,/) +853_1280_287 73 chrM 8561 37 49M = 8561 0 AACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGTATTCACT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y]]\] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:24T24 +853_1281_1171 117 chrM 4957 0 * = 4957 0 TTCCTGATGAGGCAGCCTGGATGTATACTTGTGTGTACCACCTGATTGCT '+)&%(%:2&'*151;3:<49>:=<:9;>><<?<=:/=A=?:<A;?<:@< +853_1281_1171 153 chrM 4957 37 37M1D12M = 4957 0 ATACTATCAATTCTGGACTAGGAATTTAGGTTAACATCCAGACCAAGAG FSREOZRIHKRVVZ]WLR]]\YWZTW]]]YRZ]]]]\X]]VVY]]]]]] XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:1 XG:i:1 MD:Z:12T24^C12 +853_1289_1050 181 chrM 573 0 * = 573 0 TTTAACTGATTGCGGCGGACCGGTTATTGATATAAATGAACTCATGTAGC %*&&$(+36274':;<:5=6;3;:9:675:<74;:?6=:7878:;>>57= +853_1289_1050 89 chrM 573 37 49M = 573 0 TAGCAACAGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACATCCCTCT AFW2$ETYZPIR\]XKQ\XUTQ[[@F][]MJ[Z]XQNS]LBMT\XOUWU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1290_58 141 * 0 0 * * 0 0 AGACACAGAAGAAAGACATCATCGACAGGTCCATCGTCGTATGCCAGAGC :846:=:>;;>:9:=8=<=@:;;=;,:9?@;9;><3?=6<1=6=98:/:; +853_1290_58 77 * 0 0 * * 0 0 ATAAGAAGGGGGTTCAACGGAACCGTGAACGCCAACCGGAAGTTAATCCC )<:<;9:>9:6==<90;<<9;;=98<;=<:1=<9.7<;6<1;>8;;<9<5 +853_1297_1934 141 * 0 0 * * 0 0 TAGGGCTCACGGACTCCATCGCTACATCCCTCGGGGTGAAAGAAAACAAA 4*%#*,9)-*1751,197()*3-,#94&(-),$##.(#1/7%+#,0&,'0 +853_1297_1934 77 * 0 0 * * 0 0 TAATTTAGGTACGACTAACTCAATAAGCTAATTGAATGAACTAGGACTTA #&6##)0$)#4)#2##44&###7%/2##%1+#$,#*###$##5$#-###, +853_1297_514 133 chrM 1985 0 * = 1985 0 CTAAGTGTGTAACAACCACCCAACACGGCACGTCAAGATGCGCCGATACG 8@8;9>795A<8=9:A?7;@;??;5:><886<;:=6:9:8.=@=:4:9== +853_1297_514 73 chrM 1985 37 49M = 1985 0 GAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGGCCGCGGTATCCTA ]]Z\]]][]]]]UU]]]][[]XLU]]\QR]]NLYY[XU]]\X\][YXNK XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1311_394 133 chrM 7953 0 * = 7953 0 GGAATTGCCGTCGCGCGCTAGTTGGTTGGGCGTGCATGTTTTGGGTGGGT @=<><<?@?A<>?A>0(6)</.;<>:2<><07:<5(0;(4&&0;&.+1%/ +853_1311_394 73 chrM 7953 37 49M = 7953 0 TTGAGAATCAAAATGAACGAAAATCTATTCGCCTCTTTCGCTACCCCAA 0JAJJLX33PV]]]][]]]]]]]]]]]]]]]]]]]]]]]RS]]]]]]NQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1312_213 141 * 0 0 * * 0 0 GATTCGGACAGAGGGCGAGGCTAGAAGGGCGGAGGGGAGCGGAGGCGAGG ?>:<?=?@=@=>;<<<?<=>?9?=:@<;<6<><61:4,1(2.)2&&,+2& +853_1312_213 77 * 0 0 * * 0 0 TCGCGAAGGGGACCCGTTATTTTAATAGTGCAGGGCATAACATTTAAATA 6?;==?@<<==A=;=<;8;99:8:<6>:6;<=:3(9/7986)5(./27&= +853_1321_1372 141 * 0 0 * * 0 0 TGGACTTCAGTGGCAAGGGCGTCTAAAAATTAAAAGCTACCGTCAAACGC @A,>@(5);A&/6>>;??;7>9?19619>1=/<89<3;81>/=3>7/?/9 +853_1321_1372 77 * 0 0 * * 0 0 CTTTAGCTCGCCTCAATGACCCGAATAGCACCCAGAGCAAGACTCCGCAT 5,7),=/'16=1,,':&,5);118181/18<'6;6/1@9,<9)>,,,&>( +853_1322_846 117 chrM 3881 0 * = 3881 0 TTTTTTTCAAGTTTTCTCGGTTCGTTCGTCTTATTGGCTTAAATCCTCAG 7'8&:41-,72'$(6;-&$,5-('(4-0#;618,47-5)44#;5::;;;2 +853_1322_846 153 chrM 3881 37 49M = 3881 0 AAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGATTACACCCTTCC ]YSUOT]YV]]]]XVNP]]]][]]XTW]\\\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1359_2004 117 chrM 8663 0 * = 8663 0 CGCAGCTCGCCTCAGGAGCACTTTGGGACGCCGCTATTTGTGCTCCCTGG ,&94:;&75<=&898947:=>8<2?<><=>A?17;?<?.>>=A=@A<<=? +853_1359_2004 153 chrM 8663 37 49M = 8663 0 GCTTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGAGCCCTAT ZK!%VPT]]\]]]\\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1359_649 141 * 0 0 * * 0 0 GACACCCGCTCGAATCCATACACGACATAAGGGGCCTCCTGTGGAAAGCA 7>=41=&7/-)&+,8)/:):7,:<7)/0<:&&;(4(&(86'953.3>'./ +853_1359_649 77 * 0 0 * * 0 0 GGAGAGGGGCTGCAAAATTTACCGAGCTGCTTCGAGGAGAGCCAAGGCGA <9;5<=;;::6;:;;1?88998<:>4:*91),4.5$7#,4'#$(,5.%)2 +853_1360_1130 141 * 0 0 * * 0 0 CAGCTCCATAGCCAATCTATTGCTCACGCAGGTCCGCGCCTACGACGTAT A@AA><:@8>@=AA@>8@A<?<@?@;=<A;A9=?A;<?>:>1>68<6?<; +853_1360_1130 77 * 0 0 * * 0 0 TGCTTAGACTTTATTGCAGTCATAAATACCTATAATCCTTTGTGGTGACA >A@@<9?A:?>>?8@68?=>>9>/9<<44193577>;:;8?#,5.##4,) +853_1361_389 117 chrM 15925 0 * = 15925 0 ATCTTTGGCTTAATCCAGTTCTTAACGACGGGCATTCGTGATACAGCTGT <94:)746=)9:6>)98798><<A=78A<=A?<A==:;7@>4?8>?=9=7 +853_1361_389 153 chrM 15925 37 49M = 15925 0 ACTAATCAGCCCATGCTCACACATAACTGTGGTTTCATGCATTTGGTAT VV]VYYS\[]RP]]]ZY]]]]]]]]]]]]XUY]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:31A17 +853_1366_1495 141 * 0 0 * * 0 0 CTTGAAACGGTACCAAAACCAAAGCGCAACCCTGTCCCGTAAATTTATAT AA;>9>>:<<::?8;>7:>597<>/@6=:8>9=A/:;>:;/9==92/819 +853_1366_1495 77 * 0 0 * * 0 0 AACCATAAGGCGCTAACCACAATCGGTGACACCGGCTCCAAGCTTAGCCA ?;<9)6)&'&;+22'80:-%:&/3.<&)0(;):69;#)67;(8+&<-'%8 +853_1367_802 137 chrM 1422 37 49M = 1422 0 ATTCATAGGTAGAGGTGAAAAGCCCAACGAGCCTGGTGATAGCTGGTTG ]]]]]]]]]]]]]]]]]]]]]][]]]]]]]]]]]]][]]]PEY]]]]ST XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:4G44 +853_1367_802 69 chrM 1422 0 * = 1422 0 GTTGTTATAGAACAGTCAACCAGCACTGTCTAAGTGGATTTCCGTGGCGG =<?;$%&<<&(5>='(3><+648A+*:<@#46><#70<>#*.<3237=;% +853_1382_1227 133 chrM 682 0 * = 682 0 CTTGTCCTCTATCATACCAATCTAACTCGACCTTTAGTCTCCTCTCCTCT <;:99:98::8:#5:;:(7:6<#8<6:%0<89,5944,8:9:4/020*), +853_1382_1227 73 chrM 682 25 49M = 682 0 GCCTATATACCGCCATCTTCAGCAAACCCTAAACAAGGTACCAAAGTAA ]]]][Z[\][ZZ]]\XY]][[YY]]][]]UVRQ[[\TSXUVILYPKHS] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:42G6 +853_1383_1269 141 * 0 0 * * 0 0 CTATTGACCAACACAGTTCAAGCCAATTGAAATTAGACTCCCCAGGCGTT /))3(<(152,3),<8:2)37;.6/&7$)1/,$0'%4$3&74).0&0%13 +853_1383_1269 77 * 0 0 * * 0 0 GGGTGCTGCTGTCTCAACGGGCTGAGGGATAGCTGGTGGGAGCCCTTACC ,@)':/)>6:(*'*9&';-(:),4((/,#31;7&/532*8,5:5*75,+1 +853_1395_1324 141 * 0 0 * * 0 0 TAAGGAACCGCTCAACACTTATGGACTCGATCGGCCGCCGTGGTTGAGCC 4*,19./*)96*83;4,/1,)'27)2082,,'*6(&)&*%(*3422-+1+ +853_1395_1324 77 * 0 0 * * 0 0 ACTTTCGCGGCCAAGGCCTCCTCCCTAGGGCCTTCCCGACCCGCTGCGGG )9-',&9*3)9',(1%6%7/4681)11&+:-1/4205()&3',,+$0#%% +853_1396_1014 137 chrM 13417 37 49M = 13417 0 CCAAAAATCAGCATCACTTCTACTAGACTCAATCTGACTAGAGAACATC ]]X]]]\Y]]]]Y]]][]]]][]]]]\]]]WR\]]YX]]]]]]]]QO]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:42A6 +853_1396_1014 69 chrM 13417 0 * = 13417 0 GGTCCCCTAGAGTGGGGCCTCGAACCTACAGATATTGAGTCGGGAGCCCG @<@:===?<;==98<:9>9:=:;@;:;=68::<:::;>:::><<863>9; +853_1412_1664 181 chrM 2467 0 * = 2467 0 TATACGACGAATCATTAGACCTCGGGTTGTGTTCAATTCCTGTCCAGATC (&&&1.)0&1,&$31'.$1-&)#13,*%)+,'$/4,$$*/,5,765)545 +853_1412_1664 89 chrM 2467 37 49M = 2467 0 TAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCT WKT\NDIZ]NMRMTZ]]JH,/NDHHV]TTE>RZ]]XMVVSJJZMRYY]! XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1413_877 141 * 0 0 * * 0 0 AGGTCAGTTTCCAAGGTGGGGGTTGGCATTACGTACCATTCGATTAGATT ?A?<<;A><?;A=<;;>856/>#%###&###%####&&###$$$&#%#$$ +853_1413_877 77 * 0 0 * * 0 0 GACGGTCGTCCCTATTGTATTCGTCTCTCCGTGTCGTGACGTTGCCCGGT &)#*648#,9(.#3&&(#9.2,#/%3)#&555#).%3#19-4#4'3,#2+ +853_1437_116 141 * 0 0 * * 0 0 CCCAAACCAGGCTCGTCCCCTTTAAGATAGTCTCGCCCCCCCTCAACTTG 6>>9;<@7=::=:>=544=54#'8&5-2)#(*)4,&%+#',2-&+&0-*2 +853_1437_116 77 * 0 0 * * 0 0 AGCTGCGGCAGCCGAACACGGCACAAGGTTGGATAATCACCGGAAGTGGA $;,)42'#2(#&,,#%#2,2%,',42#$))#*428#%$2.%$%4%*#)%& +853_1437_1533 117 chrM 9411 0 * = 9411 0 CGCAATTAAACTTAATGCGACATAAATAGCGGCATCGGACCTCCATACTG #%*(4-#(4%$#$&4+*2586;9A<89:><5=?>;=?>=:<=8>>:?<@> +853_1437_1533 153 chrM 9411 25 49M = 9411 0 TCTATTGATGAGGATCCTATTCTTTTAGTATTGACCAGTACAATTGACT ]]]]]VV]UY]][]]VX]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:1T47 +853_1486_1272 181 chrM 9431 0 * = 9431 0 ACTATGAAAAGCCTCCCGACGCAAGAAAGCATTCACGATATGGACATAGC 22%-,))%99<168=961#151,#/9(3%89/76:7)55965689<<7(7 +853_1486_1272 89 chrM 9431 37 49M = 9431 0 TCTTTTAGTATTGACCAGTACAATTGACTTCCAATCAATCAGCTTCGGT NHVQR]SN\][RQO@MTMYUVVT]SU]]OJYYXVSSKOSSTRS]]XUOU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1487_496 141 * 0 0 * * 0 0 GTCGCACCCCTCCTAAACCCCAGATCAAAAACTGCACCCGCGACCCACTC 6969=651<=::86774;7:<9=/69>0366/8,,8=:</6&31(3,/&) +853_1487_496 77 * 0 0 * * 0 0 TTTATTACGGGCGACGAAACGAATGGTATTTCCCTTGCGTTTTTCGCTTG <,'+856638:)0*.,+&.;7&1+;5-&1779<0:+3)/&+;1&,7()(( +853_1488_605 141 * 0 0 * * 0 0 TCGCCGCCAAACGATGCACTAATTTGCTTACCGGCCAGGCACGGATCGAA 0)&)&1)/1(6)&(+),1=/*&&(&41,',)&1/(/,9/)1//<)&:15, +853_1488_605 77 * 0 0 * * 0 0 CCCGTAAGGAACGGGGATTAGAAGGATGGCAGGGGAGTGGAAACGAAGGG (%/)'(32+'))1*6776&2%)8&,7)71'2&$5+%))724&0)$('&(' +853_1489_374 137 chrM 14307 37 49M = 14307 0 CCTAATCCTCCAAATCCTAACAGGCCTATTCCTAGCCATACACTACACA ]][NR]Z]]]]]]]]YXWQY]]WZ[\]]]PT]]]PU]]]X[]XR]]]]\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16T32 +853_1489_374 69 chrM 14307 0 * = 14307 0 CTCTTCAAACTGACAGCGCAATGGATGAGGCCACAAAAAGAAACTTTAAA >8786=:8:3:2;;;6(=99.3=5*/,%'(+#7121074(25$0,+%,27 +853_148_1347 133 chrM 14085 0 * = 14085 0 TAAGGCCCGTGCCGGTCCGTCCAATGATATTGGAGGAGTTCCGGAGCAAG A=;@>>?=@@A@?A@>@A@=9?9<A@;9>>>>>7;=8<=;8;?;18?62= +853_148_1347 73 chrM 14085 37 49M = 14085 0 ACTCAAAATAAACACAATATATGTCATCATTATTCCCACGTGGAATCTA #$]]]]]]]]]]]]]Z[]]]][V\\[]U\[Z]KQ]YOQW]]QUYWWZTQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_148_1509 141 * 0 0 * * 0 0 TGAATGTAAATTAAACGGGAGGAAAAATCTCCCCACAATTGAGGCCTTCC ./<&1=35>,/3(6,,1<3*)7,53)69<&(A<8+(;91).8&+7(:&<7 +853_148_1509 77 * 0 0 * * 0 0 GCTGGGTGAAAAGGCCCCGGCTTCACAGAATGTAATTTCTAATAGTCTTT -'-:+&1.,)&&=(=)?7=<=4&,>:(;,&<))))8)+(,'&(4&,(,3) +853_1493_1908 117 chrM 14920 0 * = 14920 0 TTGTGGTATAAAGGACACGCCTTGGTGGCCAAGTTGTCAACGTAATCATG ;<<9:=7<;;9<?=<;9<<=<88?>==;?<==;;=><;===:::>?;<@; +853_1493_1908 153 chrM 14920 37 49M = 14920 0 TTCTCCCCTGACCTCCTAGGAGACCCAGACAACTACACCCCAGCTAACC YY[]]ZX]]YYY[]]]]]]][\]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:8C40 +853_1493_452 141 * 0 0 * * 0 0 GAAAGGACCAAACCAGGAGCATCCACCCATGGCCGCTAAACTAGGAGGAG $*)&'#,,,##(*#'%#%##(#))###%$$$##%###$#)###'#%%(%# +853_1493_452 77 * 0 0 * * 0 0 CGCTCTCCCGATTCAGCAAAACAAACAAGGCTCCACCGTCCCGGGGCCGA '$),&/'53(%$((6'*'(&+%694&(2.1'&1(3&2'9/%)(&)()'(/ +853_1498_1797 141 * 0 0 * * 0 0 TGAAGGTCGCATGGCGCGGATTGCACAGCAGATCAACTGTTTCAAAAACA 3=#&&04&',.8#*&-:&.*./$'#);%.$21'0&&/&###4$&%%0$#$ +853_1498_1797 77 * 0 0 * * 0 0 CCTCAGCGCCACCCAGCTTGGAAAACTAAACAAACAAATAAACTTTCACT &&&&&#&#######&$##&########$&$###&$$$###$$#$#$#### +853_1499_1261 117 chrM 2408 0 * = 2408 0 TTTCATTTAACACCGGGAATGGTTCACAATCAATGCCCGAGCAGCACAGT /2&7=)6&?<)/56<9:<9:7&;7<:<9<89;>9A><>>?5<<;=<=:;: +853_1499_1261 153 chrM 2408 37 49M = 2408 0 ATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGAT ]/4ZY]\\QT]KO]]YMXZ[WOMN]]TW]]]\VSYQSSQXVWQT[RY]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1509_820 141 * 0 0 * * 0 0 ACAAGAGACTACGAGGACACACTCCGGCCCTAAATCGCGAAAAACGGCCC ',.1438/1)&1*3.18,72875),/*&://.4&),+/#+3%5*)56((& +853_1509_820 77 * 0 0 * * 0 0 GCAACCTGACCGTTTACACAACGTGTGGAAAAGAGGTGGGAGAGGGTTGG 18;:.49;5+6/<=879672373=.:;;47$'%06262%562%':5$5&: +853_1510_448 117 chrM 982 0 * = 982 0 CCGCACCGGGCAGCAGCCAGGAGGATTATGGGGTACCTGATGTTGTTTGT ##$########''%$+'4)%0%34)82'2,(/27/,*:4'2177460826 +853_1510_448 153 chrM 982 37 49M = 982 0 CCAAACATATGAAAGGAGACAAGTCGTAACAAGGTAAGTATACCGGAAG QSZ\WTIO[MGR[]]UO]]Y[WWYTSPY]Y[X]]XZV[]TRU[Z\[Z]$ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1511_1886 141 * 0 0 * * 0 0 GACGTCGTCGTCGTCGTCGTTAACCCTAAGGTTCGCGGGACCCCTCAACA 99;<=:>?<;=8;>=;8=<==9:8::==:9,8?:;)0<6.13;+:*5/:) +853_1511_1886 77 * 0 0 * * 0 0 GGATAGTAGGAACGAGATGCGGGGAACCCGTTTGGTGCTCGGCGGGTGTG :A(>/2;&>='7&>::(1678>>:1&(<::11,.<8,(),8>%8</):(< +853_1511_561 133 chrM 1971 0 * = 1971 0 GCAAACCGTTCTGATGTAAACAACGTCAATTTGGGCCTTTACAAAGCGTT ?A===@A?><A8A>:>9;;=@828;'#+99:#'9;;4#>6-1/89,-&45 +853_1511_561 73 chrM 1971 37 1M1D48M = 1971 0 CTTCCCAGTATTAGAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGG !!\]]]]]\]ZW[]]QQ]]]Z]]UT[]]]]]]]]]V[]]]SAMXYTTXK XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:1^A2T45 +853_1530_1652 117 chrM 5148 0 * = 5148 0 AGATTCCGGCATTTCAGCTAGTGCCTGCCCAGCCGTATATATTCGGCAAA +$5/5&$4982/;*;5#:3;(%;:;0'<7952:561);57)#<0-%6;58 +853_1530_1652 153 chrM 5148 37 49M = 5148 0 AATTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTT DM[\UX]]\V[]]]]]]]]]]Z]]]]]]]]]]]]\]][]]]]]]]]]]\ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1530_202 141 * 0 0 * * 0 0 GGGGACTGAAGAGCGGCCATTAAGGGAGAATTGAGGAGAAGAGATGAGAA ;<;99=:99>6>8:8<?:898A=2<7@88>)6#/+,&)(#,'-%#+-*%( +853_1530_202 77 * 0 0 * * 0 0 GGTTCATGGCGGGACATGAGGTGCCATACCGCAACCCTCTAGGCTGATCG /9::8:7;58;0<%;;9=(3;8<1;73;16;1=57686/585:30;/<61 +853_1569_1617 133 chrM 15857 0 * = 15857 0 TAATTGTATATAAATGCTGCATGCCGGGAAATTGTGCAGCTACGTGGAAG <A@=>?><<>=@@?=@?;=<=<9A<==;AA>;57:<?<;75>67695@:6 +853_1569_1617 73 chrM 15857 37 10M1D39M = 15857 0 TTCAGGGCCATCCCACCCAACCTCGCCCATTCTTTCCCCTTAAATAAGA ]]]]]]]]]]]]]]]]]]]]]]]]WX]]]\Z[]]QO]]\OQUSWMNK5I XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:10^T39 +853_1570_1472 141 * 0 0 * * 0 0 CGACGCACGTCCGCAGGTACCAGGAACGTCATCCGTAACCGCGGGCACGC <=<>==;=:@>@<@==AA?A@>A?@<@?=A9>@?;>=9?<9>A>><3;=7 +853_1570_1472 77 * 0 0 * * 0 0 CACCGGGACTAAATTAGCTTCTCGTTCCAGGCGCATCGGACTCACGTTAT @A=?<A?@?A=9=AA=@=;>?>?<@=><=:<@9=,A?;<<7<=61;>9/? +853_157_314 141 * 0 0 * * 0 0 GATAGCAAAAAAAGGGGCCGAGCGCAAAAGCCGACCTGAGCACAGACGAA 9;:5461242#)#*1####('$$$##'#%#'$$%###/$%($#'#$$#+# +853_157_314 77 * 0 0 * * 0 0 CTCGCCTGGAATTTAGCCATGGCTATGTTCTAGGTGCTTTGTTAGTTGCG 79();(1<))&2(5+&8&+.9-'198,',))&&7&:*,4)(6&2&/:&77 +853_157_582 117 chrM 893 0 * = 893 0 ATTTTGATATTGCCTAAGCCAGGAGGATTATGGGGTACCTGATGTTGTTG 2&==93398<:46<@<:?:==6>:<<<=?=>;;<;A;;:>;;><::??:= +853_157_582 153 chrM 893 37 49M = 893 0 GCTTAATTGAATCAGGCCATGAAGCGCGCACACACCGCCCGTCACCCTC O/3]Y[12]PSUUY\]XXYZ\VY]]]]]]]]]]]][]]]]]]]]]]]\\ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1585_2023 141 * 0 0 * * 0 0 AGGGGGATGCAGGCAAGACAAACGGCACGGGCGTGGGGAGAGGTCCCAAG ?>@A>=44@@8<5A<7>:=?577<?867=>4588>:;88<59;<=:;)9= +853_1585_2023 77 * 0 0 * * 0 0 AATAAATATTACCATTTAAGAAGGAATACGAAAAGACGCCGGCGTCCACT :A=>5#:==<+=<==)=?<=&<=<>%<<?;)<=<=#>9<:$<;;:&?3<5 +853_1585_323 133 chrM 8665 0 * = 8665 0 CAAGGGACTATAACTGAGGGGTGTGGAGCGGTTGGTTGGCCAGCGCATTA <;:>?<0<;;=;9781&(,95'+$-+2#,#'',1',$,$1/5+#2)6%&( +853_1585_323 73 chrM 8665 25 49M = 8665 0 TTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGGGCCCTATCA #"]\X]]]]]]]\]]Y[]]]QO]]\PPYZ]\Y\WXULU]PDPYVVSIQ\ XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:39A9 +853_158_402 141 * 0 0 * * 0 0 TCACAGACCCGAGGAAGCTTCGTATATTTGCCACTAAGGGCGTCGGGGGA 5;&35,<55<8<6;<3646:618477::95<92=752071+2339-.#11 +853_158_402 77 * 0 0 * * 0 0 GGTTGTTAAACCGTCCCGGGCGTTATCCACGTGTGATACCCGCGCATGTG 711&$(-)##.,&((&(4('83><-:94,'.;2&*:<0%&7,3#+02#(# +853_158_569 137 chrM 6195 25 49M = 6195 0 ATCCATTGGCTTTCTAGGCTTCATCGTATGAGCTCACCACATGTTTACA $]\YYYQM\]\WX]\\MN][YQS[\WS\YV]]VV]]MFY\]XPSV]SGL XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:30G18 +853_158_569 69 chrM 6195 0 * = 6195 0 TTCGTAATTATATTTGTCGGGCATTATGAGTACGGAGGTTATTATATAGG 8>34:8.56,9/7<=-80.562,994:)3,<#%85(,#7&%,'#3#,#%& +853_1603_1995 141 * 0 0 * * 0 0 CTGGTACCGGTATGAGCCTAGGATAGAGCGGCAACTCTTATACTGCCGGT 9=:8;>>=<==<<>=AA@><A><<=?>?=<<??<<;?;;?<86=<9?=3; +853_1603_1995 77 * 0 0 * * 0 0 CCAGGGAGATCCTAACGTGGAGCCGCGAATACTCCCAACCACCTATACAG :;;;>=<9A==;9:=;6::?:9@<@:8<<;:6><@<<9;@595:684279 +853_1603_500 181 chrM 13884 0 * = 13884 0 AACAGGCCGACTTTGGTCCAGGGGAAACGTTTGGTGACTCAGAATAGGTC %/06321266(/.:504#:7(&,9:39544<<8<95<2>:8<8:=87:<: +853_1603_500 89 chrM 13884 25 49M = 13884 0 CTCAGTAGCTATAGCCGTTGTATAACCAAAAACAACCAACATTCCTCCC ,T]YOQSTUSUY[\XU[]]ZZTY][]]]]]][\]\]]]]ZVX]WZ]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9C39 +853_216_501 141 * 0 0 * * 0 0 CTTTTAATGGGTCCCTCTCTTACAAGGCTCTGTTAATTTTTCCTTTCGAA 85<85,7=47;:627;<6<4<::445934*:5<2)$9&-$273#/#6-.* +853_216_501 77 * 0 0 * * 0 0 CCCTGGCCGGTCGGGTGCGTCACGCGCCTGGCGGAGCTCCTAGCCACGCC />61=+11:/5/+/(&/1'%#:3&;&93(';0$4&*9,&/+))2')65.& +853_216_648 117 chrM 1235 0 * = 1235 0 CGAGGCAGCCCATTGAGTTTGGTCCCCCTTAGTTACAGGATTTCCAGCCG +&'%(14'2,09:7(776;53=99/58>75;88784;/:8)884;7/;6/ +853_216_648 153 chrM 1235 37 49M = 1235 0 AAGGGAACGATGAAAGATGTATTAAAAGTACTAAACAGCAAAGCTTACC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]SU]]]YY]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:19C29 +853_218_1907 133 chrM 1146 0 * = 1146 0 GAATGGCTTGACAAAGGGAGAAACGCATATCCTGTGATGTTATTTAAGAG 5).5<9?642>9+;9<;;:28=4886909479&7,3;	+:,6'5,(&/ +853_218_1907 73 chrM 1146 37 49M = 1146 0 TACCCTTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGG YQOTRVYOS[\Z[XX]\YOS]XW]]\Z[X\ZUZWZ\XVVZQPMKWTUJ> XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_219_184 141 * 0 0 * * 0 0 CAGTAGTTGCATGAGTCATGAGGTTGGGTTGTTGGCAGCTGTTGTCGGCT '*)%%,,##3,1+,,#'&)#+#/-),%(&+$)%#%$&(&/#&(#%#'$%$ +853_219_184 77 * 0 0 * * 0 0 GCATTTGCGACCATTTTGGGGTTGGTGGGGTGGGTGGCCGGTGGGTTGGG /&3&,)/,$)/&)2&#%(:/+#,*&$+$$(&1)/&+1##'&'#-,)&'%- +853_233_615 141 * 0 0 * * 0 0 GCCTTAAATCGATATAGTCGCGGGCCCCAACCGGGCCGAGTACACTGGGC ;@),<%8)(&<(0)<&<)&53.*%/,5,6*/6;.)+>,%.,7,#,,*$%$ +853_233_615 77 * 0 0 * * 0 0 TTATGGATTAAATTTTAGCTAATTTGGCCCCTATGGATAAGGAATCCCTA (7.1:154753447,222383647814041,3+,4.-/%+21((2)2'7) +853_233_834 137 chrM 8993 37 49M = 8993 0 CCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCTTACTCA ]]]]]]]]]]]]]]]]]]]]]]\\]]]]]]]]]OQ]]VY]]SOVQ\]YS XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_233_834 69 chrM 8993 0 * = 8993 0 GGGAGTTCTAGTGGAGAGATTATTCGCCGCCAGCTGCGTTGAGAGATGAA =<<=;><:6:;<<3>=:=8>><<8;<=63;>99099&%,##&'2##%/$% +853_244_474 141 * 0 0 * * 0 0 CGGACAGAACGAAAACTCCTAACAACAGAGCTGAGCAAACCAATCCAGCC *$(5.+###%$$2*+'#$('/(#*$$$$0%'$$3',$(*#&'4(%$#/$$ +853_244_474 77 * 0 0 * * 0 0 GATTGAGAAGGCTGCAAACGGCGAACGACCGGGCGGCCTAAAACCACGGA )15$&/&*,&,,(&&0.,&,07:)/1/4&))96&)'/&''.(+&1'&)'' +853_244_781 117 chrM 652 0 * = 652 0 GCAGCCACGAATGTCAAAATCTGGACCACTATACGGTGTCATAAATTCTT &24)57:,,<=892<?=>;9>989@=;>;:?7><<>;=7=86>>;:9><8 +853_244_781 153 chrM 652 37 49M = 652 0 CGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTT ZOE[\XROW[]ZQJW]I?T]]][]]]]Z]]][Y]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_255_146 141 * 0 0 * * 0 0 GGGAAGAGCCAGGGAGGACTGGGGCTGGAGCAAAAGAGGCGAGGGGGGCG #$##$%###&##'#&##$###&#&$######$####%%$$/$'%$'#$$# +853_255_146 77 * 0 0 * * 0 0 CCTATGTCCCCTGACGGCACGCCGGGTCACCGAGCCGGGCCGCGCCCGCC 5.)8&)'++7:',%'&&,(1)1/8'('%1)20#%,4-$.&$''(1(0(/7 +853_255_403 117 chrM 13900 0 * = 13900 0 ATCCTCAGCACATAAGTGCGTGATTACCGATTGTATCATCGCTCGGTTGT 130>7&9+9:-83?<09=>;85?>=78;<<=99;>)87;>;9;=>?<:8< +853_255_403 153 chrM 13900 37 49M = 13900 0 GTTGTATAACCAAAAACAACCAACATTCCTCCCAAATAAATTAAAAACA 7FFGW]]]RIS\]]YT\]SMKT\TW[\\]Z[]]]]]]][[]]YZY]]Y\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:41C7 +853_256_428 141 * 0 0 * * 0 0 ACGAAGCGGTGTACCTGGCCCTACGCGGAAAGGGGGAAACCTTCCCAAAT @?8<A:A969=<:71?;;<5==>81><1<&??:264@>>/=<-819><() +853_256_428 77 * 0 0 * * 0 0 TAATTCAAGCAGATAAAAGAGTGTGCGCCCACCCTCCAAGGAAATAGAAA 2=<66<=>6::3<,8;>:3<3825,:1:98897,057::24<986:+,:: +853_256_834 117 chrM 9813 0 * = 9813 0 GCCCTCTGGCAAACCTACGGTAAGTTTGCCATGGAATCTTTGGCGACATT ######$$##############$#&####$&$##&##########)#&%' +853_256_834 153 chrM 9813 37 49M = 9813 0 TGAACCCAAAAAGGGCTAGAATGAACTGAGTATGGTAATTAGTTTAAAC DL]TAFU]\TDH]]]WZ]\NU\VZVU\]]]Z]]Z\\Z]]]]WZ]]]WWX XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A34 +853_266_1092 141 * 0 0 * * 0 0 GGCGCGGATTATTGTCTTAGCTTTGCTACCGTTATATGCGCTTGTCTTGT ,318925,37;9,999<52622989/:7220#3$247,',*1'##,1,#5 +853_266_1092 77 * 0 0 * * 0 0 GAGCCGGAACGAGACAACCCGTTCTTAACATCCACCACGCGTGGGCGACG ;)2))/8%'10:712<67<3(39</68/5)6&')/170&49)6)//,)&& +853_266_697 181 chrM 1002 0 * = 1002 0 CAAGTCCACTTATATATGCGCATCGGGTTTTTGGTGGAAGGTTGTCATGT ::<;9796:::;9;;;<4>=2=;<;?=>?=;==?><6;:<:<>=@>;<=? +853_266_697 89 chrM 1002 37 49M = 1002 0 AAGTCGTAACAAGGTAAGTATACCGGAAGGTGTACTTGGATAACCAAAG ]]]SQVY]]\]Y[ZY][]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]# XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_279_1056 141 * 0 0 * * 0 0 TGGAGGGTACGATTAGAAGAGGAGGCGGTACAAATAGACAATTCCTCACT =<;<<=;><:>;=<<=>=:<<>=;<;=;<==8<87<7@8=<9<9;:1:3: +853_279_1056 77 * 0 0 * * 0 0 TGTGCTCTTCCGTCATAAGAGAACCTTAAGCTATCACGGACACAGCGCCG :;76;:=;:<7::;<<<3<76;:<9=<5;87=3<=5@3<7388771:;5< +853_279_1330 117 chrM 8561 0 * = 8561 0 CTTTTTCCTTCCCTTGCTTCGGTGAGCATGAGTTGCCTTCCGTTTTTTAT 7%,117%%154#2639#1#,5'+)23%($$1#$#1<$&>-<-'9)4).<+ +853_279_1330 153 chrM 8561 37 49M = 8561 0 AACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGTATTCACT JI[VXUU]]][\]]]WW]]]]\]]]]]]]]V]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:24T24 +853_292_158 141 * 0 0 * * 0 0 AACTTTTCTGGCATTTGAGCGCGTTTTGGAACTGACGAACAGATGCTCCT ===9<<;<=<<>:<:=<>::7=9<=:;9:>;;98=58>;>4=@;:,;=1= +853_292_158 77 * 0 0 * * 0 0 AATGTGCGTTTAAATATTCGGTCTTGGATGCTGATCAGCTAAAACGTATG ;=;;9;>>89=><94<;>9:;:896;;<8;3<<177=:5<6=:73<:9'9 +853_292_700 117 chrM 2055 0 * = 2055 0 CCCCACCACACCAGCCCCCCAAGCTTATACCCCGTACTCTCCTCATTACC 5.&/,#/++%):4'*/66:/.<6:82<6715=74+&>;<8:;>;=9<;9= +853_292_700 153 chrM 2055 25 49M = 2055 0 CACTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTTT U[XVKS\MRZS\]ZTXZX]WT[[]]]ZUUT]]]]WVZ]]]]]]\ZUU\& XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9C39 +853_33_1583 141 * 0 0 * * 0 0 CCCGCGCTCCCGATAATATAATCACCGAAACACGAAGACCAACAGGCCCA ),+&#,)',$##2$),%2'+#$)2),#$(+#+##&*%(-%1%#(##$$2, +853_33_1583 77 * 0 0 * * 0 0 TATGTATTTCGGTACCGCACAGANCACTCCAACCCGATAGCGTCAAGTCC /&2%,)+,+:&#:;,5*)8/%19!,%*1/%;#<952%:27#%%&4.,#-1 +853_33_1649 117 chrM 7331 0 * = 7331 0 TCACCTAATCTGCATGCAGCTCTGTCNTCATGTAGGAGTTAGAACGAAGC %1.)#$$1%%$)#)$&);=1968:42!:8<:78;888<6688=<<9<:9< +853_33_1649 153 chrM 7331 37 49M = 7331 0 TCACAGTCAAAACAATAGGCCACCAATGATACTGAAGTTACGAGTATAC XNT[[[YTQXUVKHX[]ZMOZ]SV]X]\Y[\ZVRTZ]][Y]]VNQUWSU XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:37C11 +853_34_1182 141 * 0 0 * * 0 0 GGGAACATTATACGGCTTTCGCCCCCTAGACCGCACTGTGTTGGGCCGTT >>>:9<<>><;58987;::9718859:2;75'3%(720&14%6(,51-&& +853_34_1182 77 * 0 0 * * 0 0 GTTAAGGGTGTTAGGGAACCCTANAAAGCCCGGGTTTCGTGGGGGCGGGC ;7;5*982;:/;,46::69<4<(!4295.6144&::<4*.-+%$#.#,(# +853_34_1358 117 chrM 7792 0 * = 7792 0 CGCCTCGAATATTGCCCTCAGATCAANACTGTTGACCCTCGGGCCAGGCC 9/8<9;6:<8=,>=<<;=<<9:><>:!9;@=:>?<=>><=>>?<=;??<< +853_34_1358 153 chrM 7792 37 49M = 7792 0 CTCCCTAGTGATATGCCACAGTTGGATACATCAACATGATTTATTAATA MV]YU]YXXTZ]ZY\]]]][]]]]]]]]][[]]][WX][Z]]]]]][[] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_35_596 133 chrM 477 0 * = 477 0 GGCTCCTATTTTATTACGTGTCCTTCTCAAACTGACAGCGCAATGCTAAG >978>8=9;>;:2>;;85=3;::=;::7:8:68)<5;859>?<>:<6<58 +853_35_596 73 chrM 477 25 49M = 477 0 CGATAGCTAAGACCCAAACTGGAATTAGATACCCCACTATGCTTAGCCC !SSNPYYYUQPS\VSSRPPZ[Z!!NXX\VXLL]]XUMKXYRTRKLV\Y! XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:22G26 +853_35_669 141 * 0 0 * * 0 0 TTCTTATAAAACCGCTTACCCCCTAGGTCCGAACATCTTGCAGGGTCTTG ,)&#<&38':&)-2/*4-'*+,5:0(3(+.+&,)9,&%1%*'(+.+-&&' +853_35_669 77 * 0 0 * * 0 0 TTGTGCTGTCACGGCAAGGCGGGNGAGTTGGTGCGGCTACTCTCATCTGG #4(,,&5,'-2(&5'10&)&-&3!,)+.*9&););:,8)7&3<&,/1:)& +853_365_1447 117 chrM 5643 0 * = 5643 0 ACCATTGGATTAGGCAGCCGTGGGGCATACTCATACGGTCTGACAACCAT $###$#$#(##&$$277:3079<60;993;8;5+97=7)9:;:(7<6 +853_365_1447 153 chrM 5643 37 49M = 5643 0 TCCCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTA NJUSYMK[RT[XXTY\ZZOT]]]XX\Z[XY]]]]]]]]]]]]]]]\]][ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0C48 +853_365_890 141 * 0 0 * * 0 0 AGAAGTCCGGGCGTAGTGTATCCGAGGGGCAAAAACTCTAACAACGGACT =9?=>7:9;A=9==??:<8?<=9@6<:>>8<?=>:=6:=<?8;<398:8) +853_365_890 77 * 0 0 * * 0 0 TGTGGGGGGGGAAGGGCGTCCGGCTAACGTCTCGGCGGGTGCGGGGGGGG <:7:=<;;;<9==><<;9<>:;>>;:;7<;<68(-#6+1&5,(4'2'.*2 +853_368_1718 133 chrM 1149 0 * = 1149 0 CTCCCCTCTCAGCTTGATTCCAAACGCCGGGATCTAAGGGTAATGTTCCG ;;A>A>?A;@@<><9A;6:?A:=1><<A@6=5515A<>8397:@1<6<3: +853_368_1718 73 chrM 1149 37 49M = 1149 0 CCTTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGA (]Z\]SR]]]\Z]]]]]]]]]]]]]]][]]]]]]]V]]]WW]]]SO[[X XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_369_74 141 * 0 0 * * 0 0 GGGTTCAAGCATGGGAAGTGGACCACAGCTCCCGACGGTCCACACCATCA =9756::884:54:791:47358965758589965&:94,&969;(5143 +853_369_74 77 * 0 0 * * 0 0 AGCCACGGATCAGAGGGGGAACGATGGTATAGGAAGGGATAAGTCGGGGA 7:9875:8:7<69;78.$2/9&)6%0-$5)96&879'$8,&(/))6*2&( +853_375_367 141 * 0 0 * * 0 0 GTTTTTTGGCGCGAGGTTTGCGCAGAAGGGCAAATTCCGGCAGCGTCGCG 5&')&(9<1,=?>:+,)6)&7,&(05/)1,',(0'&),&(6/7,,5,,44 +853_375_367 77 * 0 0 * * 0 0 CCGATTGTCTTTCTGAGCGCACCGAATCAAGGTATCTACTAGCATAGCAT '+);,18&&&''),2&))4,%/1&5.1+-'/,'-1()))&'*)'+)&/&) +853_375_856 137 chrM 883 37 49M = 883 0 AGAATAGAGAGCTTAATTGAATCAGGCCATGAAGCGCGCACACACCGCC ]]]]]]]]]]]Z]]]]]]]]]]]]]]]]]ZTV]]]]]]]\[]]]][]UQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_375_856 69 chrM 883 0 * = 883 0 GTTTACTTGAGTACATCCTCAAGACTGTCTTATGCCGAGGCTGCCTTTGA 8<;;>??83=>;63:@:?9=@<=>8@:?5?>8=1?;98;9<>4&40&2(% +853_381_1334 181 chrM 556 0 * = 556 0 CCCCATCATACCACATAACACCACCAAGGCTCAAGGTGTCTTAATACCCA *%-#&2+,%'%#,&%&.%7;';=?>%=<?>68:?@,;=?>%)4@>=@ +853_381_1334 89 chrM 556 37 49M = 556 0 ATTCGCCAGAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTTGGCG WLNHN\]]]]]]]]]]]]]]OJ]]]]]]]]]]]]]]]]\]]Z]]]]]]' XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_381_1648 141 * 0 0 * * 0 0 AGAAACGATCACAAATAACCCAAGTCTCGCCAAGAGAGCTTGATCCGAGA 8:9:;<;::::;65&:178(:8:517:35$3385)958.$<578%7:7.) +853_381_1648 77 * 0 0 * * 0 0 TTGCAGACTAGTTTCCAGGTATATTTTTCAAAGCCTTATTTTCTTTTTTT 986+0<95:8;(>5<<)58?,4)8;<5&,9/),()35)-3&7(&832$&/ +853_383_1666 141 * 0 0 * * 0 0 AACCACTGAGTACGTAGGCGGTGCAACCGAACCCCGAGTATTACCTACTG 18$+&,#./,8#8('./99#4(58);.22,;,2,%6,%)(,.,*957)(' +853_383_1666 77 * 0 0 * * 0 0 AGCGTCTTACAGACCCAACTTGAAGCTTGCAGGAAGGGGCAAACCAAACA ,,('6:.6-&7,(=15&%&<&&1(/16',.(1&&8($$&&+&)76,5815 +853_383_962 181 chrM 865 0 * = 865 0 GGCCAATTATTGCAATGGTATGTTGTGGGGCTGGGGAGGTTGAATCTCTG 5*;3<8)659?)@>?:(99>:7==<?5?;A=:<2>A<;:==<=:>;9??@ +853_383_962 89 chrM 865 25 49M = 865 0 GGATTTAGTAGTAAATTAAGAATAGAGAGCTTAATTGAATCAGGCCATG O\]SGKS[[MJ]]Z10[]WHG]]WQT]]]HI\\YBDWTW]XU\]]VY]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:8C40 +853_389_1983 141 * 0 0 * * 0 0 TGGAGCTACACCATCCCCTTAGGAGGGGGAAAACGTGGGGTGACGTGGCG 715;6741498/6459/6448/6573'569<98845/6:9$),4%.560( +853_389_1983 77 * 0 0 * * 0 0 TACCGTCTTTCGATTGACCGGTCGGTCGGGGGCCGGGTGTCCGGTTCCGG ,&9):88.&'&&/.&4&%4(6#$4531,)66,.2-51#'2/&'5845,8. +853_390_660 137 chrM 1251 37 4M1D45M = 1251 0 GTGCTTAAAAGTACTAAACAGCAAAGCTTACCCCTTTTACCTTTTGCAT ]]]!%\W]]Z]]]]]YW][ZY]]]]WU\]]]\]Y\]]\V]23]]]HFRS XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:1 XG:i:1 MD:Z:0A3^A45 +853_390_660 69 chrM 1251 0 * = 1251 0 CTAAGGCAACGTATTGGTCGCCTTATGGTAATGGTACGTATAATTAGGCT >8A==;<<<>;;A98<;:<=>;9;=;;;;>;8<;;@5;:81=:894;:), +853_392_1916 141 * 0 0 * * 0 0 GATGCATATCCTGCAAAGCACCAAGGATGGAAATTTGCGCTAAATAAGCC @;@A?>A;?@A>@@<=9A>??=<;A@9>A?=:;?=>;?<<?;<962&6): +853_392_1916 77 * 0 0 * * 0 0 GCGCCGGGGTACAGTGCAAGCGCGAACGAGACGAATTTGGGGAGGGCACT :<=<<<>>;>9<28A;<:*;:=95889<.:8;>34;6)%+6;05&::1+1 +853_393_183 137 chrM 660 37 49M = 660 0 CCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTTCAGCAAAC ]ZZ]\[]]]]]]]YZ][[[]]Y]]]]]]]]][]XV]]SGT\ULSXY]Z[ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_393_183 69 chrM 660 0 * = 660 0 TCAGGATGGCCGTAATAATGGTGGCGTACACGCGCAAATTCCTTATGCGG =>;<<=*;4-;+9':>$427:&972<)71=;*793<1<1:;:7/9=)7/; +853_397_1746 181 chrM 9541 0 * = 9541 0 GTCGTATTCCTTCCTTGCAGATATGTCATACATCCCTGCAATCAGACGAG ,5,+2.4.7/><1:777)5;78/97?:0<582/9<880;8;98;:7987? +853_397_1746 89 chrM 9541 25 49M = 9541 0 CGCTACTCGTACTCATCGCATTCTGATTACCACAACTAAACATCTATGC DF8=*%8:ORJJNQOMD>LLOWUYMGGIQFNYV]SKPU]]VJGMFFVPJ XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:26C22 +853_398_593 141 * 0 0 * * 0 0 GACCCGTGGGCTCCACTGGTCAACGCCGTCCTATATGGCGGACTAGTCCT (,1&31,+//,&1?0,)(>91),,7(/0(1(3=/1>/)&83:5336:3-3 +853_398_593 77 * 0 0 * * 0 0 AATTTAACGTATGCGGTTTTCTCTTCTCAATCCTCACACCGGTAAGAACA (=714-?,:<,91)717878<7/9396=51,<<=,)/;8=5,:/8;7813 +853_423_1430 133 chrM 8093 0 * = 8093 0 CGGAGAACCCACCCGAGAGACATAGGGGCGAGATTCACCTGCTTTTTAGG >>5:<8<A<=:<=@<=5?:/=:8;7:=9<<87:<897:7891.=%;8/7; +853_423_1430 73 chrM 8093 37 49M = 8093 0 CTCAATCCAACAATGGCTAGTCCAACTTACATCAAAACAAATAATAGCT W]]]]]]]]]]]]]]]]]][\]]]]]]]]\Z]]]YW]]TKTO>=D?KXK XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:6T42 +853_424_115 141 * 0 0 * * 0 0 TGTTGACTAGCCGCAAGCTCCCTGGACAGAGGCAGTCTAAGCGGTCCGTT ;<<8<<>=9<=?:8:?:?8:A>;3;<=<8;<9?69>99;:;;77;:9/,; +853_424_115 77 * 0 0 * * 0 0 CCCGATACAGACCATGCGAATCGAGACGGGCTGTCTCCAGTCCAACCCGG 6>8:8<;>7?;;<,7>>;;8:<=16;:789549$%&6)'040$('%0''2 +853_439_1980 141 * 0 0 * * 0 0 TGGAGCGATTTAGACCGTATTTTAGTCTCCGCCGATAATAAGAGCAATCT 952;8:98452>4=9;:0=3)6/76-666=777+<4::&86.;'7;:+5' +853_439_1980 77 * 0 0 * * 0 0 CAATCAGTTTATGCAAGCTAAATCCCCGAGACTGAGAACGAAACTCTCGG ,<='0/71(/:.;2<<9:5>7?2<8<=9987;51?*=>:(7;<,()&:6/ +853_440_379 117 chrM 8797 0 * = 8797 0 TCCGTCGCGTCTCACGCCTCAGGAGCACTTTGGGACGCCGCTATTTGTGT 6<=8:7:366/<70;+5:9;7:;:<:899=89<8;:79><3:<8:5<8=9 +853_440_379 153 chrM 8797 37 49M = 8797 0 CCTTACCATATATCAATGATGGCGAGACATCATCCGAGAAAGCACATTC OOR\KGMS]SU]]ZY]YOQJQ]]\]]]]]]]]]\]]]]]]]]]]W[][X XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:21A27 +853_443_1353 141 * 0 0 * * 0 0 GACGGAGGAGGGTAGTGCGGGGGGCGGGCGTGGGGCTTGAGAACGGCTCA 95:19@9979:<4,82>02:3;5.46:65:5<95<7:;7;:>9*;:<:82 +853_443_1353 77 * 0 0 * * 0 0 AGCCGAAACGATTGTCGTGTAAAGGCGTCCGCCGGGTCAGATCGAAACCG 921/5>7972<889;:;9:3?>5;/95<509=7.878/4/;:.28;9/3( +853_443_704 181 chrM 8985 0 * = 8985 0 TGTTCCTGTAGTATATCACTTTTTTGCCCAGGACGGTGAGACACATGAAG 7:/><:;,?:::>;>=;:>>><9@>;>8A;=?@A@=?=?<=>AA>>AA<@ +853_443_704 89 chrM 8985 37 49M = 8985 0 GCTGCTGACCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCC K[ZHA@@A!.]]\]][]]]]]]]]]]XW]]]YT\]]ZX]]]]]]]]XY] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_458_262 141 * 0 0 * * 0 0 AAGTCATCTTTCCGGGGAACCCCCCGGACCTTCCTTCTCCCAACCAAAAA >>;>=;<4><=>5;=;>2=>:>1;<><'::8>(=:?5%<=9;29<<=-0< +853_458_262 77 * 0 0 * * 0 0 TTACCTGCCTCTCCCTCGCCACTTGGATCGCCGGCTGACTCTACATTACA <;:=7:;;<8<=8;=<</<9?<9::<<:;9;;84:91#2&%,-($&&%*% +853_458_615 137 chrM 5320 37 49M = 5320 0 TCTTTAGATTTACAGTCTAATGCTTACTCAGCCATCTTACCTATGTTCA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\\]]Z]]]YY]]Y][V XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_458_615 69 chrM 5320 0 * = 5320 0 TTGCTGTTACTGAAGTCATACCCTAAAGCTTAGTATGCGCGTGTGTCAAG 97899::;:<<:;;;<::9;;77:;;/8:=<6;86;34;;8695;:+5:< +853_47_795 133 chrM 649 0 * = 649 0 CGGAAGGAGCGAATACTGAACCAACACAGGTTAACTAGGAAGAAAGTGGA >?@;;?>=A@A9:>;:>=<;=>::88<;=8=<:95>08=5.(364,)1,) +853_47_795 73 chrM 649 25 49M = 649 0 CCCCGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCAT ]]\]]]]]X]]YY]]KL]]]NO][X07]]VIRZ]Z"0]]]]RKR]KF\V XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_47_831 141 * 0 0 * * 0 0 TAAAATCTCGGATGGTTGCCTTGAACAAAAAGACAGCCCCGTCAAGGGAA 5A,&5,))%(()&,13(.9<2++8,>99*(%184,=/&5+)6/)0.&)64 +853_47_831 77 * 0 0 * * 0 0 TGGATACACGTAACAGAGGACCGGGCAGACTACTCGGGGGCCGTCGGTGG .)/'0(,&#*#'#)#(#(#*(#'%%1.3#$-2%$&/#$(#'%'%(##%+, +853_489_1193 117 chrM 5045 0 * = 5045 0 CCGGGTATAATCCATAATGGCGTTTTCCACTCTGCAAATACAGTAAACAG 85@06;<>)=55>29<;?)=>:<:===>5=>=>,><=?2=?<>>>=>=<= +853_489_1193 153 chrM 5045 25 49M = 5045 0 GCATACTAAGGACTGCAAGACTCTATCTCACATCAATTGAACGCAAATC RMO]UZ]]]]]\\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:16G32 +853_489_665 141 * 0 0 * * 0 0 ACGAGGAGATTAAAAAAAATGGGGTTAGATTAGATAAGATGAGAGGAGAG =>?><@=A<@@<?>>=:=:=;24&&)00+&$(4:%%'(4-#+16#-'1.$ +853_489_665 77 * 0 0 * * 0 0 GAAGAACGAGGTTTAAGATAGCGAAACCGCGACACGGACGGTAGAGTGGC ?::=-->4%&22=8)3<1;7$//6#)=(:%%<2(*,4,;7'92832:$9) +853_557_1176 117 chrM 12324 0 * = 12324 0 GTGGACGGTGACGGTAACCCCCAGCCTTCCCAGGAAGCATATAGTGGGGG ;,<<=95:3==7<9@?9;9><<?:=A5@>=?6;<@=8><>:9:>79>@;> +853_557_1176 153 chrM 12324 37 49M = 12324 0 GCTTCATCATAGCCATAGCCTGATTCCTATTCAACACCAACACATGAGA []]]]]]]]]]]][[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:10G38 +853_557_600 141 * 0 0 * * 0 0 ACACGCCGCAAGTCACAACGAGAAGGCTAGGGACAAAAGACGGAGCAAAG 7-0'%()1&'&/65'1'/+,.*&&*17165:+0#-+'.&+''$-,$-&'# +853_557_600 77 * 0 0 * * 0 0 TTGCCCCAAGATCGATCTTGTCCCGAAAACGTAAAGGGCCCGGTGCGAGA &+&))(51(,1&&:'7:&)=.8),/5034&.&31&0.&-/$3'&)&1&1, +853_558_1569 141 * 0 0 * * 0 0 TGGGGGGAATGCGTAAAGGAGGACCATGCCTCTGAGAAACACGCGCGAGA &&(?(?(8><;;;;<=;<7<;;8<:9;<88=<:<=::?8,6658/:,181 +853_558_1569 77 * 0 0 * * 0 0 GCTACACACCCCCGAGCGGCCGGTGTAGTCGACGTGCGGAACGGTCGTAA (?16:=57:=779:995@=9?<?:>3<??=?339@?@;<@3?:8>><53? +853_558_962 181 chrM 2448 0 * = 2448 0 CTCCCCCCTCGGGGCCCTAACCTGCCGACCTCGCCCTATCGTTTACTCCT .)(0908:,ᭊ$979'%<6.*772<<;>@=?=>;<>?=>>>==>?> +853_558_962 89 chrM 2448 37 49M = 2448 0 ATGTTGGATCAAGACATCCTAATGGTGCAACCGCTATTAAGGGTTCGTT \UV]]]]TS]]]XZ]]XFN]]]\]]]]]]]]]]]]]]\]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_563_1263 133 chrM 8090 0 * = 8090 0 CTCGTACTGCGTAATATACAACCCCACGTCCGTTTGGCTTAACAGGAGCT @A>=?A@><?=A<==@A==?>>=;==>:1<<:?=<=<;=:?=<&:3<3): +853_563_1263 73 chrM 8090 37 49M = 8090 0 AATCTCAATCCAACAATGGCTAGTCCAACTTACATCAAAACAAATAATA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\X\][VYZSFM\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:9T39 +853_563_1776 141 * 0 0 * * 0 0 GGTCCTGCGGGCGGTTCCCAATTTCATCTGCCCGAACATAATAGGTAACC @=?=A>A@A>A?>@>>A@>A>?>1@>>>5@?@@8>?@&8><>97(:9:5) +853_563_1776 77 * 0 0 * * 0 0 ACCTTGGACCCCTCCGGCAGCATCGGACAAGACCGCTGGGTGGTCTAGGG =A><?@A:AAA@<>AA9@==?96AA=69;<>8A3>;86&?:;6&<>7??< +853_56_1228 181 chrM 8643 0 * = 8643 0 CCCTGCGCCGAGCCGTCCCCCCCCCGACTGAACTCAGCAGATACTCGCAG (-5&(2)5(/&-:%&4&9%&-.1266:=:?<<?>>;??<:==<:?=?>;@ +853_56_1228 89 chrM 8643 37 49M = 8643 0 TAATGACCCACCAAACCCACGCCTACCACATAGTAAACCCCAGCCCATG Y[]MKVY]]]]QT]]]YY]]]]Y]PN]]]]X]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:22T26 +853_56_1324 141 * 0 0 * * 0 0 ACCATGTATGGAAAAAAAGAGTAGAGGAGGGAAACAATGAAAAACGGACC /6+58//.61366638/)&988).5::15578427=88&0:>;59:(6;< +853_56_1324 77 * 0 0 * * 0 0 GGGCTTTAACGCGTCGGCACGAGGTAAGTGGAGTGGCGATGGCACGATTC 5,(,)5+)57+94*,*3-#*4,2&2$2'(,2)-)22/)$23/1*)24'%$ +853_584_1986 141 * 0 0 * * 0 0 ATGCCACCGCCTTACTATCTTTTTTGCTGACATCACGCCGTCTCTTGGTG ,#$)*)(($3,))$&#,(&#*))&$##&#(%+&'+$,,$2$&(#&#+,#$ +853_584_1986 77 * 0 0 * * 0 0 ATAGCTTAACCGAATGCTTTAATAAATTTGCTGTTCTGAGGGCGTTACAC ,:)155*-9#7,;,)'232.:1(4,7#$3#97$%$,''+$,2(##,#%#( +853_585_1153 141 * 0 0 * * 0 0 AAGACCAACGTAAATTATCCATTCGTACGATGCCCTGGGCATTGCATTCC <>689<?9>59781>9956245:44?6,16=466;77615206+=12$#, +853_585_1153 77 * 0 0 * * 0 0 GCTCACGCCAGTACCCCAAAGGTCAAGCCTTTCAGATTCCGGCCTGGTTC 87?><89<==9>868=95:49<>7;:96<,:=;-1::::64;58/9;;)1 +853_585_542 129 chrM 580 37 49M = 1916 1336 AGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAG #(]]]]]]]]]]]]]]]]]]]]]]]]Y]]]]]]]]]]VV]]]Z]]YR\] XT:A:U CM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_585_542 65 chrM 1916 37 49M = 580 -1336 AAAAGGAACTCGGCAAACACAAACCCCGCCTGTTTACCAAAAACATCAC ]]]]][]]][]]]]]]]]]]]]]]]]]YS[]]]\]]\MS]]]\TW\YTO XT:A:U CM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_611_1451 137 chrM 593 25 49M = 593 0 AAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAGCCTGTTCCGTAAT !S]]][TGDQ]WKRZWVRPLPYX[ZWTENZWXEFUX]PFRY[UUVS\QD XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:44A4 +853_611_1451 69 chrM 593 0 * = 593 0 TAATAGCAGCATTCAACTTTCCTGACCTTTACTACTACCGAACCTATGGG 28#'%)5/,)46%-#28,4,/;00,'6,/'-;4%(#9,###:++'.9*## +853_611_981 141 * 0 0 * * 0 0 GCACGGCAAGCGGTACGGGATACGTGAGGCGCGGTAAGCAAACCCGATCC ;=9===@::A><;<6><=;:@8;;==8<?:<<==<<3=<&>55=9;38=; +853_611_981 77 * 0 0 * * 0 0 GACCTGAGCAGCAGTCGCCTGGAGCAAGCCGGCCGATATAAATCGATGCT 85275/655287&4<7<5889<176837797:835.6&44427/'48$71 +853_626_1431 141 * 0 0 * * 0 0 ATGTAGGTCCCTGACGGCCCCACGGAGGAACCTTAGCTAGGCCAACAGAA >5<:5897:<;4==:;7>;9;<979>89?<7;;:<9:6<49;8644.1+$ +853_626_1431 77 * 0 0 * * 0 0 TGGGTCAATGCCCTATATGACATTAGGTTCGCGGTCGGTAACGAACAGCA 11-/8<:967:;959<<:5:<21781187057585;;*6-5$%8,2&%9$ +853_626_841 181 chrM 10675 0 * = 10675 0 CCCACCCGCCGTTCTAGGACGGCCACATTTTTATTAAGTCAGCCGGGATC ,)4,(85:>=?6@6>=7<=<>;>=<;?=A=<>>AA>@>A<>@?@A@?@AA +853_626_841 89 chrM 10675 25 49M = 10675 0 CCTCCCACTCTTAGTCGCACTAATCTCTATCCAAAACCTAACAGGCTCA R]]]XZ]]]]RLZ]]]]]]]\T]]]]]]]][]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:15T33 +853_628_1041 141 * 0 0 * * 0 0 CTATCGCTGATTTCACAGGAATCGGTCTTATAAGTTTGACCCCTTTTTTT <9)9<7839<:>/<<;>3'A9<36=<9$#9<8((<=8'&;97'7>;#2(8 +853_628_1041 77 * 0 0 * * 0 0 TGAGCAAGACCCGTAATCTACAACGACCAGCGGTTATGACAATGTATAGC 978:5,7295,/889'529//,,:55227($128:'9*83,4&29&,%57 +853_628_1976 117 chrM 620 0 * = 620 0 CGGACCCAGCAGTGTGAATCTGGGTAATCGCGCTGAGTGACAGCTCGGAA -&-,&&$9/84359:0;=1<7:::8?>.<9<:<:8A869=?=<;9=:<@< +853_628_1976 153 chrM 620 37 49M = 620 0 CTAGAGGAGCCTGTTCCGTAATCGATAAACCCCGATAAACCCCACCATC ON]][RQ]][W\]]]RR]]]YZ]\\]Z]]]]Z]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:17A31 +853_630_1363 137 chrM 2399 37 49M = 2399 0 CGCAATCCTATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCG ]]]]]]]]]]]]]]]]]]]]]]]]]\]]]*,[]]IEZ]]]V[]]/1\SH XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_630_1363 69 chrM 2399 0 * = 2399 0 ATAACAAAAGATTGAGGCCCATATTAGGTATTACCGCAAAAGGTGAGACG A@A=AAAA>A?@><?>@AAA8=:A@:?>A89:@>?=<?=@8A;;=59@8A +853_630_585 141 * 0 0 * * 0 0 GGCTGGACTATGCCGATGCGCGGGCACGGAGGGATCCGGGACCGGGAGGA &#$%#)%&#%#$$&(.##$##)-$&%%##&&.#&#$&-$#&'+'#$,,$& +853_630_585 77 * 0 0 * * 0 0 TAGTGTCTTGGTTCGTGTAGAAGTGCCTGGCTTAGCTAAATCGAATTGCT 15/,/(/))=&,)>,):(>:<=/,)/3>:,,49/(6)/;/',.11.+9'4 +853_648_1618 141 * 0 0 * * 0 0 TTGATCCTATGCGGACGATTCCCGCGCTTCTGCAGTTGAGTTTTTTAAAA 1/(,/3<)+7%'/,%'&1)'09';/5.)%,)1&*111&+&5&0$4%$581 +853_648_1618 77 * 0 0 * * 0 0 GAAAAGGGGCAGAATTTCGAGGGGAGTTAGGGCACAATCCCGCTAGCAGC &?,//&6(=77)):,)7.)933<)4%=:-8,831885//@3@:154',&3 +853_649_292 117 chrM 1156 0 * = 1156 0 GGAATTCCTGGAGAGGGGGGTTGGGGGGTTGAGAAAAAGGGGGGTTGGGT ::4572;408<;82=:;?::5;9=:<::98=<57:<;;>?;;=>:;;>9: +853_649_292 153 chrM 1156 37 49M = 1156 0 CACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGATAGAAAT VV]XR]\]]Z]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_669_1548 141 * 0 0 * * 0 0 TCGGGGACCGCCGCGCTCTGGCAGAGAGCTCCAGGGCGGGTGCCGGCAGG 8<977;>:=:;=:9><:9<;795<65>2>;;99=9/<4<8113/78,((& +853_669_1548 77 * 0 0 * * 0 0 TTAGCTAGACATTAAACCATCCCTCTCATCTCCGGTTAACCCCGCCAGTT =;=<<=<<;=61:977/7;:96::<8.7<8;39:;976;;63)9;1+2:1 +853_669_616 181 chrM 8554 0 * = 8554 0 GCCGAACATGCATGCAGGTGGTCAACTGTTCCTGTAGTATATCACTTTTG 3;>8==8=;>:A?:>A<@9>A=?=@<9<?>>A?@@>@@A>@<@>>=><AA +853_669_616 89 chrM 8554 37 49M = 8554 0 TTCTACTAACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGT YKKZ][YXT[\]]XZZYSM]]TNZ]WUXZ]]Z[]]]\TY]]][Z]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:31T17 +853_678_1204 141 * 0 0 * * 0 0 CTTAAGAGAAAACCTGCTAGCAAACAAAAATAGGGGGGGAACAGAACGAG 737,88957/39486691$92<:77<:1060:9),4&/)),)(').4+,' +853_678_1204 77 * 0 0 * * 0 0 GCAACCCGTACAAGTACAAGTACAAGTACAAGAACAAGAACAAGTAAAAA )=1=89;35:6:=:6;9A<5361?>1/6/=<'/;,A=&,:&>=/(5&A7& +853_678_1908 137 chrM 14105 25 49M = 14105 0 ATGTCATCATTATTCCCACGTGGAATCTAACCACGACTAATGACATGAA ]]][]]URX]]]WV]]UO\]]]ZXTRYNQX]]WVPNTOVXWUSRDLWEN XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:37C11 +853_678_1908 69 chrM 14105 0 * = 14105 0 TAATAGGTCGATAACGTTAGAGACGTAAGAGGAAAGTAACTGCCGTCATG 8@?:57<:::?;=><=:<?:@=?>9=@=97?;>=7<7?:66<:;:9;=83 +853_718_1061 133 chrM 1329 0 * = 1329 0 TGTCGAATATGCATTAAATAAGACTTGGCCGACTTGAAAAGTGTTGGCTT >A><@?@>@=>>;=<>@===<?=;>@A<=9:>;>=6==8<89:5>8>>;< +853_718_1061 73 chrM 1329 25 49M = 1329 0 AGAGAACTTAAGCTAAGCACCCCGAAACCAGACGAGCTACCTACGAACA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]\Z]]]]]\V\]]X\ZUSU]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:43T5 +853_719_183 141 * 0 0 * * 0 0 TAGAGAGCACTCCAGGGGAAGGGCCCAGAATCAAATAACAACTAATAGAA 99387)&%.,./'%682&.53/$)*65-440/#%$1$##.&$##2#,%$, +853_719_183 77 * 0 0 * * 0 0 ATTTTAGTTTACCTTCTTGAGTTCTACCTTAAACTTTGACCTCCCACCCC )/31.$%5'/#)',4#)'+$&7%%,&)#&&#%($$$$$%###%$'.##)' +853_775_1932 133 chrM 5645 0 * = 5645 0 GTTTACGCGTCCCATTTAGCTTCGCCTATTTTCCCGTGGAGTGTCACCCA ((>3,,(/7&(A,3:5('4&<<?3;/,;8=()7@=:(3556(9:>/1317 +853_775_1932 73 chrM 5645 37 49M = 5645 0 CCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACT ]QHY]Z[TDO]]]][[]]]][]]]]]]]]]]]]]]]YY]\]]ZOKZUW] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_776_924 141 * 0 0 * * 0 0 GTGGGGTTAAATAGTAGAAGCGCGGACAGGTCCACGTGGAGCGCGAAGAA 88;9855?888?<.;=:54875'67+1#9661#474.5374:2*%88 +853_776_924 77 * 0 0 * * 0 0 GGATTGTTACGTGCGCCCTATACTGGAACTGACCAGTCATTGACTGGAGA -212<+87/3582?/4731,<2(A:956/<3148*:7/28069392;:7/ +853_7_132 141 * 0 0 * * 0 0 NNGNNNGCNGNGAANGCNTANCNCNNTANNANNNGCCGNGAGNGNANGGN !!&!!!5#!)!)&+!2&!',!&!'!!1)!!1!!!4()$!/&,!'!'!0$! +853_7_132 77 * 0 0 * * 0 0 NNGGNGATGNNTGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!$(!,#&#!!&#!#!!#($!%$!#!!#&%#$(!#!#!!!!)(*+!!!,2 +853_7_141 141 * 0 0 * * 0 0 NNGNNNCTNCNCCGNGGNAANANANNAGNNGNNNGGGGNGAANGNGNGGN !!,!!!),!5!3)+!//!),!3!9!!&/!!+!!!**#)!.)(!(!(!43! +853_7_141 77 * 0 0 * * 0 0 NNGGNGCCGNNCANGNNGGCNAGNCNNGGACCGNANGNNNNAGGGNNNGG !!54!9518!!1&!5!!/31!)0!6!!)533/:!5!6!!!!)/<:!!!,7 +853_7_146 141 * 0 0 * * 0 0 NNCNNNCGNGNGCGNGANCCNGNCNNCGNNGNNNCTCCNGGTNCNTNGCN !!1!!!33!4!#15!7(!51!1!3!!.5!!5!!!/)/,!&-/!,!.!4,! +853_7_146 77 * 0 0 * * 0 0 NNCGNCACCNNGCNGNNGCTNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!10!/240!!0)!2!!#&'!'5!(!!(.-*$3!*!4!!!!+#(.!!!.( +853_7_269 141 * 0 0 * * 0 0 NNCNNNGCNGNGCGNAGNACNGNCNNGCNNTNNNGGCANCCTNGNTNTGN !!3!!!/.!+!*4,!42!)8!2!3!!62!!0!!!84;)!)7.!5!/!&%! +853_7_269 77 * 0 0 * * 0 0 NNCGNGGGGNNGGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!%&!('#%!!#*!#!!/##!&)!$!!'$',%,!%!2!!!!3,,*!!!,2 +853_7_321 141 * 0 0 * * 0 0 NNCNNNACNGNGAGNCANCCNANGNNGGNNGNNNATTGNCCCNGNANGGN !!$!!!&'!.!*##!6$!#1!+!#!!.+!!)!!!36(#!*5'!#!4!+(! +853_7_321 77 * 0 0 * * 0 0 NNGANGTGGNNGCNTNNGGGNCGNCNNCGAACGNTNANNNNGAAANNNGG !!+$!+21(!!*-!.!!)#1!8/!9!!6,3+%6!'!,!!!!2&6,!!!&2 +853_7_386 141 * 0 0 * * 0 0 NNGNNNTCNGNGCCNCCNTCNGNANNTCNNANNNGATANTCGNCNANGGN !!;!!!86!=!;9=!%5!58!<!2!!62!!&!!!&3:&!//8!*!7!5*! +853_7_386 77 * 0 0 * * 0 0 NNCGNGTAGNNGANGNNGTCNCGNANNGAAGTGNTNGNNNNAAAGNNNGG !!31!:7-%!!:,!-!!21,!77!)!!227:9:!2!;!!!!)',%!!!86 +853_7_405 141 * 0 0 * * 0 0 NNGNNNAANANAAGNTCNGTNANGNNTGNNTNNNCATGNCGANGNCNGGN !!=!!!;:!>!<8=!9<!:<!=!>!!;8!!;!!!;//1!&(&!/!'!*-! +853_7_405 77 * 0 0 * * 0 0 NNGCNAGGCNNTCNGNNAAANGTNGNNAGAAGGNANGNNNNATCTNNNCG !!<8!8;==!!;>!:!!7:7!7;!8!!7:>48=!2!=!!!!536*!!!;: +853_7_411 141 * 0 0 * * 0 0 NNCNNNAANCNAAGNAGNCGNCNGNNGGNNGNNNCAGANTCGNGNANGCN !!$!!!-#!#!*#+!,&!2*!#!#!!%'!!)!!!'$)$!/-#!#!'!,+! +853_7_411 77 * 0 0 * * 0 0 NNCANGAAANNTTNGNNAGGNAGNANNGAAGGGNGNANNNNAAAANNNAA !!,/!13;,!!&,!+!!2/%!*1!$!!%*)+#,!,!&!!!!'-'&!!!++ +853_7_445 141 * 0 0 * * 0 0 NNGNNNTTNANGTTNATNTCNANCNNCTNNGNNNAAGANGGGNGNGNGGN !!&!!!0%!#!,&'!,'!$$!&!,!!&)!!'!!!..*&!#,7!1!.!10! +853_7_445 77 * 0 0 * * 0 0 NNTANTGCANNACNCNNCGANCCNTNNTACGGGNCNGNNNNTGGGNNNGG !!&'!*+'#!!'%!&!!,%#!)%!(!!'##$&'!#!$!!!!$$#,!!!#$ +853_7_469 141 * 0 0 * * 0 0 NNCNNNCANTNTCTNTTNTTNANTNNAGNNCNNNGTTTNGTANGNTNTGN !!#!!!%%!$!))+!$,!*%!.!(!!.#!!#!!!#&##!##&!#!#!##! +853_7_469 77 * 0 0 * * 0 0 NNGGNACAGNNGANTNNGAANGCNANNAAGGAGNGNGNNNNAGATNNNAG !!##!*($&!!##!#!!%))!#1!%!!(,##$.!#!(!!!!##'#!!!&$ +853_7_53 141 * 0 0 * * 0 0 NNCNNNCGNTNAGTNGGNGGNGNGNNGGNNGNNNGGGGNGGGNGNGNGGN !!0!!!10!)!)0)!,-!##!%!%!!##!!'!!!%+&)!%$/!)!$!/(! +853_7_53 77 * 0 0 * * 0 0 NNAGNCCGANNGGNGNNGTANGGNTNNATTGCGNCNCNNNNGGGCNNNCG !!14!3.15!!47!4!!8+1!$9!(!!,..1)&!3!(!!!!1/9&!!!,3 +853_7_78 141 * 0 0 * * 0 0 NNGNNNAGNGNGTGNGGNCCNGNGNNCGNNCNNNGGGGNGGGNGNTNGGN !!#!!!5,!$!5&+!#8!)#!5!%!!3%!!'!!!$$8+!&)%!)!(!*#! +853_7_78 77 * 0 0 * * 0 0 NNCTNGGGGNNGGNGNNGGGNGGNGNNGGGGCGNGNGNNNNGGGGNNNGG !!##!###$!!##!&!!#$&!$&!&!!%&)'#'!$!#!!!!&)*(!!!&* +853_7_88 141 * 0 0 * * 0 0 NNTNNNGGNGNATGNCTNGGNGNCNNGTNNANNNGCTANCTGNCNGNTAN !!1!!!42!5!,25!24!77!4!3!!81!!,!!!5147!)/6!,!,!1&! +853_7_88 77 * 0 0 * * 0 0 NNGTNGGGCNNCTNGNNATTNTANCNNACAGGANCNGNNNNGGGGNNNGG !!61!5551!!13!4!!.,)!/,!3!!.)/17+!&!5!!!!-'0.!!!,5 +853_815_1179 141 * 0 0 * * 0 0 GCGGACTAGAGACGTCAACTAGGAGTAGCCGAGTTCAAAAGGGCAAAGGA <'#37,/*;1;7,;45-738,(/3,+.%21:/&93('(+7#*(,8(*(&/ +853_815_1179 77 * 0 0 * * 0 0 ATTCAATGGACTAAATCCGGGACCGAGGCGCGTCTGGCAGTCGACAGCTA 67827:>5597:=:<6<,224348025,71:879724,2(7/29)92222 +853_816_193 137 chrM 2616 37 49M = 2616 0 AGAAGCGCCCTCAAACTAATAGATGACATAATCTAAATCTAACTAATTT ]]]]]\]]]]]]]]]]]]]]]\\\]]Y]]]]]VY][X]]Z[NL[WMQT[ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_816_193 69 chrM 2616 0 * = 2616 0 GTGGTCTGAGTCAACCTGTAGATGTTTCGTGCACGATAACCCAGGGATTC ><><<;<@;9;>;=::>:==8<::=8>7<<:</=<8=@<?878>?<6?<6 +853_827_2017 181 chrM 5150 0 * = 5150 0 ATTTCGAATCGCACGCGCACACAGTTCGAGGATCCTCTTAAACGTTAGCG ++6=<9;<8<7935;5480<::;<;::8;8;7994=<8?:=;8;>::8?< +853_827_2017 89 chrM 5150 37 49M = 5150 0 TTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTTCT FCHRRSLJSMOW\\Y[]YZOIDI][\]]]]\Y[Z\]ZUUZ[Y\]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_828_1138 141 * 0 0 * * 0 0 GCACTATCGTGTGGCCCGATGTCCGGTCCTCCTCTCGGTTTTGGACCTGT &+&&)')$#,&,#&&')&%&'/&$$'#####&##%$$###&&##&$$### +853_828_1138 77 * 0 0 * * 0 0 TTAAAAGTCATGAGCGTACAACACGTGCCATCTGTCCTTAATACCTATCA &)&$&)&&&&)&&%&&&&)&'&&&%&%&&%%&#&&&&&&&&&&%$&&&#& +853_82_2023 181 chrM 1195 0 * = 1195 0 CTAGCTCTGTACGCGGCTTATGCGTCTCTTAGGCTCCCTAATTCTAATAC 75:5956654=71?9858;96;9>;;:?8:<=8=45762<?57<<>79;9 +853_82_2023 89 chrM 1195 37 49M = 1195 0 AGATAGAAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAACG XX]]VQXWSNT]]]WV]\Y]]]]]]]]]]]]W\]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_83_197 141 * 0 0 * * 0 0 CCGTCTCCCGCGCCGCAGAGACACTACTTCCTCGCCGCGGTGCGCCGGGC /9;58179583997;5591<26;797=55:995$)&$'#-$(&&'(*(%& +853_83_197 77 * 0 0 * * 0 0 GGCAGATGATATGGACTGAGTGGGGGGGGAGGGGGGGGGGGGGGGGGGGG 8;95;6:96698;6;89:3=%(-*$&(+$&#%.''+(.-%-/5.*.*4/5 +853_843_1357 133 chrM 13593 0 * = 13593 0 GTTTGCTAGAGTCGTATGTAGTCGTCGTTTCACGTGACCGGTCTACACCC >:AA8=?:??:?@>@?><>8<;<:>31=>:8(=8<74=,9;?5;724>48 +853_843_1357 73 chrM 13593 25 49M = 13593 0 TCCACGAGTAACCTCTAAAATTACCAAGACCCCAACAAGCAACGACCAA ]]]]]]]]]]]]]]]]]]]]]\]]]]]VU]]]XJQ]]\UYYXTOX]ZQN XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:45T3 +853_843_799 133 chrM 16042 0 * = 16042 0 CTACACCTGCGTATCGCCTCGAAAATGCTGTCACCTTAAGCACGTTTAGG @>>=A:AA=A9A>@4:=>:8:2?:@23;>;;9=1<=;=933'58>;9>:6 +853_843_799 73 chrM 16042 37 49M = 16042 0 GAAGCTGGACTTAAATTGAACGTTATTACTCCGCATCAGCAACCATAAG ]]]]]]]]]]]][\]]]VT]]]YZ]]]QR]]]]W]]]UV]]]OL]]TQT XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:27C21 +853_844_231 141 * 0 0 * * 0 0 GGGGGACAGGTGGAACTGGTAGACGGTACAAGGGAGAGCGCAGGGGATCA 4289*5)*(/(/+;=$/806&&*76&,.19&4754&2/9/92>3;)11:, +853_844_231 77 * 0 0 * * 0 0 TTAATTCTAGGTTTAAATGGAATTAAGATCCTGAGCCGGCCAAACCCGGG &&8151/>,/,/8,(?<=&('(?/;8&8))<?11=39%718,$,./9*89 +853_844_634 141 * 0 0 * * 0 0 TCGAAAGCTCAACATCATCCGGCAGGGCGTAAAACTGGTCGCCCATTGAA >A;887A=2@9>;.;<67,;?::2:<;9#?<97/7<944:;):&*>90,6 +853_844_634 77 * 0 0 * * 0 0 TCTATCCACCGAAGTCAGTGTCTGAAGTCTTAGACACGTTCGAAACCAAT 7#56860817:11777)66,9&>7%;188/87,9&5608#9.764682%0 +853_877_1974 141 * 0 0 * * 0 0 GCGTCCGCAAGGCGCGGAGCCTGAGAAAATTAGCCCGCGAGAATGACTAT 76187559,719324834789;;285501;<<65:<<:9;;99=<830+: +853_877_1974 77 * 0 0 * * 0 0 TTGCCGTGAGGCGATTGTACCAAGATAAAAACAAAATAACCTAAAAACAA *,*-4'#)74,',)(*##,#&#+#%##&#$'##%##)(#$%##$#(##'# +853_878_1093 137 chrM 2417 37 49M = 2417 0 TCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGATCAAGACATC OZ]]]Z]]YWI8J]]TJX]]N;K]]RAN]N;3@XZH9=NYH>T]UE!/X XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_878_1093 69 chrM 2417 0 * = 2417 0 GGTTGGAGCGGGATAGCAAATGAGGATCCTGTCACAATCTCCCACTCCGA @@/&3,(,,5533/161?@57/1,3>3<<8>53)65=1)735,1A<;:8@ +853_887_1933 181 chrM 11695 0 * = 11695 0 GGCGCCAAGCCGTCCGACGACACTTGCGATGTGGGGACAGAGGGTGTGAA ))%,&))3#=4:=;<=:>8<:9=;?@<=<<>?A==;9<:><<<7@>>?4< +853_887_1933 89 chrM 11695 25 49M = 11695 0 CAAACACGGCTCTCTCAAACTTTTAAAGGATAGGAGCTATCCGTTGGTC W\]]UJN][WZ\]]]OR]]]]]]]]]]]]]W[]]]TQZ[]JCQV\]]Y] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:6T42 +853_888_1016 141 * 0 0 * * 0 0 TGAAGACCGGGGGTCCTATGATCAACCCAACCATGAATTGTCACAGACCG &.+/)(-#'('&5#405$2220&,/03$0+)9$(#)4%%&&-,#&#),'# +853_888_1016 77 * 0 0 * * 0 0 TACGGGGGAAGGGCATCCCGACGTTCAGGGCTCGGCACCACCCCAGAGGA &(,,//6)))'<&/9&')/,,)(,&,&&9&<)/'3,),/&&)7:)(/),/ +853_943_830 141 * 0 0 * * 0 0 AACCTACTATGCTCATGCTGGAGAAGAAAAACACCGGTGCCATCAAACCA (>,5+''#1):,#>#10#%2:%$3&(4#.#..#*39(#':6,$'%))##4 +853_943_830 77 * 0 0 * * 0 0 TATTTTTGGAGTACCCTCCTGTACCAATAAACGTGGCCCCGCCGGGTGCA 61)5/6,34'20)%@#)#<%#$<)6+33&6&')4&0'0*(#'215.$'9/ +853_944_156 117 chrM 2054 0 * = 2054 0 TTCGATCAGGGTACGACTGTGGAATTTTGAGTACTGCGTCTGGGACATTG :<3><=.:><?19>99.;>;67:>==<=A=?;::>=8<??>>>A<<==;; +853_944_156 153 chrM 2054 25 49M = 2054 0 TCACTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTT PV]]\XV[]]]X[]]]]]]]]XW]]]]]]]]]]]]]]]]]]]]]\]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:10C38 +853_946_129 181 chrM 7799 0 * = 7799 0 ACGCCACGCAGCGTAACGGCAAGCGCGGGCTCAGCACGAGACCTTGCGCC '&($%,4().)8%.4::%$'492/(88.$0:<,&,=7/.,7,$',:;<:8 +853_946_129 89 chrM 7799 37 49M = 7799 0 GTGATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTC ORU\]]\\V[]]]]]SS]]]]]]]]]\]]]]]]]]]]]]]\Z]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_946_1345 141 * 0 0 * * 0 0 TGGACCCGAATCCAAGCAGCCTGCGAACAAGGTAGGCGCCTGGTTAGCCA ?A<:<<A:=<:@6<><@:=>1@=<==<4:>:=<:>985::685;:2689; +853_946_1345 77 * 0 0 * * 0 0 GCGCCCGCCGTCGGGCTGAAGAGGTCGGCCCCGACCGCCGTCACCACCAG 8386936:688649:8;80:8#,#/,#1#-3#,#)4)2#42)&&12'2%/ +853_967_1892 141 * 0 0 * * 0 0 TCGGGCAGATGGCGTCAATATCCTAATCCCGCGGAGCGGGCAGTACGGAT :>;<<<@==;<<<>;2-#8>87'9><*%=@271=A6//=;)7,;=1).:5 +853_967_1892 77 * 0 0 * * 0 0 TATAATAGGTAAGTTCTGCTCGGAACATATTTTACCCCATTCTGCCTACC 8;64;9:878<=<9;:8>5:;9<>:;>769&;1://6&8;):1890:471 +853_968_1657 117 chrM 1985 0 * = 1985 0 CATAACAACATTCGGTAAGGTTTGATTAAAGTCAGCTCGTTGTTGGAAAA &%%)&')##$*,#$#$(#####,&#*%&$+##36<6<<8;99<9<88::; +853_968_1657 153 chrM 1985 37 49M = 1985 0 GAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGGCCGCGGTATCCTA \TZ]Z]ZTY[[[]]]]Z\]]]]]]]]]]ZY]]]\Z]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_968_485 141 * 0 0 * * 0 0 GAATGGAGGCGTGCATTTGAAAACGAGGCCAGGAAACTTCAGTACAGGAA =<:@<;:>@AA;>A9?8===<=>9<4;=7:2==9;94?@>.,;&;,=<&0 +853_968_485 77 * 0 0 * * 0 0 CCCGGTCGTCCGTTTGCGGTAAACGGCAACACAAAAACCCCAACCTTACC <=?;>==@<;>;<=><<?:<=?>=;?<>>=:><>=>7;>>7;8<::8:>< +853_968_835 117 chrM 7621 0 * = 7621 0 GTGTCCGCGCCGGAGCCGATTAAGGATATTTTCCCGTATCCATGACTTAT -986=;>48<==:<==<5<<9>::<=>>8<;>;?>><>=@:>:?<:<;A6 +853_968_835 153 chrM 7621 25 49M = 7621 0 TACTACGGCCAATGCTCAGAGATCTGCGGATCAAACCACAGCTTTATAC ZLCP"!ATX[NN]]]RR]]]Y[]]]\]]]]SS]]]YZ]Y]USVY]UU]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:8T40 +853_985_1608 141 * 0 0 * * 0 0 CCTCGAGTAAGGAAGAGAGAAGGGTACGATTATAATCCTCCCAAAACGAG @798;<9::<9;<:=?9>8;=9:97?68?=;1<:58:3/97%2)%-)#&# +853_985_1608 77 * 0 0 * * 0 0 TGTAAGCTATTGATTATACGCCCAGATGGACAATCGACAGGAAGGGAGGG <:99:7<::<:>,<<;=:<97?5/:/;:2::::58<921;>:::<=19=< +853_985_616 181 chrM 231 0 * = 231 0 GGTGGGTTGATATCGCGTCACTTAGGGTGGTAAGGTATGGTATCACAACA )$)($$#1&,&,#)#1&6=3;<=?;568=:;>@868@@@4>=@>>8A?@= +853_985_616 89 chrM 231 37 49M = 231 0 CCCCACGGGACACAGCAGTGATAAAAATTAAGCTATGAACGAAAGCTCG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:45T3 +853_991_1890 133 chrM 3733 0 * = 3733 0 AGGGGGGCAAGTTCAGGTTAATATATAAGTTTAGCCCAAAAATTACCTTC >,>)&,(->>.32(<@>1&=)/:/)>/&+((>,;)3;&1>=;,%63=7:9 +853_991_1890 73 chrM 3733 25 49M = 3733 0 ATGTCTGACAAAAGAGTTACTTTGATAGAGTAAAACATAGAGGCTCAAA ][]RO]]TDABJVW]UU]XURWUR]]]]]SO][IHW1(NUSD!!H\6$: XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_992_1006 133 chrM 5367 0 * = 5367 0 CTGAATCAATGAGCCCACCACCACCCAAATGCTACCTACAGCAGACAGAG ###(#$#$0###1(###+,'##*##%#%##&##0####$&'#*%*'%#+# +853_992_1006 73 chrM 5367 37 49M = 5367 0 CATCAACCGCTGACTATTTTCAACTAACCACAAAGACATCGGCACTCTG ]]YT]]W\\U]YOT]]]]]]ZV][]]RT]][Z]][]][\ZUSYTRXQPY XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_992_1044 141 * 0 0 * * 0 0 ACAGAGGCCCACCTGCTCACTCGGACAGCCGCCCACGATGAGCACTGCTC :70.7143#46<257:>/,488938=96958:/75;29)715689/8(&+ +853_992_1044 77 * 0 0 * * 0 0 TGCGTCGTGCGCTACTCCGTATTCCCCGGTAGGGGAACCTCGTAGGACGG &/5-<)&(':4+<3838&&4&7'1-17&,/11044//$&,%8,%$4,-%# +853_993_143 141 * 0 0 * * 0 0 CGGGGCTCCAAGCTCCCCATCGAGAGACTGGGGTCCGTACACCAGACTCG ;759<65;<>97<::==@/8;6;6<:;85==1::;;:97<,9=937:79: +853_993_143 77 * 0 0 * * 0 0 CGGAACGAGGGAGTATAAGCATAGTCCCGCATCAATAGACCTATGGATTT <788::9:8:77>3,6;<768:?:39<=:611>9751:;8:55895(>;3 +853_996_1656 113 chrM 16037 25 49M = 1018 -15019 AAATTGAAGCTGGACTTAAATTGAACGTTATTACTCCGCATCAGCAACC YVP/1W[[\]YY\]\\]]]]ZT[]][[]]]]\]]]\Y[[ZWY\Y\]]]] XT:A:U CM:i:1 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:32C16 +853_996_1656 177 chrM 1018 37 49M = 16037 15019 AGTATACCGGAAGGTGTACTTGGATAACCAAAGTGTAGCTTAAACAAAG ]]]\]\]UQ]]][]]][]]]]]XW]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_996_488 141 * 0 0 * * 0 0 GCGTACCTGAACTTGGCCATTAAGAGCAGAGCCACCAGTGTCGCGGGGGC &-'*/*/8)$2(,.22&10&,))0/+,$38'(531,)2)'((%'6'(-1. +853_996_488 77 * 0 0 * * 0 0 TGCCCCGTCCACAAAACTCTAGACACACGCCGACCTTGGCAAAAGAAGAA .&'6,#*<(%'8('(,8.4'.1*9)81-0(*0$&2+-)5,0/,1*21#%* +853_997_740 141 * 0 0 * * 0 0 GTTATCGGGGGTTTTCGCAACATAGCTTTGGTAAGCATTTCTGCACCCCT (=('(,(,+<=3?<;::97<;::9<;8:4;<;9::=38:;?=;1<99087 +853_997_740 77 * 0 0 * * 0 0 GGGGGGAGATCGGTCGTCCTCGCGATTCGACGTAGGGAAGGAAACCGAAC 9&5;'.1')&(4&2&(,'))=&,,-.&+,&)(.,7/2)(4/-'95,4,<3
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bwa_wrapper_out6.sam Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,203 @@ +@SQ SN:chrX_part LN:37500 +@RG ID:474747 LB:lib-child-1-A PL:SOLID SM:child-1 DS:description DT:2011-03-14 PI:200 +@PG ID:bwa PN:bwa VN:0.5.9-r16 +427_12_390_F3 4 * 0 0 * * 0 0 AAGGGAGTGGTGCTGGTGGGAGGCAATTTGTCGGACCTGGGAAGCGAGTC BBB>=;@@A6<A;=>=A?>??@A58@B>9>>@?70?@<=>>@A9/5?=25 RG:Z:474747 +427_12_550_F3 4 * 0 0 * * 0 0 CGATCTCTGCAACTTCGTGCGCAGGCGATGGGGGGGAAAATGAACGGATA 8A=?<BA@=;?A;?><B?;:5@.<:7?9;6<A62<@;8<==@3:>;=339 RG:Z:474747 +427_12_941_F3 4 * 0 0 * * 0 0 GGGCCAAAGTAAACGCTAATCGAGGAGGACAAAGTAAGGAAGGCGCCTGT B@72=>?A:;<:?>?94B??;3A<?1@<3=<A?8>A6?>=>7A/>=07<@ RG:Z:474747 +427_12_1018_F3 4 * 0 0 * * 0 0 CTCTTCTCCTCCGGACTAGAGGCCCGGGCAATCAAGGCTGCGTAGACGTA >?<;5@:>>5>7:?<7@><=:>?92<?5>=;@@>?2<?>:?<9<4>56?@ RG:Z:474747 +427_13_422_F3 4 * 0 0 * * 0 0 AATAACGAAGCGTGTGTGTTAGCGGGAGAGCCGGGCCCCTTCCCGTACGT 9>A2,9@9<8<=;;7=7:>@1<:?37<1>1690>7=<:=A/>53.::<=/ RG:Z:474747 +427_13_494_F3 4 * 0 0 * * 0 0 CGACTACCCCTACCGGTCACCGCTACGGTGAGGCTAAGCTCTTCCAGACG .>>?@;A@?7?@<>39?>=7:==76;=;=65@:::9?8?3=@8=::@2<. RG:Z:474747 +427_13_606_F3 4 * 0 0 * * 0 0 TTTAACGCGATAATCCTTCGAAGGAAAAGAAGTGACTTTCCGTACATACC BB?A?@A??>B@A@<=@A==A>>>>AA@7<?:B=9<@A@A@2@>8><;<= RG:Z:474747 +427_13_861_F3 4 * 0 0 * * 0 0 CGAGGTGCAGGCCTGCTCTGGGGACCCACTGTGACCAGGCGGCCTGCCAC =>>@<@>BB>>58A=@A<BABA:=>@B:==?A9<AA@7::@;??:A?;2> RG:Z:474747 +427_13_961_F3 4 * 0 0 * * 0 0 GACGGGAGACGCTGCGATCGCACCTTAATGGGGGACCGGATGCACAAAAG @BBBBB@BB@B>BBAB@B@AB@ABAABBA?B?B@>@@BA=A?A:<>BBB3 RG:Z:474747 +427_14_270_F3 4 * 0 0 * * 0 0 GCAGATGCGTGGAGCAACGGTGGTCTGTAGATCGTCAGGATCTGAAACCA A=A@?BB>@9@BAA89>A@:A@@>2@A;383B><;:;>=1=8B:<>=?8= RG:Z:474747 +427_14_376_F3 4 * 0 0 * * 0 0 TCACACGCAGGGCCCCGTACGGAGAATACTGCTCAATGAAAATGGAGGGG B9??@BA@;?BB@@>AA?:?>A><=<A:4=5<?;=<?;?:95=61;<:<2 RG:Z:474747 +427_14_602_F3 4 * 0 0 * * 0 0 GGCCGGTTGGTCGACTAGGCAGGCCGACAATGCCTGAACATACTAGGGCC ,B=7==A:9;AA45,=:9/.2<;58>9806:=>:<8=877?=9198>:2: RG:Z:474747 +427_14_665_F3 4 * 0 0 * * 0 0 CATACGAGGGAGTCTCTAGCATAAAGCTGGGTCCCCTGACATTGACCTGA <A@@>B7<A5@>@>>>;<@68,9@;<-<<:>9?@?>6.A65=;=8569;5 RG:Z:474747 +427_14_1010_F3 4 * 0 0 * * 0 0 GCTGCTGTGGCCGGGCGCACCCAGACAGGTAGAAAGCCGACTCACCACGT @??A><@=ABA@?A?A@A??AB@AA@=<?B;<@?A<94?A=5;:@@2?@9 RG:Z:474747 +427_15_423_F3 4 * 0 0 * * 0 0 GCTGGAGGAGAAAGGGGGGACCCGCAATCGAGCGTCCGATAATGAAATGG >/B@=<A=??@B>A>B@@>9?@=A6@B@9?5@6A7A@>@A?=?A/@@A?= RG:Z:474747 +427_15_646_F3 4 * 0 0 * * 0 0 CAGTTCGCTTGGTCAATCAATATAGAGAACCTGGGGAGTAGTGTCCGGAG ?@=?>=A?@??B876:@65.B<914;;<06=?914:67997;5<:/7771 RG:Z:474747 +427_15_872_F3 4 * 0 0 * * 0 0 CGGGTAGACTTTAGTACCTAGACGAAGGGAGTGACATGACGTCGCGTACA <:??A@B@B==>@>A:6=?;5<::30<==63@;;1?=;A5,=7<,4;6@0 RG:Z:474747 +427_15_1039_F3 4 * 0 0 * * 0 0 AGAGTCAACTGAAGCTTCCGAGTCGTGAACGGGGGGAGGAGAGGGAAGGC BBB@@@B?A?ABB><A>?9=:=<:@:?>51:AA>?87>?979<>><>>=< RG:Z:474747 +427_15_1070_F3 4 * 0 0 * * 0 0 CTACTCCCTGCATTAGATACTGGAGCTCGGCTAGAGGGATGGCGTTAAAG =>A<@><?BAA?A?>?4??=;>?@>??=:@<6?98==><<:;<8A:7=@5 RG:Z:474747 +427_15_1081_F3 4 * 0 0 * * 0 0 GCTCCTCCACGATTAATCGTTGGGGTGCAATGAGAAAACAGCCAATGGCC @=AAAB@?@>?B@?=BB@?@B=@>;B@3:?BA39?>@7==<<<A?A<1A? RG:Z:474747 +427_16_264_F3 4 * 0 0 * * 0 0 CCCGATCCTAGGCAGAATCGAGAGAGACCACAACCCGCGAAAACCATTGC @<>?@@?AA?@??@>>?;:A>>A=?>=?>?:A>@@@:A8@@@:>/@>A4= RG:Z:474747 +427_16_565_F3 4 * 0 0 * * 0 0 AGCTATGGAATACCAAGACATCCAAGGAACTACTGCCGAAGGTTCCGGAG BB1AABB9@@B>3>=@@,?AB<8A>@@9<=BA8<<>>4A??@:??<?6@< RG:Z:474747 +427_16_1107_F3 4 * 0 0 * * 0 0 TGTGTAAGTGAGACACGAGAAGCAAGAACTGATGCCCTGCAGGGTTTAGG <+>B><:;A@B?:>>:A7B5;B@?B>8;:>8=B:B@=;@25A9A=>@1A: RG:Z:474747 +427_17_46_F3 4 * 0 0 * * 0 0 CCAATGAATGAAACAGGGTACCCGCGAGCGCCTGCTGAGCTGACAGTCTC :.>A:@>@?7A@<=2?;6?;>;99=<:8;95>0:><14;@4:><:,;:8? RG:Z:474747 +427_17_342_F3 4 * 0 0 * * 0 0 AGCTGGAGCTGCTGCCACGGACAAGGTCGGAGCTGAGGCTGGCTGGACTA BA?A?BB>>ABB@;;AA@@>AA>=ABB1??:B6>?>B72>@B49>?@3<< RG:Z:474747 +427_17_446_F3 4 * 0 0 * * 0 0 TATGCCGTGAGACGGGGGGAAACAGACCCTACCCCGATGTATAAGGCCGG =B?>8>BA?=>B;?;>A;:<=?937;?=2;6:==;9=@3?9;51;9:149 RG:Z:474747 +427_17_917_F3 4 * 0 0 * * 0 0 AAGACTACGCGTTAGGCCAAGAGAAAGACTCAAGAGACGACCTCTAAGAT @@=???A6=-;A:3<@?866@94:20<11@3;19:=:/:9<<45B@:48B RG:Z:474747 +427_17_1027_F3 4 * 0 0 * * 0 0 CAGTGCAATGGGAGTAAAGCAAATTCGGCAGCCCGTGGCCGAACCGCTTG A@@BAB=>B>BAA?5>=AA8:@B@;=@?@9:>BB::?@A54=B?<0<B@: RG:Z:474747 +427_18_267_F3 4 * 0 0 * * 0 0 CTGGCACCGAACGGAGGAAGAAATTGCGTAGATTACAGTAATCAGAAGAC AB@A;>@A@>AAAB:8B<>>@B@A=@?=@;=A<A3>?;@@?<:>+A?;A. RG:Z:474747 +427_18_481_F3 4 * 0 0 * * 0 0 GGCTCGCCCCAGTATCGACGTCGTATGAGAGATGACGAGGCCCGGGCGAG AB>?;B@A>=AAA@@@A?=6B=><=B=<8>=7A2=<==5;@5>7<=3=>; RG:Z:474747 +427_18_706_F3 4 * 0 0 * * 0 0 CTCTATATGGAAGGTTACTACTCAGTAACCTTAGGGACCAAGAACCGGTT >AAA@B?BAABAAAAA@@@A?B?>=B?@>>B@6??@><@@?:?A;<?=?? RG:Z:474747 +427_18_834_F3 4 * 0 0 * * 0 0 GGGACCCGACCTAGGACGGACAAAGACAGGGACGACAGATATACGATTCA @@@@><?A><@A?@7@A@@6=><?;<;;7@>=?=:<:<;>=6=/:A?B?4 RG:Z:474747 +427_18_846_F3 4 * 0 0 * * 0 0 GGACGCGTCACCAGAAAAACTAGGGGACGGTCCACGACCATGACGGGGAG BABB>BBBB7BBA@@ABBB1<BABA<B<A89BB?21A@@22@@A?>A@=? RG:Z:474747 +427_19_11_F3 4 * 0 0 * * 0 0 CAGCCCACATGCACCCACTGGGAAGGCCACCCATGAGAAACTCCACGATC =1:<4>?><;=?><1?:>?7>=>=:<=<99:><<55;>>,@=>93>/15: RG:Z:474747 +427_19_137_F3 4 * 0 0 * * 0 0 AAGCTGACGCTACCACGGACAACAGCGGTCAAGGCCGTCAGGCGAAGCGG ?78;?@?<>;=AA=;7?9<8;=<:<8><968;<9;:<:;::<53;=7+85 RG:Z:474747 +427_19_296_F3 4 * 0 0 * * 0 0 CCAGAAACCTCAGCAACACACCACCTAGGCCCCCAGGGTCGGAAGATGCA B@BABBB@BBBBAA@<AAAB>@A@?AA@?@>A=?9>?>?@@@?@=?A<@@ RG:Z:474747 +427_19_324_F3 4 * 0 0 * * 0 0 TGGACGATTTAATGGCAGGGAAGTGAGACAAGACTGGGGTCTGCGAAAAA A;=?3A>>:>>:<87:8483>>627=;40596=885:66>3810/843:9 RG:Z:474747 +427_19_533_F3 4 * 0 0 * * 0 0 GAAAGCTCGATCGTTCGACTTTTCTTCGTCTGAGTCAATCAGACTTGGCA BA@@?>@A?>A@@@@?@<=BAB?>BA?<>3B?<;@?AB?7><@@@AA6?- RG:Z:474747 +427_19_899_F3 4 * 0 0 * * 0 0 CATACCGTAGCCCAGGCAAGGAGACGCTCAGTGTAACAAGACGCAGTCGA @??B>=@<A?;@5AA8=6@B<:3A>6=57@9A2?A=;:A?4>,9A7=48@ RG:Z:474747 +427_19_1049_F3 4 * 0 0 * * 0 0 TCCGCTTGGAACATACTAAAGGAGAGTATATAGATGACCAGGAAAAGCTT ?<>@:A?@B>B=>@@?>AA?B>@@@BB35@B>98<>A5/AB><<BB>8<: RG:Z:474747 +427_20_363_F3 4 * 0 0 * * 0 0 GACGTCGAGATACGGTACCCGGGCTATATTTTAGACGACTTAAAACTAGA AAAA>@B>A+BB@A7B@?<==?>=@.@9?=>A=<<1><>>>=@@?74?.@ RG:Z:474747 +427_20_407_F3 4 * 0 0 * * 0 0 ATAACGGACACCTAAGAAGAGGGAGTTAACATCCAGCGTAGGGCGCGTAC BBBB?BBB?ABBBBABB@>BBB?@?AB?@@2B?@;@94B@AB??;/?@>= RG:Z:474747 +427_20_608_F3 4 * 0 0 * * 0 0 ACAGCACGCGGCTGCAGGAGGGAGAGAGGGGCAAGACGGACGGGCCTGTG B@9<AB?35>@>9?=AB7:@@A6<@A=>=A@@=<=?@<;:=<-<@:=0=: RG:Z:474747 +427_20_892_F3 4 * 0 0 * * 0 0 GACACTCCATGGGTTCGCCGTACGTCAATGCCGACTGAAGAAGCCAGAGG A@A@?A@@>@BA?AA@>@>?B@AABB?AB:@A>?AB<BB@A@>@>>9>?= RG:Z:474747 +427_20_982_F3 4 * 0 0 * * 0 0 TCCCGCGCAAACATCCTGATCAAAACCATCTCCCTGACGGTGGGCTTGAT @??>>>?98@@<36:;=:9=?:89<>9;.:7??/734:40;09.8<1834 RG:Z:474747 +427_21_328_F3 4 * 0 0 * * 0 0 TGTGCGTCTAACCCCCCCCAGGGCGACGAGCTGGGAAGGCGTGAACAAGC B@>>@BB;A?BB?A>AA>;8BB>:<@@<7<AB==>?><>9@A:=7A@/<= RG:Z:474747 +427_21_334_F3 4 * 0 0 * * 0 0 AACAGTAAACAGTAAGGGGGAGAAGGGGCTCTGGACGATGAAGAGGGGGG AB>4>?B@84>@>@;@BA<=<A<3@?A;1=6?=8>@=?7;A=<<?<;<69 RG:Z:474747 +427_21_366_F3 4 * 0 0 * * 0 0 CTACCCCCAGCTTTCCCCGTTGCCTGCGGCCCAGCGGTGGGGCCCATGAG >AA?@@@@>?>B=B><B@?A@AA;B?A=7:<B<>A9>B=@<BA?B>@;?7 RG:Z:474747 +427_21_473_F3 4 * 0 0 * * 0 0 GATGCATGGACGAACCACGCTGGGCAGGACGAATTCTACCGGGCTCGAGA BA?<>>B:>8=B@@8=<==;@A>@;<@;=<69/=<7>5<>4?9;91;36> RG:Z:474747 +427_21_537_F3 4 * 0 0 * * 0 0 AAGCAGTCATAGGGAGCTAGGCGTAGAGAGCGGCTGTGCAAGTCCAGACG AB@@@ABA:A?B@B>>AB=A@@;A?@A@?>8?A<A>=><@@4>=@@7:=9 RG:Z:474747 +427_21_563_F3 4 * 0 0 * * 0 0 CGACAATTCTCGATCGTAGCCAGTATAAGAGACACAAATGCGAGGACTTC >@AAAAA@?=>BAA>=A@@??>=A==@@?@<A:@>:A@@=9>@<@+>=@A RG:Z:474747 +427_22_56_F3 4 * 0 0 * * 0 0 GAGGCACCGTCACAAACTAACTACGTCGCTGGTTGCTCGCGATGAAGGGG ?>=>.?A@?9AB>;?7@A<<=B:;<@7=:?6:B:;3?>0@38A3??<8<< RG:Z:474747 +427_22_692_F3 4 * 0 0 * * 0 0 CGCGATACGAAAGGGGAATCGCCGAACCCGTAAACTAGATTAAGGGAAGA :?;<>B>:@>A>>AAA71@=<?3>2=>?7;9<<7;?7<>9?=+=?-?=7; RG:Z:474747 +427_22_787_F3 4 * 0 0 * * 0 0 CGGTGGCAAGTACGCCGGTAGAGAGGGGGGGGGGGCCGGGGGGCTCATCT <@5>:@@<76@A;;;;A7=;<><;8>A;4;>A<965+;<;<>598;6<82 RG:Z:474747 +427_22_927_F3 4 * 0 0 * * 0 0 TCAAACAGAGTAACTTGATTGGTTCCTAAGTGGTACAAGAGGTCGAGGAA @ABB@>?A??BAB@AB=A?B@@BB@A=@A@B<?9=?>=7<?>><9<>>?; RG:Z:474747 +427_23_177_F3 4 * 0 0 * * 0 0 CTGAACGGTGAACCAAGGCTGCGGCACATGCCAGGCCATTTTTGGTTATC >A@AA@@@A>BA>@=?A@>AA<>>=@@:?=>A<=>>>2BAAA4:,A?6A8 RG:Z:474747 +427_23_740_F3 4 * 0 0 * * 0 0 GCAATCATCAGGTTCGGACTGCCACGCAAACTCTGAGAGGATTTTCTAGA B@@AB@<?@AA@A?@?A@?>A;@>@B;?AA=2>?@A/A=A@A@@B<??7> RG:Z:474747 +427_23_874_F3 4 * 0 0 * * 0 0 GGAGAACTCTAAGAAAGAACTTTAAACCAGTCTTGCCCCCCGATCGTGAA <@ABBBAB=AABAAA@@BA<>A@@B?A??=A@B@@@B<BBB<=<@:>?>: RG:Z:474747 +427_23_986_F3 4 * 0 0 * * 0 0 CGGTCTGTTTTGCGGGACACGAGGTCGTGAACTAGACTGCGGGTGCATCG @6=??@<<><>@A@:<=<;==>@;3=>8=;>::?8@?9=99=4:6@<67; RG:Z:474747 +427_23_993_F3 4 * 0 0 * * 0 0 AGACTCCGGGACAATGAGTCCAGCAGAGGGTGATGAAGGAACGAACGGAA @>BAAA?BBB@?B@BA@ABAB?B?A@A?AAB@<AA?>@=AA<ABB@:@AA RG:Z:474747 +427_24_476_F3 4 * 0 0 * * 0 0 CAGCAGGTCCAAACGTGGATCCGCGGGCGGAGAAGGCGACACAGGGCAAA =B>:>>A<<76===6=?;3=;<<45<=6,876968:-256;693464<<< RG:Z:474747 +427_24_880_F3 4 * 0 0 * * 0 0 CGTAGGTAGGCCAGGCGAGGTATTCTATCTGGGCGCAATTACCAGGAACA AAA+AB@?;@AA?;?ABA>AB>B:=BAA+@=A>4?>A?=@4?;2>9A=1? RG:Z:474747 +427_24_952_F3 4 * 0 0 * * 0 0 GGTTTTTCCTTGTTCATGTGTAATCCAGTATGGAGGGCCAAAGAGAGTCC @?B>@9?@-16=9<54:-<53=6>:2;.41/<176,>8137;5:.9=905 RG:Z:474747 +427_24_1040_F3 4 * 0 0 * * 0 0 CCATTTTCCCAGTGAGCACCCTTGCTTCCAATCAGGGGACTGGCTCAGAA 45/2<9A@A93A7<5:;@6=<A:7=:B5740@<698=3<:8:8-:5,220 RG:Z:474747 +427_25_60_F3 4 * 0 0 * * 0 0 TGAGGTATGGGAGTCGTAGGCGCACTCGAGGCGCCTGAGGAAACACCCTC A/>>=?==>:>>8?:>=.=>9>84:@:96<7>6<=<93<<5;>:8==.1< RG:Z:474747 +427_25_234_F3 4 * 0 0 * * 0 0 TATCAAGCAACGGGTGTATGGGGGAAGAGAAAGGCGATCCCACCAGATCA 0>@</1A7<+8A64::>4<9<@88=9>94<8@:7<9=>;?8:;195:<5> RG:Z:474747 +427_25_854_F3 4 * 0 0 * * 0 0 AGCACTCGCGTAGACAATCGACAGCCCTGACCGAGCGAATAAGGGCTGAA AA@BBB?AB=B@@@>=;B;@4?B9?=@B;@6A?9=<:A@A6:73@55>2> RG:Z:474747 +427_26_256_F3 4 * 0 0 * * 0 0 GAGGGCCGGGGGGCGATCGAAGAGTCTCGAGACGAGGCCGTGTCTCGGAA BB=BAA@@BABB?7A2>-@@@>@?AAB=@8@?9><@>:7>@>:7@@45+8 RG:Z:474747 +427_26_331_F3 4 * 0 0 * * 0 0 TCGCTCGCGCTAAGATACAAGGAAGCTCAACTTTTAGCGCGCATAGGCTG =73:><A;=9?<>;/A;;:<=?276:<19;;A<7<<9<3:9:-.<<>.74 RG:Z:474747 +427_26_583_F3 4 * 0 0 * * 0 0 CACGCGTTATGGAGCTCGGCGAGGGGACTAGGAGCAGAGTCTGCTTAGAT AAA@ABBBB?@B@?=B;>AA?=?@A@>7A@AA>>@==@?A=B==BB7:AA RG:Z:474747 +427_26_646_F3 4 * 0 0 * * 0 0 AGAAACTCTGAGCCGGACCAAAATTAGGAGATCAAGAACCCCGGGAGGCC @@AAA?A>??BB@@A?;A@=BB??:AA7=8AB:><=<==@B;:9:A:>?5 RG:Z:474747 +427_26_857_F3 4 * 0 0 * * 0 0 TTAGCCGTCCGCTGTATCAATCCAGTGTAGTCGTCGTAAACGTAACGTAC >A?=>@@<><=<=><@?7<9@><?:@;@8:@@;6<8>>A9=1/A??5:@. RG:Z:474747 +427_27_160_F3 4 * 0 0 * * 0 0 TTAAACGTATTCTAGTACCTAAAGGAAGCTGGGCTCACAACGTTTAAAAG >>AA@@-@A?A<>A;@647A=<>9=?;:7@8;3>@2:5@<:7@?A99:?4 RG:Z:474747 +427_27_231_F3 4 * 0 0 * * 0 0 GGCGGGCAAGGGCTGGGGATGGAGACGACTACTTTCCAAAGTCGGCATGC ABAA?AB=>>@B>@?@@6;B@A5;@@@=8=>;:<A?@.?;<@;8=>9<5< RG:Z:474747 +427_27_369_F3 4 * 0 0 * * 0 0 CAATGCCCCTGAAATGGACGTACGCCTAACCGGAGCCGGCTGGGCTACGC ;3:7?@=34?A<3/@A?14<A8;4>7=31<98.0:<<54<77659?4.8< RG:Z:474747 +427_27_778_F3 4 * 0 0 * * 0 0 GCAAATGCCGAAGAAACAGAGAGAGGGCACGGCAGGACACCACCTAGACG AA:=6AB=;=>?;=:@>6=;>>:8=@@=;7A@><?A@?=<???;@?===7 RG:Z:474747 +427_27_939_F3 4 * 0 0 * * 0 0 AAGGAGGGACACAAAACCCCGGCTAATCAGAGAGCAAGGGGAGTCGTCGA 2:53=@:<@9:<?@??28>@<5:A<@>;02=6867A=<<@58->;:72/2 RG:Z:474747 +427_27_1002_F3 4 * 0 0 * * 0 0 GATGCCGATAATTACACACCCCCAAGTGCGAAGGCAAAGGATGGCTTCCC >?<>B<A<=?<B;;9@A9>?@A:A=<A5<3=B:;:AA==0A>3<37A>=5 RG:Z:474747 +427_28_593_F3 4 * 0 0 * * 0 0 TGGCAGAATATTACCATCTAGAGAGAAAAGAGGGTTAGACGCAGGCTAGA 4B;?>@@==;A@=;;A?-;?@@:=?BB95><@<4AA<;>:?97<>@?<89 RG:Z:474747 +427_28_739_F3 4 * 0 0 * * 0 0 CAGCTCCCCGCGAAGCTCTCATTACCTCGGGGTGACTACTAAACGTTGAG 6B=@AA<;=3:B?@65@8@>5A:=>@A859<>99>4A</?:;?596A348 RG:Z:474747 +427_28_798_F3 4 * 0 0 * * 0 0 TACGTAAACCACCTCGCCCGCACTCCAAAACCGAGACCTTCCCACATCAG B@@@@???<36?8:::<=?6-;89<;;:4994<.;5>A5:43>+>0+<11 RG:Z:474747 +427_28_923_F3 4 * 0 0 * * 0 0 CAGCCTTGATCCTACGCTGCGCTGCCGCGAGCGTGGACGATGCTCGAGCC ?B=A?B@>A8BB@>>@>B;6>>AA;A8=:2@:::8?8>66A4?<:?4?;; RG:Z:474747 +427_28_1127_F3 4 * 0 0 * * 0 0 GTCCGGGACCTCTTACCCAACACAAAGGCCGAGACCCGTTGCAACTGGCG ??BBBB?@BAB@BABA@?BBA>@BBAA=?>BB>?@A=:?@9@BA@78?B- RG:Z:474747 +427_29_95_F3 4 * 0 0 * * 0 0 AGACGAAGTGGTGATGGGTGTAAACGGCCCGGCGTAGAGCACGCTCGAGC ?8?@>A><<:9??5????;;>@@9=<7?8<==>4@-==7;/5>1;4;;24 RG:Z:474747 +427_29_521_F3 4 * 0 0 * * 0 0 CTCTGACGTCCCATGAACTTCGCGAAGTCACCCCGGCACAAAACGATTGC >B<@=AA===BB>?<>B:>>@;<6>=?>/;>B?<=3@0;?>><88=;<03 RG:Z:474747 +427_29_911_F3 4 * 0 0 * * 0 0 GTCCGCCAGTCCAGACTGGACAATTCGGACAACGGGCTGAGGCTAGGGAC B?BA@BA@B@?AAB=?@ABB=@BBB@B>A<>@@BA<=?BA>?=@B<B<@= RG:Z:474747 +427_29_970_F3 4 * 0 0 * * 0 0 GAGCTCGACGCGGGCGAACAAGTGAATGCCTCGAACAGACAGAGCGGCGA A@78BAB:>=BB9;>BA89BAA88AAB-:=@@4<<A@2:>>>.,9>B-78 RG:Z:474747 +427_29_978_F3 4 * 0 0 * * 0 0 ACCCCAAATTTCCGCGCTTACAAACATCTGCGACAAAGATATGGTCCCGG A?@BAB@?B?AA?B?@B@BA>ABB?A?9A@??=7@AB/A?<A?<@@@=@? RG:Z:474747 +427_30_261_F3 4 * 0 0 * * 0 0 AAGAGCGGCGGCCAAGAGGCTGCTATTGAAGCCTTGCCCGTTCACCACCC A?>??A@@>?@@=@<@<??=A?>@>BA<>>>@7>?<??>>=<=<=>:;?@ RG:Z:474747 +427_30_606_F3 4 * 0 0 * * 0 0 AGTAGGAACCTTACACACGGGAGGCAATCCCTGGCGTGAGGCTCGAGGGA >?@8=@@:<<@A86;A=88>@?8/-<??699A929>>667<9=59>881: RG:Z:474747 +427_30_752_F3 4 * 0 0 * * 0 0 CGGCGGAGGCAGACGCACCATACTGCAACGGAGGAGGGCAAGATGGCGAT @B@=?B?@>=>A.<>>;8;9@@<>;AA:;;??8:3@>:;8<=6=6:0624 RG:Z:474747 +427_30_764_F3 4 * 0 0 * * 0 0 TTGAGACCGAGGGCAGCGCTAGAAAAGCGTGTATTCACGGGGCGAAAGGT BB?A@@=0>3?A:=8?;98??>7=<?@/<9:A3=:=;9=8<<8:?@<9;> RG:Z:474747 +427_30_773_F3 4 * 0 0 * * 0 0 CGTTGCGCAAGAGAAACCGCAGCTACGGCACCGCCGTATACCTAATCCAA <@BBB=BBB@=?@B?=A@@==@@@@=B??===@>>;>A=7A@@8<8<>>? RG:Z:474747 +427_30_959_F3 4 * 0 0 * * 0 0 AGGGAGACATAGCCTGCACTCCCAACCAATTTGCCACGAAATGGTCATAT >=@@?@=?;BA@>9BA=:=BAB=;:AA;9BB?88<==;??=?79;6677@ RG:Z:474747 +427_30_983_F3 4 * 0 0 * * 0 0 CGTCTGACTAGGACTGAGAACCTCACCCTGGGCTCTCTAGAGAGGCTCCG >?@B?BA@A=BAB>@BAAB?B@AA=BB?@?B@A@9A:A<7B<B@>B<@@A RG:Z:474747 +427_30_1018_F3 4 * 0 0 * * 0 0 CAGAAAGGCCCCTAAGGCACACACCCGCATGAGGCCAGGCTACCCCAAGC @@@AABB@B?A@;4AAA<;A?A>4AAA98BAA:9A@B=3B;A;:A>A=,B RG:Z:474747 +427_30_1044_F3 4 * 0 0 * * 0 0 CCCTTCGGAGGCGGACCAAGACAGCTAGGGAGGGAGAAAAAAGAAGAAAC ?BA@ABB=;AA><==AB>=@>A@=>=A?=A=A>9A7BABB@A3@A.<76+ RG:Z:474747 +427_30_1053_F3 4 * 0 0 * * 0 0 CGCCGTGCGCTTCTATCGTGGGACGCAAGTTCCGGATGATGACAATACGT <?A=@@ABB>BB@?@;;8A@>@??@>=A<A=9?@?9=9@<.:<BB:9<== RG:Z:474747 +427_31_153_F3 4 * 0 0 * * 0 0 GACAAGGAACTGCCAGGCCGGAGCGGAAGACGTACCATCATCAGCGCGGG ?>=>9AA?@;@A?;9@@:;;>>6<;?@9<<<A@8<><=8@A=>1?9>:9= RG:Z:474747 +427_31_598_F3 4 * 0 0 * * 0 0 GGCAGGGTCTGGCTAGCATCGGTTAAGGATCTGGGGGAAGAGAATCTACG BBA?AB@?/-ABA=9A:1?9BA@@<8@>0<>?=<>@@=?::AA>@::99= RG:Z:474747 +427_71_906_F3 16 chrX_part 28077 25 49M * 0 0 CTTTGAAGCAATTGCGAATGGGAGTTCACTCATGATTTGGCTCTCTGTT []XNU]\]WO\]]]]]\]YX]]]]]]]]]]]]]]]W]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:14T34 +427_292_217_F3 0 chrX_part 14846 37 49M * 0 0 GTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTTTCCTGACTT ]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +427_794_484_F3 4 * 0 0 * * 0 0 GCTCATACGGACGAGACACCCGTTCCACGATTGAGGCCACCGGGGGGAAT A@BAABBBA=ABBA=@@B?4<BAA4>A@81@B@26>A@+<>=?<;?BB:2 RG:Z:474747 +427_1253_1057_F3 0 chrX_part 14947 37 49M * 0 0 TTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATGTGTCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]VZ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +427_1299_965_F3 16 chrX_part 13217 25 49M * 0 0 GGGATGCTCTCTCTCACCACTCCTATTCAACATAGTGTTGGAAGTTCTG ][]]]]Y]]]]Z]]]]]]]]]Z]]]]Y]]]]]]]]Y]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:7C41 +427_1444_687_F3 16 chrX_part 25682 37 49M * 0 0 TCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAACACCGCATGTT ]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +427_1522_8_F3 0 chrX_part 12254 0 49M * 0 0 ACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCAC )]]]]]]]]]]]]]PU]]][]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:34C14 XA:Z:chrX_part,+26921,49M,3; +427_1891_897_F3 16 chrX_part 26846 23 49M * 0 0 GGGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATC ]]]]]]]]]]]]]]]QW]]]Z]]]]]]]]]PX]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-14740,49M,3; +427_1927_689_F3 0 chrX_part 26924 0 49M * 0 0 AGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATC ]]ZY]]]Z[]]]ZROQFMVZ]ZYUV]ZXSLTWZUT]]]]]]Z\[ZXW[T RG:Z:474747 XT:A:R CM:i:1 X0:i:3 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:34T14 XA:Z:chrX_part,+14818,49M,2;chrX_part,+12257,49M,2; +428_247_467_F3 4 * 0 0 * * 0 0 CTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCGAACCACACCG ABAABAAAB@AAAA?>>?AA:?@A:9=>A@4;?B@<>8B>.8?A>1:<@> RG:Z:474747 +428_385_1306_F3 0 chrX_part 27180 37 49M * 0 0 TTTCTTGTAAATTTGTTTAAGTTTCTTGTAGATTCTGGATATTAGCCCT ]]]]]]]]]]]]]]YW]]]][]]]MN]]]]]]]]]]]]]]]]]][]]\Z RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:23C25 +428_435_1382_F3 0 chrX_part 14761 0 49M * 0 0 ATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTGACTTCCACAATG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]ZJ RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:35C13 XA:Z:chrX_part,+26867,49M,2; +428_589_1697_F3 4 * 0 0 * * 0 0 CGAGTCTAGAAGAACGAAACGCGCCCCAGGCCGAAGTCTAAGGGGGGCCA @1>B6<<;A?@?B></=B@@/>>B???5?:=<=?9:=12><:>>;:<577 RG:Z:474747 +428_615_1095_F3 16 chrX_part 28737 37 49M * 0 0 ATTGAGGATTTTTGCATCAATGTTCATCAAGGATATTGGTCTAAAATTC ]]Y]]]WY]]]]]]MX]]]]]]]]S\]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_628_321_F3 0 chrX_part 28192 37 49M * 0 0 CTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGT ]]]]]]]]]]]]]]]]]]U]]Z[Y[]]]W\]QO\]\ZYPPVU]XY]\WU RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_666_413_F3 0 chrX_part 27425 37 49M * 0 0 CTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAACGTTTAAGTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]][]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:40A8 +428_912_273_F3 4 * 0 0 * * 0 0 TCCACCGCGAAACGGGCCCCGTCCAGAAAGAGAGCCCCGACTCCCCAGGG BAABBBB@@BABA@BB@>??BB@A?@A=@<>@??<ABBA::@A@@@@9>< RG:Z:474747 +428_1011_1047_F3 4 * 0 0 * * 0 0 TCGCGCCGCCCTAAAGCCCAGAGTTAAGGGACCCTGAGGGGACGTCCAGC BB?>?BA@<>?B>=?A?>8@AB@A?A@>;=>>??@>A?==@?=6@>7;5> RG:Z:474747 +428_1380_646_F3 16 chrX_part 3496 37 49M * 0 0 ATAAAGAAGGTGGTTTTCAGGTCTATATTCAATGGCTCTGGTGTAATAG ]]]]]]VX][[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +428_1424_131_F3 4 * 0 0 * * 0 0 CTCTATTAGCCCATTGTCAAGGCGACAGACACACAACAATCCGACACCAT 6B7?@BB>:>AB:@BBA>>8B8;:7><<>=9<6<+>8><<?@9>05<46= RG:Z:474747 +428_1495_1538_F3 0 chrX_part 26855 37 49M * 0 0 GGATCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACACTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2G46 +428_1562_623_F3 4 * 0 0 * * 0 0 CATGTATTTGACGGATGGTCCAAGGACGATAACCAATAATCCAGGAAAAA ;@A@BABA?AA@A<B?@?==@BA=:?@?><?>?5:==A?4:>?32:=@?< RG:Z:474747 +428_1569_464_F3 0 chrX_part 26911 0 49M * 0 0 GAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCT &)]]]]]]\]]]]]]]]]]]]]]]LS]]YS]]]]Z]]]]X\]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:47T1 XA:Z:chrX_part,+12244,49M,3; +428_1573_204_F3 4 * 0 0 * * 0 0 ACAAGTCATGTGACGCAATCACTTAAGGTGCAGGTGGTGAAGCGGAGATG B=;=ABA9:AB@;=AA44>5?;==65=2;978?:;19?/@-1=<==3?:= RG:Z:474747 +428_1632_1017_F3 0 chrX_part 14942 23 49M * 0 0 TTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTTTTTCATG ]]]]]]]]]]]]]]]]]]Z\]]]YU]]]]]]]]RS]]]]]W]]T[TT]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+27049,49M,2; +428_1643_455_F3 4 * 0 0 * * 0 0 TAGTCTAGGATTTCCCACACCACCGGCCAACCGGGGGTACAATGCTCGGC A>>A>AA?;BBBAA>B@@?=AA@@<9>>@@??>A?<=<B@=75<A>;:<@ RG:Z:474747 +428_1684_1168_F3 16 chrX_part 27017 37 49M * 0 0 CTAACTGGTGTGAGATGGTATCTCATTGTGGTTTTGATTTGCATTTCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_1691_159_F3 16 chrX_part 14618 37 49M * 0 0 TTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGAATAGTGC ]TO]UY]]]]]]]]]]]]VT]]]]]]]]]]]]]]]]]]]]]]]]]]]+/ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +428_1816_859_F3 0 chrX_part 14837 37 49M * 0 0 AGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGTT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +428_1829_1041_F3 4 * 0 0 * * 0 0 AATAGTGTCACATCGCGAAGGAGCCCGGATACAGAAAAACGTCGAATAAG ,??A@9AB>@5AA>A9A?=?:B=?:5A=;>8@;:89A>=92A96<4@>;9 RG:Z:474747 +428_1841_222_F3 16 chrX_part 26855 37 49M * 0 0 GGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATGGCCACACTG ]\Z]]YV]]]]]]]][S[]]]SQ]]]]]]]]\]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:39C9 +428_1971_118_F3 16 chrX_part 27350 25 49M * 0 0 TGGCTTTTGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCC XX]]]]]]][Y]]\]]\]]WX]]]\]]]]\\]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:7G41 +428_1978_162_F3 16 chrX_part 28066 25 49M * 0 0 TATTTTATCCTCTTTGAAGCAATTGTGAATGGGAGTTCACTCATGATTT ]]]]]]]]SS]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:8T40 +429_320_1424_F3 4 * 0 0 * * 0 0 ATTGAGCGGGCGAACTGCGAGCACTGATTGCGTGATAGAGGGTAAACAAT BB?9=>B<=><BA<??@=;=:=A5=?@A>==AA48?72:<>>=??@:33= RG:Z:474747 +429_498_1544_F3 0 chrX_part 12236 0 49M * 0 0 GACTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T47 XA:Z:chrX_part,+26903,49M,2; +429_517_617_F3 0 chrX_part 27136 23 49M * 0 0 CTGTTCATGTCCTTTGCCCACTTTTTGATGGGGTTGTTTGTTTTTTTCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+27136,49M,3; +429_525_1146_F3 16 chrX_part 14836 37 49M * 0 0 CAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTGTTGT TTXVUPQYSVYW]]]TT]]]OT]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +429_566_873_F3 16 chrX_part 28192 37 49M * 0 0 CTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGGT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +429_627_1289_F3 4 * 0 0 * * 0 0 TTAGCGCCTACTGAAACTGCAGTGTCACATCGCGAAGGAGCCCGGATACA BBBBBBA?BBBB<BBB@@A@B@?=A@>>@AA??>?>B>:=A>===??<<B RG:Z:474747 +429_641_991_F3 0 chrX_part 27721 37 49M * 0 0 ACTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGTGTGATGCCTCCAG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]][ RG:Z:474747 XT:A:U CM:i:2 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:35C0A12 +429_706_923_F3 0 chrX_part 14842 37 49M * 0 0 AAAAGTGTTCCTATTTCTCCACCTCCTCTCCAGCACCTGTTGTTTCCTG LY]]]\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:22A26 +429_820_1223_F3 16 chrX_part 27415 25 49M * 0 0 ATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGTCTAA [VUZ]]]]]]]]]]TT]]]]]U]]RZ]]]]]]]]]Y]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9T39 +429_880_338_F3 4 * 0 0 * * 0 0 GATGTGAACCCGGAATTCCAACGTCACTGCGGGGATTCGTTTAACCCAGG A@A?BBAA@@?B>A@@A=?B?A8?;=A=>@@A?>?@A8;AAA=A<?<;>= RG:Z:474747 +429_899_643_F3 4 * 0 0 * * 0 0 CACAAAATTCACAAATGACGGTACTCAATAGCGGAATATGACTGGACGAT ?AB@6>?AB<=@AA@>@<A>=B@=>3@?@><A@@=>>?A=>;B8=@@6<< RG:Z:474747 +429_1074_1497_F3 0 chrX_part 26923 0 49M * 0 0 TAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACAT ]]]]]]]]]]]]VV]]]XZ]]]]]]]]]]]]]YZ]]]]]]]]\[]]][Y RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:35T13 XA:Z:chrX_part,+12256,49M,3; +429_1244_262_F3 16 chrX_part 27844 23 49M * 0 0 TTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCAT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+15141,49M,2; +429_1264_776_F3 16 chrX_part 27356 37 49M * 0 0 TGGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCC %!X\[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]* RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +429_1285_1614_F3 4 * 0 0 * * 0 0 TGTAGTTGCTACCACAGCCTAACAACACACAGACAGCGGAACTGTTACCC A@BB?ABBBBBBBABBBB?AABBA@<BB?A@B>6@=@@;BA@@>@;?B?? RG:Z:474747 +429_1292_826_F3 4 * 0 0 * * 0 0 CGGTGAGGCTCCCGTCAAAGGAATATCACTGCGGGCCGACCGATCACAGT >A@A?AA>?BBB>@@;:?3>A?@??7@@;A=?<<<>=;@??<?9?7<A2A RG:Z:474747 +429_1304_326_F3 0 chrX_part 12249 0 49M * 0 0 GTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTC ]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:39C9 XA:Z:chrX_part,+26916,49M,3; +429_1398_1503_F3 0 chrX_part 27821 23 49M * 0 0 TCCATATGAACTTTAAAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCAT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y[]]]\]]]]X\]]\U]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-15164,49M,2; +429_1427_1475_F3 16 chrX_part 27983 25 49M * 0 0 TATCCTCTTTTATTTCATTGAGCAGTGGTTTGTAGTTCTCCTTGAAGAG ]]]TOYT\]]]]]]]]]]]]]X]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:16C32 +429_1568_890_F3 0 chrX_part 13190 25 49M * 0 0 ATTCCCTTTGAAAACTGGCACAAGACAGGGATACCCTCTCTCACCACTC ]]]]]]]]]]]QT]]]PT]]]R]]]]MS]]]]]]]]QT]]]\]]]]QU] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:32G16 +429_1819_792_F3 16 chrX_part 3467 37 49M * 0 0 GTACGAAGAAAACAAAGAGCTCGGTTACCATAAAGAAGGTGGTTTTCAG [UMBRWX]UW]]]]]]]]]]]]]TU]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +429_1854_1258_F3 16 chrX_part 27411 25 49M * 0 0 CTGAATGGTAATGCCTAGGTTTTCTTCTAGGGTTTTTATGGTTTTAGGT ]]]][[]Z]]]]]]]]]]]]]]]]]Z]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:13T35 +429_1876_126_F3 16 chrX_part 27366 37 49M * 0 0 TGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGA W]Z]]]]\]]]]]]]]]]]]]]]]]]]]]]]][]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +429_1899_322_F3 0 chrX_part 27853 37 49M * 0 0 TCTGTGAAGAAAGTCATTGGTAGCTTGATGGGGATGGCATTGAATCTAT ]]]]]]]]]]]]]]\]]][Z]]]]Z\]]]]]]\\VZ]]]]]]SW]]]Z\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:48C0 +429_1905_281_F3 16 chrX_part 26882 37 49M * 0 0 TCCCTGAGGAATCGCCACACTGACTTCCACAATGGTTGAACTAGTTTAC ]]]][X]]]]]]]]]]]]]YX]]]X]]]]]]]]]Y]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:29G19 +429_1921_1124_F3 16 chrX_part 26708 0 49M * 0 0 TTAATCCAGTCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTG ]]]]]]]]\Y]]]]]]]]]]\]]][]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:0 X0:i:2 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-14602,49M,1; +429_1925_1090_F3 0 chrX_part 28003 25 49M * 0 0 AGCAGTGGTTTGTAGTTCTCCTTGAAGAGGTCCTTCACATCCCTTGTAA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:45A3 +430_78_1025_F3 0 chrX_part 14935 23 49M * 0 0 TTGTGGTTTTGATTTGCATTTCTCTGATGGCCAGTGATGATGAGCATTT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]Z]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+27042,49M,3; +430_89_1672_F3 4 * 0 0 * * 0 0 GGCGGAGATGTTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCG B?B?9@B@>=A@B=>A>?A@B<@==?=?@;>7A?>53A;>32@BAB>6?; RG:Z:474747 +430_131_637_F3 4 * 0 0 * * 0 0 ACCAGAGTTAAGGGACCCTGATTGGACGTCCAGCCACCAAGAGCGCGAAA 8??<>>@@8B68>?9=A8?=BB<AAA>0@;@<<A<>A9B@>A8=:@=A?; RG:Z:474747 +430_179_99_F3 0 chrX_part 14832 37 49M * 0 0 CCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCACCTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_392_28_F3 0 chrX_part 12248 0 49M * 0 0 GGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTT ]]]]]]]]]]]]]]]]]]]]]]]]][]]]]]]\]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:40C8 XA:Z:chrX_part,+26915,49M,2; +430_491_367_F3 0 chrX_part 27259 37 49M * 0 0 TCCCATTTTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]ZX]]]UU][]]]]]ZHR] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_607_895_F3 0 chrX_part 26847 23 49M * 0 0 GGATGGCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCG *]]]]]]]]]]]]]]]]]\]]]]]]]]ZZ]]]]\]]]]]]]]]Z[]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+14741,49M,2; +430_688_525_F3 16 chrX_part 27375 37 45M1D4M * 0 0 TGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGAATGGTATGT WW]]]]]Z]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]]]"!] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:45^A4 +430_691_1191_F3 0 chrX_part 26852 0 49M * 0 0 GCTGGGTCAAATGGTATTTCTAGTTCTAGATCCCTGAGGAATCGCCACA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:0 X0:i:2 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,+14746,49M,1; +430_693_248_F3 0 chrX_part 14829 37 49M * 0 0 CCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCAC -]]]]]]]]]]]]]]]Z]]]]]]][]]]]]]]]]]]]]]]]]]]]]]]\ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_821_1672_F3 4 * 0 0 * * 0 0 ATCGGCTGGCGCCAAGAATGTATTTGACGGATGGTCCATCGACGGCAACC A@?AAAAAA@=?:BA>B@>ABA?@A?B>:=@?<<:@>B=74@B;=><@65 RG:Z:474747 +430_874_1668_F3 4 * 0 0 * * 0 0 GAGAATTAAGGAAGGGAGCTAGCGTACTAAGCATACGGACGAGACACCCG A@AA>A@AB=@BAA@A@>@?B@=@?B@:A@?>:>A>=69@=@8A@@:/9? RG:Z:474747 +430_900_444_F3 0 chrX_part 26504 37 49M * 0 0 GTGATGTTCCCCTTCCTGTGTCCATGTGTTCTCATTGTTCAATTCCCAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:11T37 +430_1055_244_F3 4 * 0 0 * * 0 0 CGATGTTACCCCGCGCGAGACCCATCACACGACGTGCAATCCGCGAACCA ?BBBBBBBBBBBBBABB@BB@=<AB<>>B>9?<AB;:>BB@@<B?>3A@@ RG:Z:474747 +430_1080_625_F3 4 * 0 0 * * 0 0 AGAACTAGGCCTGACACTAGCCAGCCGGGCGTCACTGCAAGGAAACTGCC B=BBBBBBBB>BBBB@?BA@B?@AB>A@AA>A7A@B?+@7A>A?<B-=>@ RG:Z:474747 +430_1105_227_F3 16 chrX_part 27741 37 49M * 0 0 TTTGAAGTCAGGTAGCGTGATGCCTCCAGCTTTGTTCTTTTGGCTTAGG ]]]]]]]][\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16A32 +430_1195_1598_F3 4 * 0 0 * * 0 0 CCTTTTTCAACAAGAGTATTTAATGCTCTGCTGTTTAAGGCCCCTCTCCC @B@BBBBBBABBB@BBBBBBB@AA><6.=>@=5<BA4A5>@8A7B>48:7 RG:Z:474747 +430_1270_1392_F3 0 chrX_part 27268 37 49M * 0 0 GTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGCTGTGCAGAAGC ]]]]]]]]]]]]]]]]]]]]]]XW]]]SU]]]]]]]]]]]]]QT]]]Q[ RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +430_1280_786_F3 0 chrX_part 28246 23 49M * 0 0 AGATATACAATCATGTCATCTGCAAACAGGGACAATTTGACTTCATCTT ]]]]]]]]]]]]]]]]]]]]]]]SX]]]]]]]][]]]\RW]]]SZ]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:44C4 XA:Z:chrX_part,+28246,49M,3; +430_1307_10_F3 0 chrX_part 26911 0 49M * 0 0 GAATGGTTGAACTAGTTTACAGTCCCACCAACAGTGTAAAAGTGTTCCT !"]]]]]]]]]]]]]]]]]]]]]]]]]]ZR]]]]]]]]]X[]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:2 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:47T1 XA:Z:chrX_part,+12244,49M,3; +430_1403_722_F3 0 chrX_part 12260 0 49M * 0 0 TTACAGTCCCACCAACAGTGTAAAAGTGTTCCTATTTCTCCACATCCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:R CM:i:1 X0:i:3 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:28C20 XA:Z:chrX_part,+14821,49M,2;chrX_part,+26927,49M,2; +430_1406_34_F3 0 chrX_part 26518 37 49M * 0 0 CCTGTGTCCACGTGTTCTCATTGTTCAATTCCCACCTATGAGTGAGAAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:10T38 +430_1531_1322_F3 0 chrX_part 26775 25 49M * 0 0 CAATAAACATACGTGTGCATGTGTCTTTATAGCAGCATGATTTATAATC ]WP]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:46G2 +430_1586_641_F3 0 chrX_part 28277 25 49M * 0 0 ACAATTTGACTTCCTCTTTTCCTAATTGAATGCCCTTTATTTCCTTCTC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:31A17 +430_1684_261_F3 16 chrX_part 27257 25 49M * 0 0 TCTCCCATTCTGTAGGTTGCCTGTTCACTCTGATGGTAGTTTCTTTTGC QS]TU]]]YXVX]XJQX]]]][]YS]]]]\]]]\]]]]\]]]]]]]]], RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9T39 +430_1726_1548_F3 4 * 0 0 * * 0 0 TTTTCGACGACGAAGCTGCAAAAAGACATAGGCCCGAGGAAGCGCTACAC ;BBB=9@BAA3AA@>4=A>?<A@@=8<?;@8@@>>2=>8A69>5>4<==< RG:Z:474747 +430_1779_172_F3 0 chrX_part 25672 37 49M * 0 0 CTGGAAACCATCATTCTCAGCAAACTATCGCAAGGACAAAAAACCAAAC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]][[]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +430_1871_988_F3 0 chrX_part 14560 37 49M * 0 0 AAGGCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCC ]]]]]]]]]]]]]]]]]]]]]]]TO]]]]\]]][T]]]]]]]]]][]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1T47 +430_1994_1381_F3 4 * 0 0 * * 0 0 GACTCGGTCTCAGATCCAGGAGACTAACCAACCTTGAGGGAAATTAAGAG @BBBABBAB==ABB@>A@A?A@B?A>B@=?@AAAA=AA@8;ABBBAA?@8 RG:Z:474747 +431_44_655_F3 4 * 0 0 * * 0 0 GCTATTAGCCCATTGTCAAGGCGACAGACACACAACAATCCGACACCATC >-<=>@@4:=>@?A:>=9=::::=:5<:<66=7865<9;<59=13:+<;; RG:Z:474747 +431_50_371_F3 4 * 0 0 * * 0 0 CGGCCCCGTCCAGAAAGAGAGCCCCGACTCCCCAGGGCTACCAGCATAGA =AA@@AAAABBBAB@=@9@A@A@A?>B<??AA>@;?@?@>B?6=B7@8A@ RG:Z:474747 +431_274_859_F3 16 chrX_part 14611 23 49M * 0 0 TCTATCATTGTTGGACATTTGGGTTGGTTCCAAGTCTTTGCTATTGTGA ]]]]XT]]]]]T\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrX_part,-26717,49M,2; +431_362_522_F3 4 * 0 0 * * 0 0 CAGCCATAACGCGAGAAAGAAAGAGTATACGATTCAAGAATTAAGAGAGG ?B@?>ABBAA>B?A?@A@A@BA=A<8@>A?2@A@>AA?A?@<@A::779> RG:Z:474747 +431_427_471_F3 0 chrX_part 28034 37 49M * 0 0 CCTTCACATCCCTTGTAAGTTGGATTCCTAGGTATTTTATTCTCTTTGA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]WT]]]TR]]]SU]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A34 +431_436_304_F3 0 chrX_part 26555 37 49M * 0 0 ATGAGTGAGAATATGCGGTGTTTGGTTTTTTGTTCTTGCGATAGTTTAC ]]]]]]]]]]]]]]]]]]]U]]]]V[]]]]]]]]X[]]]T]]]]]][]\ RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:11C37 +431_510_914_F3 16 chrX_part 1438 37 49M * 0 0 TCCTTCTATAGAGTCTAGTTTGTGACCATATTTCTCATTCCAGAGGAAA ]]Z]V[Z]]]]]]WY]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +431_524_1355_F3 16 chrX_part 28191 37 49M * 0 0 GCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGGCTGAGACAATGGGG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +431_753_1184_F3 0 chrX_part 27127 37 49M * 0 0 GAGAAGTGTCTGTTCATGTCCTTCGCCCACTTTTTGATGGGGTTGTTTG Z]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:23T25 +431_933_606_F3 16 chrX_part 27360 37 49M * 0 0 TGCCATTGCTTTTGGTGTTTTAGACATGAAGTCCTTGCCCATGCCTATG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +431_1029_654_F3 0 chrX_part 27939 37 49M * 0 0 GATTCTTCCTACCCATGAGCATGGAATGTTCTTCCATTTGTTTGTATCC ]]]]]]]]]]]]]]]]]]]]VK]]]]]]]]]]]]]]]]]]]]]]]]]]] RG:Z:474747 XT:A:U CM:i:1 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:17G31
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bwa_wrapper_out7.sam Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,422 @@ +@SQ SN:chrM LN:16660 +@PG ID:bwa PN:bwa VN:0.5.9-r16 +853_7_53 77 * 0 0 * * 0 0 NNAGNCCGANNGGNGNNGTANGGNTNNATTGCGNCNCNNNNGGGCNNNCG !!14!3.15!!47!4!!8+1!$9!(!!,..1)&!3!(!!!!1/9&!!!,3 +853_7_53 141 * 0 0 * * 0 0 NNCNNNCGNTNAGTNGGNGGNGNGNNGGNNGNNNGGGGNGGGNGNGNGGN !!0!!!10!)!)0)!,-!##!%!%!!##!!'!!!%+&)!%$/!)!$!/(! +853_7_78 77 * 0 0 * * 0 0 NNCTNGGGGNNGGNGNNGGGNGGNGNNGGGGCGNGNGNNNNGGGGNNNGG !!##!###$!!##!&!!#$&!$&!&!!%&)'#'!$!#!!!!&)*(!!!&* +853_7_78 141 * 0 0 * * 0 0 NNGNNNAGNGNGTGNGGNCCNGNGNNCGNNCNNNGGGGNGGGNGNTNGGN !!#!!!5,!$!5&+!#8!)#!5!%!!3%!!'!!!$$8+!&)%!)!(!*#! +853_7_88 77 * 0 0 * * 0 0 NNGTNGGGCNNCTNGNNATTNTANCNNACAGGANCNGNNNNGGGGNNNGG !!61!5551!!13!4!!.,)!/,!3!!.)/17+!&!5!!!!-'0.!!!,5 +853_7_88 141 * 0 0 * * 0 0 NNTNNNGGNGNATGNCTNGGNGNCNNGTNNANNNGCTANCTGNCNGNTAN !!1!!!42!5!,25!24!77!4!3!!81!!,!!!5147!)/6!,!,!1&! +853_7_132 77 * 0 0 * * 0 0 NNGGNGATGNNTGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!$(!,#&#!!&#!#!!#($!%$!#!!#&%#$(!#!#!!!!)(*+!!!,2 +853_7_132 141 * 0 0 * * 0 0 NNGNNNGCNGNGAANGCNTANCNCNNTANNANNNGCCGNGAGNGNANGGN !!&!!!5#!)!)&+!2&!',!&!'!!1)!!1!!!4()$!/&,!'!'!0$! +853_7_141 77 * 0 0 * * 0 0 NNGGNGCCGNNCANGNNGGCNAGNCNNGGACCGNANGNNNNAGGGNNNGG !!54!9518!!1&!5!!/31!)0!6!!)533/:!5!6!!!!)/<:!!!,7 +853_7_141 141 * 0 0 * * 0 0 NNGNNNCTNCNCCGNGGNAANANANNAGNNGNNNGGGGNGAANGNGNGGN !!,!!!),!5!3)+!//!),!3!9!!&/!!+!!!**#)!.)(!(!(!43! +853_7_146 77 * 0 0 * * 0 0 NNCGNCACCNNGCNGNNGCTNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!10!/240!!0)!2!!#&'!'5!(!!(.-*$3!*!4!!!!+#(.!!!.( +853_7_146 141 * 0 0 * * 0 0 NNCNNNCGNGNGCGNGANCCNGNCNNCGNNGNNNCTCCNGGTNCNTNGCN !!1!!!33!4!#15!7(!51!1!3!!.5!!5!!!/)/,!&-/!,!.!4,! +853_7_269 77 * 0 0 * * 0 0 NNCGNGGGGNNGGNGNNGGGNGGNGNNGGGGGGNGNGNNNNGGGGNNNGG !!%&!('#%!!#*!#!!/##!&)!$!!'$',%,!%!2!!!!3,,*!!!,2 +853_7_269 141 * 0 0 * * 0 0 NNCNNNGCNGNGCGNAGNACNGNCNNGCNNTNNNGGCANCCTNGNTNTGN !!3!!!/.!+!*4,!42!)8!2!3!!62!!0!!!84;)!)7.!5!/!&%! +853_7_321 77 * 0 0 * * 0 0 NNGANGTGGNNGCNTNNGGGNCGNCNNCGAACGNTNANNNNGAAANNNGG !!+$!+21(!!*-!.!!)#1!8/!9!!6,3+%6!'!,!!!!2&6,!!!&2 +853_7_321 141 * 0 0 * * 0 0 NNCNNNACNGNGAGNCANCCNANGNNGGNNGNNNATTGNCCCNGNANGGN !!$!!!&'!.!*##!6$!#1!+!#!!.+!!)!!!36(#!*5'!#!4!+(! +853_7_386 77 * 0 0 * * 0 0 NNCGNGTAGNNGANGNNGTCNCGNANNGAAGTGNTNGNNNNAAAGNNNGG !!31!:7-%!!:,!-!!21,!77!)!!227:9:!2!;!!!!)',%!!!86 +853_7_386 141 * 0 0 * * 0 0 NNGNNNTCNGNGCCNCCNTCNGNANNTCNNANNNGATANTCGNCNANGGN !!;!!!86!=!;9=!%5!58!<!2!!62!!&!!!&3:&!//8!*!7!5*! +853_7_405 77 * 0 0 * * 0 0 NNGCNAGGCNNTCNGNNAAANGTNGNNAGAAGGNANGNNNNATCTNNNCG !!<8!8;==!!;>!:!!7:7!7;!8!!7:>48=!2!=!!!!536*!!!;: +853_7_405 141 * 0 0 * * 0 0 NNGNNNAANANAAGNTCNGTNANGNNTGNNTNNNCATGNCGANGNCNGGN !!=!!!;:!>!<8=!9<!:<!=!>!!;8!!;!!!;//1!&(&!/!'!*-! +853_7_411 77 * 0 0 * * 0 0 NNCANGAAANNTTNGNNAGGNAGNANNGAAGGGNGNANNNNAAAANNNAA !!,/!13;,!!&,!+!!2/%!*1!$!!%*)+#,!,!&!!!!'-'&!!!++ +853_7_411 141 * 0 0 * * 0 0 NNCNNNAANCNAAGNAGNCGNCNGNNGGNNGNNNCAGANTCGNGNANGCN !!$!!!-#!#!*#+!,&!2*!#!#!!%'!!)!!!'$)$!/-#!#!'!,+! +853_7_445 77 * 0 0 * * 0 0 NNTANTGCANNACNCNNCGANCCNTNNTACGGGNCNGNNNNTGGGNNNGG !!&'!*+'#!!'%!&!!,%#!)%!(!!'##$&'!#!$!!!!$$#,!!!#$ +853_7_445 141 * 0 0 * * 0 0 NNGNNNTTNANGTTNATNTCNANCNNCTNNGNNNAAGANGGGNGNGNGGN !!&!!!0%!#!,&'!,'!$$!&!,!!&)!!'!!!..*&!#,7!1!.!10! +853_7_469 77 * 0 0 * * 0 0 NNGGNACAGNNGANTNNGAANGCNANNAAGGAGNGNGNNNNAGATNNNAG !!##!*($&!!##!#!!%))!#1!%!!(,##$.!#!(!!!!##'#!!!&$ +853_7_469 141 * 0 0 * * 0 0 NNCNNNCANTNTCTNTTNTTNANTNNAGNNCNNNGTTTNGTANGNTNTGN !!#!!!%%!$!))+!$,!*%!.!(!!.#!!#!!!#&##!##&!#!#!##! +853_33_1583 77 * 0 0 * * 0 0 TATGTATTTCGGTACCGCACAGANCACTCCAACCCGATAGCGTCAAGTCC /&2%,)+,+:&#:;,5*)8/%19!,%*1/%;#<952%:27#%%&4.,#-1 +853_33_1583 141 * 0 0 * * 0 0 CCCGCGCTCCCGATAATATAATCACCGAAACACGAAGACCAACAGGCCCA ),+&#,)',$##2$),%2'+#$)2),#$(+#+##&*%(-%1%#(##$$2, +853_33_1649 117 chrM 7331 0 * = 7331 0 TCACCTAATCTGCATGCAGCTCTGTCNTCATGTAGGAGTTAGAACGAAGC %1.)#$$1%%$)#)$&);=1968:42!:8<:78;888<6688=<<9<:9< +853_33_1649 153 chrM 7331 37 49M = 7331 0 TCACAGTCAAAACAATAGGCCACCAATGATACTGAAGTTACGAGTATAC XNT[[[YTQXUVKHX[]ZMOZ]SV]X]\Y[\ZVRTZ]][Y]]VNQUWSU XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:37C11 +853_34_1182 77 * 0 0 * * 0 0 GTTAAGGGTGTTAGGGAACCCTANAAAGCCCGGGTTTCGTGGGGGCGGGC ;7;5*982;:/;,46::69<4<(!4295.6144&::<4*.-+%$#.#,(# +853_34_1182 141 * 0 0 * * 0 0 GGGAACATTATACGGCTTTCGCCCCCTAGACCGCACTGTGTTGGGCCGTT >>>:9<<>><;58987;::9718859:2;75'3%(720&14%6(,51-&& +853_34_1358 117 chrM 7792 0 * = 7792 0 CGCCTCGAATATTGCCCTCAGATCAANACTGTTGACCCTCGGGCCAGGCC 9/8<9;6:<8=,>=<<;=<<9:><>:!9;@=:>?<=>><=>>?<=;??<< +853_34_1358 153 chrM 7792 37 49M = 7792 0 CTCCCTAGTGATATGCCACAGTTGGATACATCAACATGATTTATTAATA MV]YU]YXXTZ]ZY\]]]][]]]]]]]]][[]]][WX][Z]]]]]][[] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_35_596 73 chrM 477 25 49M = 477 0 CGATAGCTAAGACCCAAACTGGAATTAGATACCCCACTATGCTTAGCCC !SSNPYYYUQPS\VSSRPPZ[Z!!NXX\VXLL]]XUMKXYRTRKLV\Y! XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:22G26 +853_35_596 133 chrM 477 0 * = 477 0 GGCTCCTATTTTATTACGTGTCCTTCTCAAACTGACAGCGCAATGCTAAG >978>8=9;>;:2>;;85=3;::=;::7:8:68)<5;859>?<>:<6<58 +853_35_669 77 * 0 0 * * 0 0 TTGTGCTGTCACGGCAAGGCGGGNGAGTTGGTGCGGCTACTCTCATCTGG #4(,,&5,'-2(&5'10&)&-&3!,)+.*9&););:,8)7&3<&,/1:)& +853_35_669 141 * 0 0 * * 0 0 TTCTTATAAAACCGCTTACCCCCTAGGTCCGAACATCTTGCAGGGTCTTG ,)&#<&38':&)-2/*4-'*+,5:0(3(+.+&,)9,&%1%*'(+.+-&&' +853_47_795 73 chrM 649 25 49M = 649 0 CCCCGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCAT ]]\]]]]]X]]YY]]KL]]]NO][X07]]VIRZ]Z"0]]]]RKR]KF\V XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_47_795 133 chrM 649 0 * = 649 0 CGGAAGGAGCGAATACTGAACCAACACAGGTTAACTAGGAAGAAAGTGGA >?@;;?>=A@A9:>;:>=<;=>::88<;=8=<:95>08=5.(364,)1,) +853_47_831 77 * 0 0 * * 0 0 TGGATACACGTAACAGAGGACCGGGCAGACTACTCGGGGGCCGTCGGTGG .)/'0(,&#*#'#)#(#(#*(#'%%1.3#$-2%$&/#$(#'%'%(##%+, +853_47_831 141 * 0 0 * * 0 0 TAAAATCTCGGATGGTTGCCTTGAACAAAAAGACAGCCCCGTCAAGGGAA 5A,&5,))%(()&,13(.9<2++8,>99*(%184,=/&5+)6/)0.&)64 +853_56_1228 89 chrM 8643 37 49M = 8643 0 TAATGACCCACCAAACCCACGCCTACCACATAGTAAACCCCAGCCCATG Y[]MKVY]]]]QT]]]YY]]]]Y]PN]]]]X]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:22T26 +853_56_1228 181 chrM 8643 0 * = 8643 0 CCCTGCGCCGAGCCGTCCCCCCCCCGACTGAACTCAGCAGATACTCGCAG (-5&(2)5(/&-:%&4&9%&-.1266:=:?<<?>>;??<:==<:?=?>;@ +853_56_1324 77 * 0 0 * * 0 0 GGGCTTTAACGCGTCGGCACGAGGTAAGTGGAGTGGCGATGGCACGATTC 5,(,)5+)57+94*,*3-#*4,2&2$2'(,2)-)22/)$23/1*)24'%$ +853_56_1324 141 * 0 0 * * 0 0 ACCATGTATGGAAAAAAAGAGTAGAGGAGGGAAACAATGAAAAACGGACC /6+58//.61366638/)&988).5::15578427=88&0:>;59:(6;< +853_82_2023 89 chrM 1195 23 49M = 1195 0 AGATAGAAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAACG XX]]VQXWSNT]]]WV]\Y]]]]]]]]]]]]W\]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,-1196,1S48M,3; +853_82_2023 181 chrM 1195 0 * = 1195 0 CTAGCTCTGTACGCGGCTTATGCGTCTCTTAGGCTCCCTAATTCTAATAC 75:5956654=71?9858;96;9>;;:?8:<=8=45762<?57<<>79;9 +853_83_197 77 * 0 0 * * 0 0 GGCAGATGATATGGACTGAGTGGGGGGGGAGGGGGGGGGGGGGGGGGGGG 8;95;6:96698;6;89:3=%(-*$&(+$&#%.''+(.-%-/5.*.*4/5 +853_83_197 141 * 0 0 * * 0 0 CCGTCTCCCGCGCCGCAGAGACACTACTTCCTCGCCGCGGTGCGCCGGGC /9;58179583997;5591<26;797=55:995$)&$'#-$(&&'(*(%& +853_112_119 77 * 0 0 * * 0 0 CCTAGGATAATACGCGGACAGGGGAGCTCCGGGGGGAGGGGACGGGGCGG 7)&8327,(41&&),%1/)%+242(1,)')&15,)&05#$50,$$87&.$ +853_112_119 141 * 0 0 * * 0 0 TCCCGGGACAACGGAATTAACAACCCCCGGGTGGAATCGGGTGGGAGGCG ))&)994&,/1(+-+.-('(02)145,.&42,#&).,&(-0.%,',%:(0 +853_112_253 69 chrM 1041 0 * = 1041 0 GAACGCTTATGGGGTCCGCTAGCTAACGCCGCCTGGCCAATAACTATAGT ;9;97857&:;6;&983;4=83/,::2=,8;7(&<;/8+275(/9-1&(; +853_112_253 137 chrM 1041 37 49M = 1041 0 ATAACCAAAGTGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGAT WTVVUWTQYWRMT][YTWNITY]ZSW]]]RU\Z\]]]YTWVSTWX\ZM> XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_148_1347 73 chrM 14085 37 49M = 14085 0 ACTCAAAATAAACACAATATATGTCATCATTATTCCCACGTGGAATCTA #$]]]]]]]]]]]]]Z[]]]][V\\[]U\[Z]KQ]YOQW]]QUYWWZTQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_148_1347 133 chrM 14085 0 * = 14085 0 TAAGGCCCGTGCCGGTCCGTCCAATGATATTGGAGGAGTTCCGGAGCAAG A=;@>>?=@@A@?A@>@A@=9?9<A@;9>>>>>7;=8<=;8;?;18?62= +853_148_1509 77 * 0 0 * * 0 0 GCTGGGTGAAAAGGCCCCGGCTTCACAGAATGTAATTTCTAATAGTCTTT -'-:+&1.,)&&=(=)?7=<=4&,>:(;,&<))))8)+(,'&(4&,(,3) +853_148_1509 141 * 0 0 * * 0 0 TGAATGTAAATTAAACGGGAGGAAAAATCTCCCCACAATTGAGGCCTTCC ./<&1=35>,/3(6,,1<3*)7,53)69<&(A<8+(;91).8&+7(:&<7 +853_157_314 77 * 0 0 * * 0 0 CTCGCCTGGAATTTAGCCATGGCTATGTTCTAGGTGCTTTGTTAGTTGCG 79();(1<))&2(5+&8&+.9-'198,',))&&7&:*,4)(6&2&/:&77 +853_157_314 141 * 0 0 * * 0 0 GATAGCAAAAAAAGGGGCCGAGCGCAAAAGCCGACCTGAGCACAGACGAA 9;:5461242#)#*1####('$$$##'#%#'$$%###/$%($#'#$$#+# +853_157_582 117 chrM 893 0 * = 893 0 ATTTTGATATTGCCTAAGCCAGGAGGATTATGGGGTACCTGATGTTGTTG 2&==93398<:46<@<:?:==6>:<<<=?=>;;<;A;;:>;;><::??:= +853_157_582 153 chrM 893 23 49M = 893 0 GCTTAATTGAATCAGGCCATGAAGCGCGCACACACCGCCCGTCACCCTC O/3]Y[12]PSUUY\]XXYZ\VY]]]]]]]]]]]][]]]]]]]]]]]\\ XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,-895,2S47M,3; +853_158_402 77 * 0 0 * * 0 0 GGTTGTTAAACCGTCCCGGGCGTTATCCACGTGTGATACCCGCGCATGTG 711&$(-)##.,&((&(4('83><-:94,'.;2&*:<0%&7,3#+02#(# +853_158_402 141 * 0 0 * * 0 0 TCACAGACCCGAGGAAGCTTCGTATATTTGCCACTAAGGGCGTCGGGGGA 5;&35,<55<8<6;<3646:618477::95<92=752071+2339-.#11 +853_158_569 69 chrM 6195 0 * = 6195 0 TTCGTAATTATATTTGTCGGGCATTATGAGTACGGAGGTTATTATATAGG 8>34:8.56,9/7<=-80.562,994:)3,<#%85(,#7&%,'#3#,#%& +853_158_569 137 chrM 6195 25 49M = 6195 0 ATCCATTGGCTTTCTAGGCTTCATCGTATGAGCTCACCACATGTTTACA $]\YYYQM\]\WX]\\MN][YQS[\WS\YV]]VV]]MFY\]XPSV]SGL XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:30G18 +853_216_501 77 * 0 0 * * 0 0 CCCTGGCCGGTCGGGTGCGTCACGCGCCTGGCGGAGCTCCTAGCCACGCC />61=+11:/5/+/(&/1'%#:3&;&93(';0$4&*9,&/+))2')65.& +853_216_501 141 * 0 0 * * 0 0 CTTTTAATGGGTCCCTCTCTTACAAGGCTCTGTTAATTTTTCCTTTCGAA 85<85,7=47;:627;<6<4<::445934*:5<2)$9&-$273#/#6-.* +853_216_648 117 chrM 1235 0 * = 1235 0 CGAGGCAGCCCATTGAGTTTGGTCCCCCTTAGTTACAGGATTTCCAGCCG +&'%(14'2,09:7(776;53=99/58>75;88784;/:8)884;7/;6/ +853_216_648 153 chrM 1235 37 49M = 1235 0 AAGGGAACGATGAAAGATGTATTAAAAGTACTAAACAGCAAAGCTTACC ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]SU]]]YY]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:19C29 +853_218_1907 73 chrM 1146 37 49M = 1146 0 TACCCTTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGG YQOTRVYOS[\Z[XX]\YOS]XW]]\Z[X\ZUZWZ\XVVZQPMKWTUJ> XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_218_1907 133 chrM 1146 0 * = 1146 0 GAATGGCTTGACAAAGGGAGAAACGCATATCCTGTGATGTTATTTAAGAG 5).5<9?642>9+;9<;;:28=4886909479&7,3;	+:,6'5,(&/ +853_219_184 77 * 0 0 * * 0 0 GCATTTGCGACCATTTTGGGGTTGGTGGGGTGGGTGGCCGGTGGGTTGGG /&3&,)/,$)/&)2&#%(:/+#,*&$+$$(&1)/&+1##'&'#-,)&'%- +853_219_184 141 * 0 0 * * 0 0 CAGTAGTTGCATGAGTCATGAGGTTGGGTTGTTGGCAGCTGTTGTCGGCT '*)%%,,##3,1+,,#'&)#+#/-),%(&+$)%#%$&(&/#&(#%#'$%$ +853_233_615 77 * 0 0 * * 0 0 TTATGGATTAAATTTTAGCTAATTTGGCCCCTATGGATAAGGAATCCCTA (7.1:154753447,222383647814041,3+,4.-/%+21((2)2'7) +853_233_615 141 * 0 0 * * 0 0 GCCTTAAATCGATATAGTCGCGGGCCCCAACCGGGCCGAGTACACTGGGC ;@),<%8)(&<(0)<&<)&53.*%/,5,6*/6;.)+>,%.,7,#,,*$%$ +853_233_834 69 chrM 8993 0 * = 8993 0 GGGAGTTCTAGTGGAGAGATTATTCGCCGCCAGCTGCGTTGAGAGATGAA =<<=;><:6:;<<3>=:=8>><<8;<=63;>99099&%,##&'2##%/$% +853_233_834 137 chrM 8993 37 49M = 8993 0 CCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCTTACTCA ]]]]]]]]]]]]]]]]]]]]]]\\]]]]]]]]]OQ]]VY]]SOVQ\]YS XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_244_474 77 * 0 0 * * 0 0 GATTGAGAAGGCTGCAAACGGCGAACGACCGGGCGGCCTAAAACCACGGA )15$&/&*,&,,(&&0.,&,07:)/1/4&))96&)'/&''.(+&1'&)'' +853_244_474 141 * 0 0 * * 0 0 CGGACAGAACGAAAACTCCTAACAACAGAGCTGAGCAAACCAATCCAGCC *$(5.+###%$$2*+'#$('/(#*$$$$0%'$$3',$(*#&'4(%$#/$$ +853_244_781 117 chrM 652 0 * = 652 0 GCAGCCACGAATGTCAAAATCTGGACCACTATACGGTGTCATAAATTCTT &24)57:,,<=892<?=>;9>989@=;>;:?7><<>;=7=86>>;:9><8 +853_244_781 153 chrM 652 37 49M = 652 0 CGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTT ZOE[\XROW[]ZQJW]I?T]]][]]]]Z]]][Y]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_255_146 77 * 0 0 * * 0 0 CCTATGTCCCCTGACGGCACGCCGGGTCACCGAGCCGGGCCGCGCCCGCC 5.)8&)'++7:',%'&&,(1)1/8'('%1)20#%,4-$.&$''(1(0(/7 +853_255_146 141 * 0 0 * * 0 0 GGGAAGAGCCAGGGAGGACTGGGGCTGGAGCAAAAGAGGCGAGGGGGGCG #$##$%###&##'#&##$###&#&$######$####%%$$/$'%$'#$$# +853_255_403 117 chrM 13900 0 * = 13900 0 ATCCTCAGCACATAAGTGCGTGATTACCGATTGTATCATCGCTCGGTTGT 130>7&9+9:-83?<09=>;85?>=78;<<=99;>)87;>;9;=>?<:8< +853_255_403 153 chrM 13900 37 49M = 13900 0 GTTGTATAACCAAAAACAACCAACATTCCTCCCAAATAAATTAAAAACA 7FFGW]]]RIS\]]YT\]SMKT\TW[\\]Z[]]]]]]][[]]YZY]]Y\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:41C7 +853_256_428 77 * 0 0 * * 0 0 TAATTCAAGCAGATAAAAGAGTGTGCGCCCACCCTCCAAGGAAATAGAAA 2=<66<=>6::3<,8;>:3<3825,:1:98897,057::24<986:+,:: +853_256_428 141 * 0 0 * * 0 0 ACGAAGCGGTGTACCTGGCCCTACGCGGAAAGGGGGAAACCTTCCCAAAT @?8<A:A969=<:71?;;<5==>81><1<&??:264@>>/=<-819><() +853_256_834 117 chrM 9813 0 * = 9813 0 GCCCTCTGGCAAACCTACGGTAAGTTTGCCATGGAATCTTTGGCGACATT ######$$##############$#&####$&$##&##########)#&%' +853_256_834 153 chrM 9813 37 49M = 9813 0 TGAACCCAAAAAGGGCTAGAATGAACTGAGTATGGTAATTAGTTTAAAC DL]TAFU]\TDH]]]WZ]\NU\VZVU\]]]Z]]Z\\Z]]]]WZ]]]WWX XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A34 +853_266_697 89 chrM 1002 37 49M = 1002 0 AAGTCGTAACAAGGTAAGTATACCGGAAGGTGTACTTGGATAACCAAAG ]]]SQVY]]\]Y[ZY][]]]]]]]\]]]]]]]]]]]]]]]]]]]]]]]# XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_266_697 181 chrM 1002 0 * = 1002 0 CAAGTCCACTTATATATGCGCATCGGGTTTTTGGTGGAAGGTTGTCATGT ::<;9796:::;9;;;<4>=2=;<;?=>?=;==?><6;:<:<>=@>;<=? +853_266_1092 77 * 0 0 * * 0 0 GAGCCGGAACGAGACAACCCGTTCTTAACATCCACCACGCGTGGGCGACG ;)2))/8%'10:712<67<3(39</68/5)6&')/170&49)6)//,)&& +853_266_1092 141 * 0 0 * * 0 0 GGCGCGGATTATTGTCTTAGCTTTGCTACCGTTATATGCGCTTGTCTTGT ,318925,37;9,999<52622989/:7220#3$247,',*1'##,1,#5 +853_279_1056 77 * 0 0 * * 0 0 TGTGCTCTTCCGTCATAAGAGAACCTTAAGCTATCACGGACACAGCGCCG :;76;:=;:<7::;<<<3<76;:<9=<5;87=3<=5@3<7388771:;5< +853_279_1056 141 * 0 0 * * 0 0 TGGAGGGTACGATTAGAAGAGGAGGCGGTACAAATAGACAATTCCTCACT =<;<<=;><:>;=<<=>=:<<>=;<;=;<==8<87<7@8=<9<9;:1:3: +853_279_1330 117 chrM 8561 0 * = 8561 0 CTTTTTCCTTCCCTTGCTTCGGTGAGCATGAGTTGCCTTCCGTTTTTTAT 7%,117%%154#2639#1#,5'+)23%($$1#$#1<$&>-<-'9)4).<+ +853_279_1330 153 chrM 8561 37 49M = 8561 0 AACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGTATTCACT JI[VXUU]]][\]]]WW]]]]\]]]]]]]]V]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:24T24 +853_292_158 77 * 0 0 * * 0 0 AATGTGCGTTTAAATATTCGGTCTTGGATGCTGATCAGCTAAAACGTATG ;=;;9;>>89=><94<;>9:;:896;;<8;3<<177=:5<6=:73<:9'9 +853_292_158 141 * 0 0 * * 0 0 AACTTTTCTGGCATTTGAGCGCGTTTTGGAACTGACGAACAGATGCTCCT ===9<<;<=<<>:<:=<>::7=9<=:;9:>;;98=58>;>4=@;:,;=1= +853_292_700 117 chrM 2055 0 * = 2055 0 CCCCACCACACCAGCCCCCCAAGCTTATACCCCGTACTCTCCTCATTACC 5.&/,#/++%):4'*/66:/.<6:82<6715=74+&>;<8:;>;=9<;9= +853_292_700 153 chrM 2055 25 49M = 2055 0 CACTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTTT U[XVKS\MRZS\]ZTXZX]WT[[]]]ZUUT]]]]WVZ]]]]]]\ZUU\& XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9C39 +853_365_890 77 * 0 0 * * 0 0 TGTGGGGGGGGAAGGGCGTCCGGCTAACGTCTCGGCGGGTGCGGGGGGGG <:7:=<;;;<9==><<;9<>:;>>;:;7<;<68(-#6+1&5,(4'2'.*2 +853_365_890 141 * 0 0 * * 0 0 AGAAGTCCGGGCGTAGTGTATCCGAGGGGCAAAAACTCTAACAACGGACT =9?=>7:9;A=9==??:<8?<=9@6<:>>8<?=>:=6:=<?8;<398:8) +853_365_1447 117 chrM 5643 0 * = 5643 0 ACCATTGGATTAGGCAGCCGTGGGGCATACTCATACGGTCTGACAACCAT $###$#$#(##&$$277:3079<60;993;8;5+97=7)9:;:(7<6 +853_365_1447 153 chrM 5643 20 49M = 5643 0 TCCCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTA NJUSYMK[RT[XXTY\ZZOT]]]XX\Z[XY]]]]]]]]]]]]]]]\]][ XT:A:U CM:i:1 SM:i:20 AM:i:0 X0:i:1 X1:i:2 XM:i:2 XO:i:0 XG:i:0 MD:Z:0C48 XA:Z:chrM,-5642,1M1D48M,2;chrM,-5644,1S48M,3; +853_368_1718 73 chrM 1149 37 49M = 1149 0 CCTTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGA (]Z\]SR]]]\Z]]]]]]]]]]]]]]][]]]]]]]V]]]WW]]]SO[[X XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_368_1718 133 chrM 1149 0 * = 1149 0 CTCCCCTCTCAGCTTGATTCCAAACGCCGGGATCTAAGGGTAATGTTCCG ;;A>A>?A;@@<><9A;6:?A:=1><<A@6=5515A<>8397:@1<6<3: +853_369_74 77 * 0 0 * * 0 0 AGCCACGGATCAGAGGGGGAACGATGGTATAGGAAGGGATAAGTCGGGGA 7:9875:8:7<69;78.$2/9&)6%0-$5)96&879'$8,&(/))6*2&( +853_369_74 141 * 0 0 * * 0 0 GGGTTCAAGCATGGGAAGTGGACCACAGCTCCCGACGGTCCACACCATCA =9756::884:54:791:47358965758589965&:94,&969;(5143 +853_375_367 77 * 0 0 * * 0 0 CCGATTGTCTTTCTGAGCGCACCGAATCAAGGTATCTACTAGCATAGCAT '+);,18&&&''),2&))4,%/1&5.1+-'/,'-1()))&'*)'+)&/&) +853_375_367 141 * 0 0 * * 0 0 GTTTTTTGGCGCGAGGTTTGCGCAGAAGGGCAAATTCCGGCAGCGTCGCG 5&')&(9<1,=?>:+,)6)&7,&(05/)1,',(0'&),&(6/7,,5,,44 +853_375_856 69 chrM 883 0 * = 883 0 GTTTACTTGAGTACATCCTCAAGACTGTCTTATGCCGAGGCTGCCTTTGA 8<;;>??83=>;63:@:?9=@<=>8@:?5?>8=1?;98;9<>4&40&2(% +853_375_856 137 chrM 883 37 49M = 883 0 AGAATAGAGAGCTTAATTGAATCAGGCCATGAAGCGCGCACACACCGCC ]]]]]]]]]]]Z]]]]]]]]]]]]]]]]]ZTV]]]]]]]\[]]]][]UQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_381_1334 89 chrM 556 37 49M = 556 0 ATTCGCCAGAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTTGGCG WLNHN\]]]]]]]]]]]]]]OJ]]]]]]]]]]]]]]]]\]]Z]]]]]]' XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_381_1334 181 chrM 556 0 * = 556 0 CCCCATCATACCACATAACACCACCAAGGCTCAAGGTGTCTTAATACCCA *%-#&2+,%'%#,&%&.%7;';=?>%=<?>68:?@,;=?>%)4@>=@ +853_381_1648 77 * 0 0 * * 0 0 TTGCAGACTAGTTTCCAGGTATATTTTTCAAAGCCTTATTTTCTTTTTTT 986+0<95:8;(>5<<)58?,4)8;<5&,9/),()35)-3&7(&832$&/ +853_381_1648 141 * 0 0 * * 0 0 AGAAACGATCACAAATAACCCAAGTCTCGCCAAGAGAGCTTGATCCGAGA 8:9:;<;::::;65&:178(:8:517:35$3385)958.$<578%7:7.) +853_383_962 89 chrM 865 25 49M = 865 0 GGATTTAGTAGTAAATTAAGAATAGAGAGCTTAATTGAATCAGGCCATG O\]SGKS[[MJ]]Z10[]WHG]]WQT]]]HI\\YBDWTW]XU\]]VY]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:8C40 +853_383_962 181 chrM 865 0 * = 865 0 GGCCAATTATTGCAATGGTATGTTGTGGGGCTGGGGAGGTTGAATCTCTG 5*;3<8)659?)@>?:(99>:7==<?5?;A=:<2>A<;:==<=:>;9??@ +853_383_1666 77 * 0 0 * * 0 0 AGCGTCTTACAGACCCAACTTGAAGCTTGCAGGAAGGGGCAAACCAAACA ,,('6:.6-&7,(=15&%&<&&1(/16',.(1&&8($$&&+&)76,5815 +853_383_1666 141 * 0 0 * * 0 0 AACCACTGAGTACGTAGGCGGTGCAACCGAACCCCGAGTATTACCTACTG 18$+&,#./,8#8('./99#4(58);.22,;,2,%6,%)(,.,*957)(' +853_389_1983 77 * 0 0 * * 0 0 TACCGTCTTTCGATTGACCGGTCGGTCGGGGGCCGGGTGTCCGGTTCCGG ,&9):88.&'&&/.&4&%4(6#$4531,)66,.2-51#'2/&'5845,8. +853_389_1983 141 * 0 0 * * 0 0 TGGAGCTACACCATCCCCTTAGGAGGGGGAAAACGTGGGGTGACGTGGCG 715;6741498/6459/6448/6573'569<98845/6:9$),4%.560( +853_390_660 69 chrM 1251 0 * = 1251 0 CTAAGGCAACGTATTGGTCGCCTTATGGTAATGGTACGTATAATTAGGCT >8A==;<<<>;;A98<;:<=>;9;=;;;;>;8<;;@5;:81=:894;:), +853_390_660 137 chrM 1251 37 4M1D45M = 1251 0 GTGCTTAAAAGTACTAAACAGCAAAGCTTACCCCTTTTACCTTTTGCAT ]]]!%\W]]Z]]]]]YW][ZY]]]]WU\]]]\]Y\]]\V]23]]]HFRS XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:1 XG:i:1 MD:Z:0A3^A45 +853_392_1916 77 * 0 0 * * 0 0 GCGCCGGGGTACAGTGCAAGCGCGAACGAGACGAATTTGGGGAGGGCACT :<=<<<>>;>9<28A;<:*;:=95889<.:8;>34;6)%+6;05&::1+1 +853_392_1916 141 * 0 0 * * 0 0 GATGCATATCCTGCAAAGCACCAAGGATGGAAATTTGCGCTAAATAAGCC @;@A?>A;?@A>@@<=9A>??=<;A@9>A?=:;?=>;?<<?;<962&6): +853_393_183 69 chrM 660 0 * = 660 0 TCAGGATGGCCGTAATAATGGTGGCGTACACGCGCAAATTCCTTATGCGG =>;<<=*;4-;+9':>$427:&972<)71=;*793<1<1:;:7/9=)7/; +853_393_183 137 chrM 660 37 49M = 660 0 CCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTTCAGCAAAC ]ZZ]\[]]]]]]]YZ][[[]]Y]]]]]]]]][]XV]]SGT\ULSXY]Z[ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_397_1746 89 chrM 9541 25 49M = 9541 0 CGCTACTCGTACTCATCGCATTCTGATTACCACAACTAAACATCTATGC DF8=*%8:ORJJNQOMD>LLOWUYMGGIQFNYV]SKPU]]VJGMFFVPJ XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:26C22 +853_397_1746 181 chrM 9541 0 * = 9541 0 GTCGTATTCCTTCCTTGCAGATATGTCATACATCCCTGCAATCAGACGAG ,5,+2.4.7/><1:777)5;78/97?:0<582/9<880;8;98;:7987? +853_398_593 77 * 0 0 * * 0 0 AATTTAACGTATGCGGTTTTCTCTTCTCAATCCTCACACCGGTAAGAACA (=714-?,:<,91)717878<7/9396=51,<<=,)/;8=5,:/8;7813 +853_398_593 141 * 0 0 * * 0 0 GACCCGTGGGCTCCACTGGTCAACGCCGTCCTATATGGCGGACTAGTCCT (,1&31,+//,&1?0,)(>91),,7(/0(1(3=/1>/)&83:5336:3-3 +853_423_1430 73 chrM 8093 37 49M = 8093 0 CTCAATCCAACAATGGCTAGTCCAACTTACATCAAAACAAATAATAGCT W]]]]]]]]]]]]]]]]]][\]]]]]]]]\Z]]]YW]]TKTO>=D?KXK XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:6T42 +853_423_1430 133 chrM 8093 0 * = 8093 0 CGGAGAACCCACCCGAGAGACATAGGGGCGAGATTCACCTGCTTTTTAGG >>5:<8<A<=:<=@<=5?:/=:8;7:=9<<87:<897:7891.=%;8/7; +853_424_115 77 * 0 0 * * 0 0 CCCGATACAGACCATGCGAATCGAGACGGGCTGTCTCCAGTCCAACCCGG 6>8:8<;>7?;;<,7>>;;8:<=16;:789549$%&6)'040$('%0''2 +853_424_115 141 * 0 0 * * 0 0 TGTTGACTAGCCGCAAGCTCCCTGGACAGAGGCAGTCTAAGCGGTCCGTT ;<<8<<>=9<=?:8:?:?8:A>;3;<=<8;<9?69>99;:;;77;:9/,; +853_439_1980 77 * 0 0 * * 0 0 CAATCAGTTTATGCAAGCTAAATCCCCGAGACTGAGAACGAAACTCTCGG ,<='0/71(/:.;2<<9:5>7?2<8<=9987;51?*=>:(7;<,()&:6/ +853_439_1980 141 * 0 0 * * 0 0 TGGAGCGATTTAGACCGTATTTTAGTCTCCGCCGATAATAAGAGCAATCT 952;8:98452>4=9;:0=3)6/76-666=777+<4::&86.;'7;:+5' +853_440_379 117 chrM 8797 0 * = 8797 0 TCCGTCGCGTCTCACGCCTCAGGAGCACTTTGGGACGCCGCTATTTGTGT 6<=8:7:366/<70;+5:9;7:;:<:899=89<8;:79><3:<8:5<8=9 +853_440_379 153 chrM 8797 37 49M = 8797 0 CCTTACCATATATCAATGATGGCGAGACATCATCCGAGAAAGCACATTC OOR\KGMS]SU]]ZY]YOQJQ]]\]]]]]]]]]\]]]]]]]]]]W[][X XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:21A27 +853_443_704 89 chrM 8985 37 49M = 8985 0 GCTGCTGACCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCC K[ZHA@@A!.]]\]][]]]]]]]]]]XW]]]YT\]]ZX]]]]]]]]XY] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_443_704 181 chrM 8985 0 * = 8985 0 TGTTCCTGTAGTATATCACTTTTTTGCCCAGGACGGTGAGACACATGAAG 7:/><:;,?:::>;>=;:>>><9@>;>8A;=?@A@=?=?<=>AA>>AA<@ +853_443_1353 77 * 0 0 * * 0 0 AGCCGAAACGATTGTCGTGTAAAGGCGTCCGCCGGGTCAGATCGAAACCG 921/5>7972<889;:;9:3?>5;/95<509=7.878/4/;:.28;9/3( +853_443_1353 141 * 0 0 * * 0 0 GACGGAGGAGGGTAGTGCGGGGGGCGGGCGTGGGGCTTGAGAACGGCTCA 95:19@9979:<4,82>02:3;5.46:65:5<95<7:;7;:>9*;:<:82 +853_458_262 77 * 0 0 * * 0 0 TTACCTGCCTCTCCCTCGCCACTTGGATCGCCGGCTGACTCTACATTACA <;:=7:;;<8<=8;=<</<9?<9::<<:;9;;84:91#2&%,-($&&%*% +853_458_262 141 * 0 0 * * 0 0 AAGTCATCTTTCCGGGGAACCCCCCGGACCTTCCTTCTCCCAACCAAAAA >>;>=;<4><=>5;=;>2=>:>1;<><'::8>(=:?5%<=9;29<<=-0< +853_458_615 69 chrM 5320 0 * = 5320 0 TTGCTGTTACTGAAGTCATACCCTAAAGCTTAGTATGCGCGTGTGTCAAG 97899::;:<<:;;;<::9;;77:;;/8:=<6;86;34;;8695;:+5:< +853_458_615 137 chrM 5320 37 49M = 5320 0 TCTTTAGATTTACAGTCTAATGCTTACTCAGCCATCTTACCTATGTTCA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\\]]Z]]]YY]]Y][V XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_489_665 77 * 0 0 * * 0 0 GAAGAACGAGGTTTAAGATAGCGAAACCGCGACACGGACGGTAGAGTGGC ?::=-->4%&22=8)3<1;7$//6#)=(:%%<2(*,4,;7'92832:$9) +853_489_665 141 * 0 0 * * 0 0 ACGAGGAGATTAAAAAAAATGGGGTTAGATTAGATAAGATGAGAGGAGAG =>?><@=A<@@<?>>=:=:=;24&&)00+&$(4:%%'(4-#+16#-'1.$ +853_489_1193 117 chrM 5045 0 * = 5045 0 CCGGGTATAATCCATAATGGCGTTTTCCACTCTGCAAATACAGTAAACAG 85@06;<>)=55>29<;?)=>:<:===>5=>=>,><=?2=?<>>>=>=<= +853_489_1193 153 chrM 5045 25 49M = 5045 0 GCATACTAAGGACTGCAAGACTCTATCTCACATCAATTGAACGCAAATC RMO]UZ]]]]]\\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:16G32 +853_557_600 77 * 0 0 * * 0 0 TTGCCCCAAGATCGATCTTGTCCCGAAAACGTAAAGGGCCCGGTGCGAGA &+&))(51(,1&&:'7:&)=.8),/5034&.&31&0.&-/$3'&)&1&1, +853_557_600 141 * 0 0 * * 0 0 ACACGCCGCAAGTCACAACGAGAAGGCTAGGGACAAAAGACGGAGCAAAG 7-0'%()1&'&/65'1'/+,.*&&*17165:+0#-+'.&+''$-,$-&'# +853_557_1176 117 chrM 12324 0 * = 12324 0 GTGGACGGTGACGGTAACCCCCAGCCTTCCCAGGAAGCATATAGTGGGGG ;,<<=95:3==7<9@?9;9><<?:=A5@>=?6;<@=8><>:9:>79>@;> +853_557_1176 153 chrM 12324 37 49M = 12324 0 GCTTCATCATAGCCATAGCCTGATTCCTATTCAACACCAACACATGAGA []]]]]]]]]]]][[]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:10G38 +853_558_962 89 chrM 2448 37 49M = 2448 0 ATGTTGGATCAAGACATCCTAATGGTGCAACCGCTATTAAGGGTTCGTT \UV]]]]TS]]]XZ]]XFN]]]\]]]]]]]]]]]]]]\]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_558_962 181 chrM 2448 0 * = 2448 0 CTCCCCCCTCGGGGCCCTAACCTGCCGACCTCGCCCTATCGTTTACTCCT .)(0908:,ᭊ$979'%<6.*772<<;>@=?=>;<>?=>>>==>?> +853_558_1569 77 * 0 0 * * 0 0 GCTACACACCCCCGAGCGGCCGGTGTAGTCGACGTGCGGAACGGTCGTAA (?16:=57:=779:995@=9?<?:>3<??=?339@?@;<@3?:8>><53? +853_558_1569 141 * 0 0 * * 0 0 TGGGGGGAATGCGTAAAGGAGGACCATGCCTCTGAGAAACACGCGCGAGA &&(?(?(8><;;;;<=;<7<;;8<:9;<88=<:<=::?8,6658/:,181 +853_563_1263 73 chrM 8090 37 49M = 8090 0 AATCTCAATCCAACAATGGCTAGTCCAACTTACATCAAAACAAATAATA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]\X\][VYZSFM\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:9T39 +853_563_1263 133 chrM 8090 0 * = 8090 0 CTCGTACTGCGTAATATACAACCCCACGTCCGTTTGGCTTAACAGGAGCT @A>=?A@><?=A<==@A==?>>=;==>:1<<:?=<=<;=:?=<&:3<3): +853_563_1776 77 * 0 0 * * 0 0 ACCTTGGACCCCTCCGGCAGCATCGGACAAGACCGCTGGGTGGTCTAGGG =A><?@A:AAA@<>AA9@==?96AA=69;<>8A3>;86&?:;6&<>7??< +853_563_1776 141 * 0 0 * * 0 0 GGTCCTGCGGGCGGTTCCCAATTTCATCTGCCCGAACATAATAGGTAACC @=?=A>A@A>A?>@>>A@>A>?>1@>>>5@?@@8>?@&8><>97(:9:5) +853_584_1986 77 * 0 0 * * 0 0 ATAGCTTAACCGAATGCTTTAATAAATTTGCTGTTCTGAGGGCGTTACAC ,:)155*-9#7,;,)'232.:1(4,7#$3#97$%$,''+$,2(##,#%#( +853_584_1986 141 * 0 0 * * 0 0 ATGCCACCGCCTTACTATCTTTTTTGCTGACATCACGCCGTCTCTTGGTG ,#$)*)(($3,))$&#,(&#*))&$##&#(%+&'+$,,$2$&(#&#+,#$ +853_585_542 65 chrM 1916 37 49M = 580 -1336 AAAAGGAACTCGGCAAACACAAACCCCGCCTGTTTACCAAAAACATCAC ]]]]][]]][]]]]]]]]]]]]]]]]]YS[]]]\]]\MS]]]\TW\YTO XT:A:U CM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_585_542 129 chrM 580 37 49M = 1916 1336 AGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAG #(]]]]]]]]]]]]]]]]]]]]]]]]Y]]]]]]]]]]VV]]]Z]]YR\] XT:A:U CM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_585_1153 77 * 0 0 * * 0 0 GCTCACGCCAGTACCCCAAAGGTCAAGCCTTTCAGATTCCGGCCTGGTTC 87?><89<==9>868=95:49<>7;:96<,:=;-1::::64;58/9;;)1 +853_585_1153 141 * 0 0 * * 0 0 AAGACCAACGTAAATTATCCATTCGTACGATGCCCTGGGCATTGCATTCC <>689<?9>59781>9956245:44?6,16=466;77615206+=12$#, +853_611_981 77 * 0 0 * * 0 0 GACCTGAGCAGCAGTCGCCTGGAGCAAGCCGGCCGATATAAATCGATGCT 85275/655287&4<7<5889<176837797:835.6&44427/'48$71 +853_611_981 141 * 0 0 * * 0 0 GCACGGCAAGCGGTACGGGATACGTGAGGCGCGGTAAGCAAACCCGATCC ;=9===@::A><;<6><=;:@8;;==8<?:<<==<<3=<&>55=9;38=; +853_611_1451 69 chrM 593 0 * = 593 0 TAATAGCAGCATTCAACTTTCCTGACCTTTACTACTACCGAACCTATGGG 28#'%)5/,)46%-#28,4,/;00,'6,/'-;4%(#9,###:++'.9*## +853_611_1451 137 chrM 593 25 49M = 593 0 AAGGACTTGGCGGTGCTTTACATCCCTCTAGAGGAGCCTGTTCCGTAAT !S]]][TGDQ]WKRZWVRPLPYX[ZWTENZWXEFUX]PFRY[UUVS\QD XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:44A4 +853_626_841 89 chrM 10675 25 49M = 10675 0 CCTCCCACTCTTAGTCGCACTAATCTCTATCCAAAACCTAACAGGCTCA R]]]XZ]]]]RLZ]]]]]]]\T]]]]]]]][]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:15T33 +853_626_841 181 chrM 10675 0 * = 10675 0 CCCACCCGCCGTTCTAGGACGGCCACATTTTTATTAAGTCAGCCGGGATC ,)4,(85:>=?6@6>=7<=<>;>=<;?=A=<>>AA>@>A<>@?@A@?@AA +853_626_1431 77 * 0 0 * * 0 0 TGGGTCAATGCCCTATATGACATTAGGTTCGCGGTCGGTAACGAACAGCA 11-/8<:967:;959<<:5:<21781187057585;;*6-5$%8,2&%9$ +853_626_1431 141 * 0 0 * * 0 0 ATGTAGGTCCCTGACGGCCCCACGGAGGAACCTTAGCTAGGCCAACAGAA >5<:5897:<;4==:;7>;9;<979>89?<7;;:<9:6<49;8644.1+$ +853_628_1041 77 * 0 0 * * 0 0 TGAGCAAGACCCGTAATCTACAACGACCAGCGGTTATGACAATGTATAGC 978:5,7295,/889'529//,,:55227($128:'9*83,4&29&,%57 +853_628_1041 141 * 0 0 * * 0 0 CTATCGCTGATTTCACAGGAATCGGTCTTATAAGTTTGACCCCTTTTTTT <9)9<7839<:>/<<;>3'A9<36=<9$#9<8((<=8'&;97'7>;#2(8 +853_628_1976 117 chrM 620 0 * = 620 0 CGGACCCAGCAGTGTGAATCTGGGTAATCGCGCTGAGTGACAGCTCGGAA -&-,&&$9/84359:0;=1<7:::8?>.<9<:<:8A869=?=<;9=:<@< +853_628_1976 153 chrM 620 37 49M = 620 0 CTAGAGGAGCCTGTTCCGTAATCGATAAACCCCGATAAACCCCACCATC ON]][RQ]][W\]]]RR]]]YZ]\\]Z]]]]Z]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:17A31 +853_630_585 77 * 0 0 * * 0 0 TAGTGTCTTGGTTCGTGTAGAAGTGCCTGGCTTAGCTAAATCGAATTGCT 15/,/(/))=&,)>,):(>:<=/,)/3>:,,49/(6)/;/',.11.+9'4 +853_630_585 141 * 0 0 * * 0 0 GGCTGGACTATGCCGATGCGCGGGCACGGAGGGATCCGGGACCGGGAGGA &#$%#)%&#%#$$&(.##$##)-$&%%##&&.#&#$&-$#&'+'#$,,$& +853_630_1363 69 chrM 2399 0 * = 2399 0 ATAACAAAAGATTGAGGCCCATATTAGGTATTACCGCAAAAGGTGAGACG A@A=AAAA>A?@><?>@AAA8=:A@:?>A89:@>?=<?=@8A;;=59@8A +853_630_1363 137 chrM 2399 37 49M = 2399 0 CGCAATCCTATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCG ]]]]]]]]]]]]]]]]]]]]]]]]]\]]]*,[]]IEZ]]]V[]]/1\SH XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_648_1618 77 * 0 0 * * 0 0 GAAAAGGGGCAGAATTTCGAGGGGAGTTAGGGCACAATCCCGCTAGCAGC &?,//&6(=77)):,)7.)933<)4%=:-8,831885//@3@:154',&3 +853_648_1618 141 * 0 0 * * 0 0 TTGATCCTATGCGGACGATTCCCGCGCTTCTGCAGTTGAGTTTTTTAAAA 1/(,/3<)+7%'/,%'&1)'09';/5.)%,)1&*111&+&5&0$4%$581 +853_649_292 117 chrM 1156 0 * = 1156 0 GGAATTCCTGGAGAGGGGGGTTGGGGGGTTGAGAAAAAGGGGGGTTGGGT ::4572;408<;82=:;?::5;9=:<::98=<57:<;;>?;;=>:;;>9: +853_649_292 153 chrM 1156 37 49M = 1156 0 CACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGATAGAAAT VV]XR]\]]Z]]]]]]]]]]]]]]]]]]]]\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_669_616 89 chrM 8554 37 49M = 8554 0 TTCTACTAACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGT YKKZ][YXT[\]]XZZYSM]]TNZ]WUXZ]]Z[]]]\TY]]][Z]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:31T17 +853_669_616 181 chrM 8554 0 * = 8554 0 GCCGAACATGCATGCAGGTGGTCAACTGTTCCTGTAGTATATCACTTTTG 3;>8==8=;>:A?:>A<@9>A=?=@<9<?>>A?@@>@@A>@<@>>=><AA +853_669_1548 77 * 0 0 * * 0 0 TTAGCTAGACATTAAACCATCCCTCTCATCTCCGGTTAACCCCGCCAGTT =;=<<=<<;=61:977/7;:96::<8.7<8;39:;976;;63)9;1+2:1 +853_669_1548 141 * 0 0 * * 0 0 TCGGGGACCGCCGCGCTCTGGCAGAGAGCTCCAGGGCGGGTGCCGGCAGG 8<977;>:=:;=:9><:9<;795<65>2>;;99=9/<4<8113/78,((& +853_678_1204 77 * 0 0 * * 0 0 GCAACCCGTACAAGTACAAGTACAAGTACAAGAACAAGAACAAGTAAAAA )=1=89;35:6:=:6;9A<5361?>1/6/=<'/;,A=&,:&>=/(5&A7& +853_678_1204 141 * 0 0 * * 0 0 CTTAAGAGAAAACCTGCTAGCAAACAAAAATAGGGGGGGAACAGAACGAG 737,88957/39486691$92<:77<:1060:9),4&/)),)(').4+,' +853_678_1908 69 chrM 14105 0 * = 14105 0 TAATAGGTCGATAACGTTAGAGACGTAAGAGGAAAGTAACTGCCGTCATG 8@?:57<:::?;=><=:<?:@=?>9=@=97?;>=7<7?:66<:;:9;=83 +853_678_1908 137 chrM 14105 25 49M = 14105 0 ATGTCATCATTATTCCCACGTGGAATCTAACCACGACTAATGACATGAA ]]][]]URX]]]WV]]UO\]]]ZXTRYNQX]]WVPNTOVXWUSRDLWEN XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:37C11 +853_718_1061 73 chrM 1329 25 49M = 1329 0 AGAGAACTTAAGCTAAGCACCCCGAAACCAGACGAGCTACCTACGAACA ]]]]]]]]]]]]]]]]]]]]]]]]]]]]\Z]]]]]\V\]]X\ZUSU]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:43T5 +853_718_1061 133 chrM 1329 0 * = 1329 0 TGTCGAATATGCATTAAATAAGACTTGGCCGACTTGAAAAGTGTTGGCTT >A><@?@>@=>>;=<>@===<?=;>@A<=9:>;>=6==8<89:5>8>>;< +853_719_183 77 * 0 0 * * 0 0 ATTTTAGTTTACCTTCTTGAGTTCTACCTTAAACTTTGACCTCCCACCCC )/31.$%5'/#)',4#)'+$&7%%,&)#&&#%($$$$$%###%$'.##)' +853_719_183 141 * 0 0 * * 0 0 TAGAGAGCACTCCAGGGGAAGGGCCCAGAATCAAATAACAACTAATAGAA 99387)&%.,./'%682&.53/$)*65-440/#%$1$##.&$##2#,%$, +853_775_1932 73 chrM 5645 37 49M = 5645 0 CCCGAATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACT ]QHY]Z[TDO]]]][[]]]][]]]]]]]]]]]]]]]YY]\]]ZOKZUW] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_775_1932 133 chrM 5645 0 * = 5645 0 GTTTACGCGTCCCATTTAGCTTCGCCTATTTTCCCGTGGAGTGTCACCCA ((>3,,(/7&(A,3:5('4&<<?3;/,;8=()7@=:(3556(9:>/1317 +853_776_924 77 * 0 0 * * 0 0 GGATTGTTACGTGCGCCCTATACTGGAACTGACCAGTCATTGACTGGAGA -212<+87/3582?/4731,<2(A:956/<3148*:7/28069392;:7/ +853_776_924 141 * 0 0 * * 0 0 GTGGGGTTAAATAGTAGAAGCGCGGACAGGTCCACGTGGAGCGCGAAGAA 88;9855?888?<.;=:54875'67+1#9661#474.5374:2*%88 +853_815_1179 77 * 0 0 * * 0 0 ATTCAATGGACTAAATCCGGGACCGAGGCGCGTCTGGCAGTCGACAGCTA 67827:>5597:=:<6<,224348025,71:879724,2(7/29)92222 +853_815_1179 141 * 0 0 * * 0 0 GCGGACTAGAGACGTCAACTAGGAGTAGCCGAGTTCAAAAGGGCAAAGGA <'#37,/*;1;7,;45-738,(/3,+.%21:/&93('(+7#*(,8(*(&/ +853_816_193 69 chrM 2616 0 * = 2616 0 GTGGTCTGAGTCAACCTGTAGATGTTTCGTGCACGATAACCCAGGGATTC ><><<;<@;9;>;=::>:==8<::=8>7<<:</=<8=@<?878>?<6?<6 +853_816_193 137 chrM 2616 37 49M = 2616 0 AGAAGCGCCCTCAAACTAATAGATGACATAATCTAAATCTAACTAATTT ]]]]]\]]]]]]]]]]]]]]]\\\]]Y]]]]]VY][X]]Z[NL[WMQT[ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_827_2017 89 chrM 5150 37 49M = 5150 0 TTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTTCT FCHRRSLJSMOW\\Y[]YZOIDI][\]]]]\Y[Z\]ZUUZ[Y\]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_827_2017 181 chrM 5150 0 * = 5150 0 ATTTCGAATCGCACGCGCACACAGTTCGAGGATCCTCTTAAACGTTAGCG ++6=<9;<8<7935;5480<::;<;::8;8;7994=<8?:=;8;>::8?< +853_828_1138 77 * 0 0 * * 0 0 TTAAAAGTCATGAGCGTACAACACGTGCCATCTGTCCTTAATACCTATCA &)&$&)&&&&)&&%&&&&)&'&&&%&%&&%%&#&&&&&&&&&&%$&&&#& +853_828_1138 141 * 0 0 * * 0 0 GCACTATCGTGTGGCCCGATGTCCGGTCCTCCTCTCGGTTTTGGACCTGT &+&&)')$#,&,#&&')&%&'/&$$'#####&##%$$###&&##&$$### +853_843_799 73 chrM 16042 37 49M = 16042 0 GAAGCTGGACTTAAATTGAACGTTATTACTCCGCATCAGCAACCATAAG ]]]]]]]]]]]][\]]]VT]]]YZ]]]QR]]]]W]]]UV]]]OL]]TQT XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:27C21 +853_843_799 133 chrM 16042 0 * = 16042 0 CTACACCTGCGTATCGCCTCGAAAATGCTGTCACCTTAAGCACGTTTAGG @>>=A:AA=A9A>@4:=>:8:2?:@23;>;;9=1<=;=933'58>;9>:6 +853_843_1357 73 chrM 13593 25 49M = 13593 0 TCCACGAGTAACCTCTAAAATTACCAAGACCCCAACAAGCAACGACCAA ]]]]]]]]]]]]]]]]]]]]]\]]]]]VU]]]XJQ]]\UYYXTOX]ZQN XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:1 XM:i:3 XO:i:0 XG:i:0 MD:Z:45T3 XA:Z:chrM,+13593,49M,3; +853_843_1357 133 chrM 13593 0 * = 13593 0 GTTTGCTAGAGTCGTATGTAGTCGTCGTTTCACGTGACCGGTCTACACCC >:AA8=?:??:?@>@?><>8<;<:>31=>:8(=8<74=,9;?5;724>48 +853_844_231 77 * 0 0 * * 0 0 TTAATTCTAGGTTTAAATGGAATTAAGATCCTGAGCCGGCCAAACCCGGG &&8151/>,/,/8,(?<=&('(?/;8&8))<?11=39%718,$,./9*89 +853_844_231 141 * 0 0 * * 0 0 GGGGGACAGGTGGAACTGGTAGACGGTACAAGGGAGAGCGCAGGGGATCA 4289*5)*(/(/+;=$/806&&*76&,.19&4754&2/9/92>3;)11:, +853_844_634 77 * 0 0 * * 0 0 TCTATCCACCGAAGTCAGTGTCTGAAGTCTTAGACACGTTCGAAACCAAT 7#56860817:11777)66,9&>7%;188/87,9&5608#9.764682%0 +853_844_634 141 * 0 0 * * 0 0 TCGAAAGCTCAACATCATCCGGCAGGGCGTAAAACTGGTCGCCCATTGAA >A;887A=2@9>;.;<67,;?::2:<;9#?<97/7<944:;):&*>90,6 +853_877_1974 77 * 0 0 * * 0 0 TTGCCGTGAGGCGATTGTACCAAGATAAAAACAAAATAACCTAAAAACAA *,*-4'#)74,',)(*##,#&#+#%##&#$'##%##)(#$%##$#(##'# +853_877_1974 141 * 0 0 * * 0 0 GCGTCCGCAAGGCGCGGAGCCTGAGAAAATTAGCCCGCGAGAATGACTAT 76187559,719324834789;;285501;<<65:<<:9;;99=<830+: +853_878_1093 69 chrM 2417 0 * = 2417 0 GGTTGGAGCGGGATAGCAAATGAGGATCCTGTCACAATCTCCCACTCCGA @@/&3,(,,5533/161?@57/1,3>3<<8>53)65=1)735,1A<;:8@ +853_878_1093 137 chrM 2417 37 49M = 2417 0 TCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGATCAAGACATC OZ]]]Z]]YWI8J]]TJX]]N;K]]RAN]N;3@XZH9=NYH>T]UE!/X XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_887_1933 89 chrM 11695 25 49M = 11695 0 CAAACACGGCTCTCTCAAACTTTTAAAGGATAGGAGCTATCCGTTGGTC W\]]UJN][WZ\]]]OR]]]]]]]]]]]]]W[]]]TQZ[]JCQV\]]Y] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:6T42 +853_887_1933 181 chrM 11695 0 * = 11695 0 GGCGCCAAGCCGTCCGACGACACTTGCGATGTGGGGACAGAGGGTGTGAA ))%,&))3#=4:=;<=:>8<:9=;?@<=<<>?A==;9<:><<<7@>>?4< +853_888_1016 77 * 0 0 * * 0 0 TACGGGGGAAGGGCATCCCGACGTTCAGGGCTCGGCACCACCCCAGAGGA &(,,//6)))'<&/9&')/,,)(,&,&&9&<)/'3,),/&&)7:)(/),/ +853_888_1016 141 * 0 0 * * 0 0 TGAAGACCGGGGGTCCTATGATCAACCCAACCATGAATTGTCACAGACCG &.+/)(-#'('&5#405$2220&,/03$0+)9$(#)4%%&&-,#&#),'# +853_943_830 77 * 0 0 * * 0 0 TATTTTTGGAGTACCCTCCTGTACCAATAAACGTGGCCCCGCCGGGTGCA 61)5/6,34'20)%@#)#<%#$<)6+33&6&')4&0'0*(#'215.$'9/ +853_943_830 141 * 0 0 * * 0 0 AACCTACTATGCTCATGCTGGAGAAGAAAAACACCGGTGCCATCAAACCA (>,5+''#1):,#>#10#%2:%$3&(4#.#..#*39(#':6,$'%))##4 +853_944_156 117 chrM 2054 0 * = 2054 0 TTCGATCAGGGTACGACTGTGGAATTTTGAGTACTGCGTCTGGGACATTG :<3><=.:><?19>99.;>;67:>==<=A=?;::>=8<??>>>A<<==;; +853_944_156 153 chrM 2054 25 49M = 2054 0 TCACTTGTTCTCTAAATAGGGACTTGTATGAATGGCCACACGAGGGTTT PV]]\XV[]]]X[]]]]]]]]XW]]]]]]]]]]]]]]]]]]]]]\]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:10C38 +853_946_129 89 chrM 7799 37 49M = 7799 0 GTGATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTC ORU\]]\\V[]]]]]SS]]]]]]]]]\]]]]]]]]]]]]]\Z]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_946_129 181 chrM 7799 0 * = 7799 0 ACGCCACGCAGCGTAACGGCAAGCGCGGGCTCAGCACGAGACCTTGCGCC '&($%,4().)8%.4::%$'492/(88.$0:<,&,=7/.,7,$',:;<:8 +853_946_1345 77 * 0 0 * * 0 0 GCGCCCGCCGTCGGGCTGAAGAGGTCGGCCCCGACCGCCGTCACCACCAG 8386936:688649:8;80:8#,#/,#1#-3#,#)4)2#42)&&12'2%/ +853_946_1345 141 * 0 0 * * 0 0 TGGACCCGAATCCAAGCAGCCTGCGAACAAGGTAGGCGCCTGGTTAGCCA ?A<:<<A:=<:@6<><@:=>1@=<==<4:>:=<:>985::685;:2689; +853_967_1892 77 * 0 0 * * 0 0 TATAATAGGTAAGTTCTGCTCGGAACATATTTTACCCCATTCTGCCTACC 8;64;9:878<=<9;:8>5:;9<>:;>769&;1://6&8;):1890:471 +853_967_1892 141 * 0 0 * * 0 0 TCGGGCAGATGGCGTCAATATCCTAATCCCGCGGAGCGGGCAGTACGGAT :>;<<<@==;<<<>;2-#8>87'9><*%=@271=A6//=;)7,;=1).:5 +853_968_485 77 * 0 0 * * 0 0 CCCGGTCGTCCGTTTGCGGTAAACGGCAACACAAAAACCCCAACCTTACC <=?;>==@<;>;<=><<?:<=?>=;?<>>=:><>=>7;>>7;8<::8:>< +853_968_485 141 * 0 0 * * 0 0 GAATGGAGGCGTGCATTTGAAAACGAGGCCAGGAAACTTCAGTACAGGAA =<:@<;:>@AA;>A9?8===<=>9<4;=7:2==9;94?@>.,;&;,=<&0 +853_968_835 117 chrM 7621 0 * = 7621 0 GTGTCCGCGCCGGAGCCGATTAAGGATATTTTCCCGTATCCATGACTTAT -986=;>48<==:<==<5<<9>::<=>>8<;>;?>><>=@:>:?<:<;A6 +853_968_835 153 chrM 7621 25 49M = 7621 0 TACTACGGCCAATGCTCAGAGATCTGCGGATCAAACCACAGCTTTATAC ZLCP"!ATX[NN]]]RR]]]Y[]]]\]]]]SS]]]YZ]Y]USVY]UU]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:8T40 +853_968_1657 117 chrM 1985 0 * = 1985 0 CATAACAACATTCGGTAAGGTTTGATTAAAGTCAGCTCGTTGTTGGAAAA &%%)&')##$*,#$#$(#####,&#*%&$+##36<6<<8;99<9<88::; +853_968_1657 153 chrM 1985 37 49M = 1985 0 GAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGGCCGCGGTATCCTA \TZ]Z]ZTY[[[]]]]Z\]]]]]]]]]]ZY]]]\Z]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_985_616 89 chrM 231 37 49M = 231 0 CCCCACGGGACACAGCAGTGATAAAAATTAAGCTATGAACGAAAGCTCG ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:45T3 +853_985_616 181 chrM 231 0 * = 231 0 GGTGGGTTGATATCGCGTCACTTAGGGTGGTAAGGTATGGTATCACAACA )$)($$#1&,&,#)#1&6=3;<=?;568=:;>@868@@@4>=@>>8A?@= +853_985_1608 77 * 0 0 * * 0 0 TGTAAGCTATTGATTATACGCCCAGATGGACAATCGACAGGAAGGGAGGG <:99:7<::<:>,<<;=:<97?5/:/;:2::::58<921;>:::<=19=< +853_985_1608 141 * 0 0 * * 0 0 CCTCGAGTAAGGAAGAGAGAAGGGTACGATTATAATCCTCCCAAAACGAG @798;<9::<9;<:=?9>8;=9:97?68?=;1<:58:3/97%2)%-)#&# +853_991_1890 73 chrM 3733 25 49M = 3733 0 ATGTCTGACAAAAGAGTTACTTTGATAGAGTAAAACATAGAGGCTCAAA ][]RO]]TDABJVW]UU]XURWUR]]]]]SO][IHW1(NUSD!!H\6$: XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_991_1890 133 chrM 3733 0 * = 3733 0 AGGGGGGCAAGTTCAGGTTAATATATAAGTTTAGCCCAAAAATTACCTTC >,>)&,(->>.32(<@>1&=)/:/)>/&+((>,;)3;&1>=;,%63=7:9 +853_992_1006 73 chrM 5367 23 49M = 5367 0 CATCAACCGCTGACTATTTTCAACTAACCACAAAGACATCGGCACTCTG ]]YT]]W\\U]YOT]]]]]]ZV][]]RT]][Z]][]][\ZUSYTRXQPY XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,+5367,49M,3; +853_992_1006 133 chrM 5367 0 * = 5367 0 CTGAATCAATGAGCCCACCACCACCCAAATGCTACCTACAGCAGACAGAG ###(#$#$0###1(###+,'##*##%#%##&##0####$&'#*%*'%#+# +853_992_1044 77 * 0 0 * * 0 0 TGCGTCGTGCGCTACTCCGTATTCCCCGGTAGGGGAACCTCGTAGGACGG &/5-<)&(':4+<3838&&4&7'1-17&,/11044//$&,%8,%$4,-%# +853_992_1044 141 * 0 0 * * 0 0 ACAGAGGCCCACCTGCTCACTCGGACAGCCGCCCACGATGAGCACTGCTC :70.7143#46<257:>/,488938=96958:/75;29)715689/8(&+ +853_993_143 77 * 0 0 * * 0 0 CGGAACGAGGGAGTATAAGCATAGTCCCGCATCAATAGACCTATGGATTT <788::9:8:77>3,6;<768:?:39<=:611>9751:;8:55895(>;3 +853_993_143 141 * 0 0 * * 0 0 CGGGGCTCCAAGCTCCCCATCGAGAGACTGGGGTCCGTACACCAGACTCG ;759<65;<>97<::==@/8;6;6<:;85==1::;;:97<,9=937:79: +853_996_488 77 * 0 0 * * 0 0 TGCCCCGTCCACAAAACTCTAGACACACGCCGACCTTGGCAAAAGAAGAA .&'6,#*<(%'8('(,8.4'.1*9)81-0(*0$&2+-)5,0/,1*21#%* +853_996_488 141 * 0 0 * * 0 0 GCGTACCTGAACTTGGCCATTAAGAGCAGAGCCACCAGTGTCGCGGGGGC &-'*/*/8)$2(,.22&10&,))0/+,$38'(531,)2)'((%'6'(-1. +853_996_1656 113 chrM 16037 25 49M = 1018 -15019 AAATTGAAGCTGGACTTAAATTGAACGTTATTACTCCGCATCAGCAACC YVP/1W[[\]YY\]\\]]]]ZT[]][[]]]]\]]]\Y[[ZWY\Y\]]]] XT:A:U CM:i:1 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:32C16 +853_996_1656 177 chrM 1018 37 49M = 16037 15019 AGTATACCGGAAGGTGTACTTGGATAACCAAAGTGTAGCTTAAACAAAG ]]]\]\]UQ]]][]]][]]]]]XW]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_997_740 77 * 0 0 * * 0 0 GGGGGGAGATCGGTCGTCCTCGCGATTCGACGTAGGGAAGGAAACCGAAC 9&5;'.1')&(4&2&(,'))=&,,-.&+,&)(.,7/2)(4/-'95,4,<3 +853_997_740 141 * 0 0 * * 0 0 GTTATCGGGGGTTTTCGCAACATAGCTTTGGTAAGCATTTCTGCACCCCT (=('(,(,+<=3?<;::97<;::9<;8:4;<;9::=38:;?=;1<99087 +853_1026_2018 77 * 0 0 * * 0 0 CGGTCTCCGTACGACGATACGCTTTACGGTATAAGCCAACTGGAGTGGGT 6<7=7;6,7=(6928:#;#.8#$'7###4(%/#$.'')0'3$(&)&(2** +853_1026_2018 141 * 0 0 * * 0 0 GGAGCTATTGCTCAGAGGCCATGTGGTGTCCGTTGGCGTTTGTGCTGGTG 9<#64>;#659;#%61;'11&<+7#9=-3(3:/3342&)361&&(34#%, +853_1027_1303 69 chrM 3893 0 * = 3893 0 GAATTATTCTTTTTCGGCTTACTATACACTTTACTAAAATCCTTAAATTA *,10,,;0##3##&#%&#&(%##&##$&#%####%%&$#&#####$##$$ +853_1027_1303 137 chrM 3893 37 49M = 3893 0 GGGCCCATACCCCGAAAATGTTGGATTACACCCTTCCCGTACTAATAAA ]]]]]]]]]]]]]]]]]]]TS][QV]]][Z\]YXTWWYYQXXYML[TK' XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1055_941 77 * 0 0 * * 0 0 TCGTTATGGAATTATCGATTCCGCTAAGCACTCGGACCCCAAACGTACCT AA@<@@AA=?@AA?@A@@@@?@A8>>@A><>77=>>=>=>>?=A:<1>8@ +853_1055_941 141 * 0 0 * * 0 0 TCTTGAGGTTGCGTAATTCACGGTGAAATAAGGAATAGTATCGTATCGAA 5&1)>3175@6//;@:3/)=5&$#&&&&&&&%&$'&&%&)&&$&&&&/&) +853_1056_37 117 chrM 1193 0 * = 1193 0 AAAGCAAAGTGGGGGGTAGAGAAAGGGGGGTTGGGGCACTAGTCGATAGC (&47&&,&,&-*):164,5511;9;6/5;:0':15&,;;24'06/<6:): +853_1056_37 153 chrM 1193 25 49M = 1193 0 GGAGATAGAAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAA !!(BOW05\WSGGRNOPLLNRX]]XY]]]]OP]XVVW]]]]]]]XU\]] XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_1075_559 77 * 0 0 * * 0 0 TCCACATGACCTCTACAACAGCCTAAAAGTATCAAGCGGCCCAGGTCAAA 86*0.#&1*,4#2'&/'%1)152+02'9#))&)%&*&'%+*0#'#&-.$0 +853_1075_559 141 * 0 0 * * 0 0 TGAGCGCCACAGAGGGGAGTGAAACCTCGCTTCTGTATATTAGGGTAGGG #&5*&&(1&%&)2$,=(5+;9(0$2:&)%%$)1#:(#)2*,(',)#(,,# +853_1076_58 69 chrM 2475 0 * = 2475 0 ACAGGTCTAAGCCCGTAAAGTCGATCACGGACGGGTCGGCTTATATAGGC 78=89::;::8<:3<<;<9<8948;73:<<59::8:96:=(67881599, +853_1076_58 137 chrM 2475 37 49M = 2475 0 CAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCTTACGTGAT ]]\\\]]IIUW]JJ\\]YYYZ]\\]][USZZZQOWX]YTRQ\OIPQWNE XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1091_1124 77 * 0 0 * * 0 0 TTGCAGTCCTGTGCGGGGCGGCGGATTCGCTGCCTGTGCTGGGGGGTGGG 6;;;<===<@9?4:A<>9=>8;=<6=>/5578))2.&''(&%$$-+./$, +853_1091_1124 141 * 0 0 * * 0 0 GGAAAGTCAAAGGAGAGAATCGGCCCTGGAGGTGGCGTAAGGCGGTGTCC =?>@A??>@<<>9;9@>5;<A;??>A?:<>?;5:9;674;<518:5$=09 +853_1092_230 117 chrM 197 0 * = 197 0 GATACTTCGTGCCTGGATTGTGCCTTTCTTTTCTTGGATCTTTTCGTCTC 0)/8'/785%+59539,67%1974*)/;5+:2=7(9-=2,//;3&3,>)1 +853_1092_230 153 chrM 197 37 49M = 197 0 ACAAAGTAGCTCATAACACCTTGCTCAGCCACACCCCCACGGGACACAG JX]YUTTOU]OO[]]]URUY[XY]Y[]][]]]]][[Z]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:1G47 +853_1094_215 77 * 0 0 * * 0 0 GCGAACAGGGACGCAGCGGTGAACGATTTTCGCCTCCCTCACCGACCCCA 8;8.,:/*2./:*#3.2+2'(82&)$&266#4)(2/'*%1%$4'1*-:.3 +853_1094_215 141 * 0 0 * * 0 0 GCCTTTCTCCCTCTCCTCTGGTTTCGCCTTGGAACAAGCGAAGAACAGGC 4)&/-,1&$77/,.114('(1+)%'*0#,3$$#,#'&(#$$)#,$%3,#+ +853_1094_1720 69 chrM 7802 0 * = 7802 0 TCTAAGTAAGCCTAGCGTCCCTCTATGCTGTAGTGACCAGAGAGATTGTC 730,<8814/7479>7<7/1=;/:)=2;;,<<<;55=;7<==8/,:;&7' +853_1094_1720 137 chrM 7802 37 49M = 7802 0 ATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTCAAT X[]]]]VRSYXRY\]]]]\]XPRTTYXUSRUVYILXOSSMOQSLTSNXU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1138_1582 89 chrM 7649 37 49M = 7649 0 GATCAAACCACAGCTTTATACCAATTGTTCTTGAACTAGTTCCACTGAA \]UPSS\RLW\]RPYY][Y]\]]ZY\\[Y]]]]]\]]]SS]ZVW]]][\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:28C20 +853_1138_1582 181 chrM 7649 0 * = 7649 0 TCAGGAGCAATGGGTCATAGCGTTGGTGTTGTTGGAATCAGTGGGAACGC 86<8;?5:99>6<>/@=9=8==7=@=<7;<><:?=@?;>@<9<=?@@@=? +853_1139_914 77 * 0 0 * * 0 0 CTATGAATCAATTTGAATAGTCGTCTTAAAATATGGCACCAAAAGCGATC <(),)&6:$&>'8)('$&5)$*'#+'1#.6,)#$1&('',&6&+',&&+/ +853_1139_914 141 * 0 0 * * 0 0 GAACTAAAGCCAACGCGGCAAACCTTGTGCAGCCACCGCAAAACCACACC )4#%&+2%$,/$##*000$&.2(,'',,#'&#%%)%%#+,'-&$,$*&)* +853_1144_824 77 * 0 0 * * 0 0 GCTCGCTCTCAAAGGGGAGAGGGAAAGAGCTGCTGGGCTGGGGGACCGTT '(')%&,:4'.+4.:4(/028:9;:;01:;/6-(8344)/#++1),&9)& +853_1144_824 141 * 0 0 * * 0 0 ACCGCAACATGCTGAATATGACCTAGCAAACTACGAACAATCTGAACCAC '8'..1/#3)()&$%'/(&&#((('$1(.#+))',$)%(#(+),,,#$.) +853_1145_305 117 chrM 13509 0 * = 13509 0 GGCCAGATGTGGGCGAGCATTCCTGTCAGTACTCAAAGGTGTAAGACATC <=;>=883>6=>;=:8==;=?>;=<==<>><=>=:9;;<=?>><>:<=?= +853_1145_305 153 chrM 13509 25 49M = 13509 0 TAATTTCCACCCAAAAAGGCCAAATCAAATTATATTTCCTCTCATTCCT SY]#)]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:19A29 +853_1148_420 89 chrM 5650 37 49M = 5650 0 ATAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACTTCTTC UVVVFA<JWQXSU\RPSWOJP09YPT]]XSZ]]]JO\]]XX]]]UUZ\# XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1148_420 181 chrM 5650 0 * = 5650 0 TGACCCTCGGGCCAGGCGACCTATATGTCCGTGCATGTCACCTAGCGCAG =<:5;<1:,:=8;==?9;><>><3@><;@>@==A@>?:?@?=<A@=@>>? +853_1148_1437 77 * 0 0 * * 0 0 TTTTCCAGGTGGCGTGTCCTTAGCAGGCACTGTGATGCTCCTTGTTTAGA 3875((77'%//28,(884:9/(;$59(03%%(5$'%+)$)&-.7513(4 +853_1148_1437 141 * 0 0 * * 0 0 TAGCGGGGCGTAAGAAAGTAGAGTTGCTGGAAGATACGGGAAAAGAAGAG 59)&&;')&&4,1)&/;&(-)1&/(6/,0,1<<,:<5(748':;9==/7< +853_1149_239 77 * 0 0 * * 0 0 CTGACCGCTATAGCGTGCGGAACAGGGGGGCCCTCTTCAAGCGGGGAGGG 3<51,*1*)88&%:1%+)%8'$//0.15*4';195/&//'9;(&38)7&- +853_1149_239 141 * 0 0 * * 0 0 TCCACTCGGCATCTCTTGCGACCGCTTGAGGGGTCTAGAAAAGCCCTGGG $$+,#2#',+*%0'',#$*4(8#'0$5&#+0/4+*0+5%&(2)#&3/('+ +853_1149_1929 69 chrM 8987 0 * = 8987 0 CTAGTACCACCATTGTAGTAACGAGGGCCGTATTTAGGAGGGGCGCAAGG ><:<=98>;;>=<>><@@==>=A=<<;><;>:><>9<?<:><<<;>;<>< +853_1149_1929 137 chrM 8987 37 49M = 8987 0 TGCTGACCACCCACAGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]VY]]Z]]]ZOTJJYTNV]]TO XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1231_1371 77 * 0 0 * * 0 0 ATATCTCCTTCCATTTCTGCCTGCGCCTATGTCCTTTTAGGGGTGTTTGC ,/0,.#'#$954),&#-',;.*##*(*.'82#$#2*$*#(%%&###,'#+ +853_1231_1371 141 * 0 0 * * 0 0 CGCAACGTTCGTTACCCCTGTGTTTATACCTGATTTGAATTTAATCGAGG #:2+%%-,#,-/''''#&**+.#%&,*)#*#1$$&+%$%'%&3$'/$'(/ +853_1231_1635 89 chrM 3568 37 49M = 3568 0 AACATGTTCCTTCCTATGAATCCGAGCATCCTACCCACGATTCCGATAT YWRUYRTQEFQZ\WY][SUZZYX[]]TQ\WY]VV[]]ZW[]\OR]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1231_1635 181 chrM 3568 0 * = 3568 0 CGCATGTCAATCTGGTCCTTCATGCAAAATCTTGACTGAATTAATAAAAG 37):115'<654068;15:98:,67:74<9967;=<65@9:9;?;<;=>< +853_1232_516 117 chrM 1292 0 * = 1292 0 GTTGGGGGGTTGAGGAAGAGGGGGGTTGGGGGGTTGAGAAAAAGGGGGGG 4),%/-61&)0/'&&&4&&&,4/&-*5)&)/5.&&)+(&'*(,&'))685 +853_1232_516 153 chrM 1292 37 49M = 1292 0 CTTTTGCATAATGATTTAACTAGAATAAACTTAGCAAAGAGAACTTAAG !8[04XW]]ZZX]][XV]ZW]]]]]]\]]Z]]]]]]Y]]]\V[]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1232_940 77 * 0 0 * * 0 0 TAGGGCTAAGTGTCGTGGCTGGCCCCCAGCCAAAACTTTCGCTTCTACCC >175()<>>1&','95'/A&3,/?315@,&/',,,&&5,3/&1)&1'1<' +853_1232_940 141 * 0 0 * * 0 0 GTTTTCCTGTGCCCGAACTCTTGGGGATTATTCGCCCCGAACGGTTCGTA //&)3=65://7&/,1@15,)),33=1,<),,3(3?))//,),)6,39)' +853_1236_169 73 chrM 3979 25 49M = 3979 0 CTAGGAACTATAATCGTTATAATAAGCTCACACTGACTAATAATCTGAA ]]]JJRQNV]]WUOOYKR][$"!!SSXWIKTXXW[TNRGL]95KADHGM XT:A:U CM:i:0 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:49 +853_1236_169 133 chrM 3979 0 * = 3979 0 GCCTCCAGCTTATATACTCGAGGAGGGATATATTGAACATAGGCTGGTTG 8>9<:6<,.&99864<;>2);=52,:<59/<67<*;<:&+9:6&2<<<:) +853_1237_10 77 * 0 0 * * 0 0 AACAGATAATACGGCCTGCTTTGAGGGCTAACTAAAATGGGTCAGCAAAC (,,;/)&5/()&=)3(&;<:3)=3=)/=&=-.8,9;<=5;,&141<,;/< +853_1237_10 141 * 0 0 * * 0 0 TAGCATGCAGACGAGACGCTCCATTTACGGTCGAGAAGTTTAGGTAAGTT 6/<779>86=-4886:>:37==:1;729=2</===6:;,6/;66)((&14 +853_1242_1158 73 chrM 2264 37 49M = 2264 0 CAATTTCGGTTGGGGTGACCTCGGAGAACAAAACAACCTCCGAGTGATT ][X]]]]]]]]]]X]]]\]]]]]]]]]]]]]]]]]]]]]]\OTRACKW] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1242_1158 133 chrM 2264 0 * = 2264 0 GCCTTTCGAAGAGGGCCAGCGTCTACCAGACTAGCTTCCCTAGGAACAGC =@<=;@@<>==A>>@>=>@=A:>@>???=&;)19(,,&+%+&(&3'3&,& +853_1243_871 77 * 0 0 * * 0 0 CTGCGGGTAACGGGATGGAGAACGATATTTGATGAAGGTGGACCAACCCG 1),)*=3/4=,9<?,%46//./+1,&1/1,)<)8&,/7(>79,);668); +853_1243_871 141 * 0 0 * * 0 0 TCTGAGACGGCAAGAGGTGAATCACAGATGGGCGTAAACCATTAACTTGC 1&?()&,1>>,(=&:88>/>7=1:77=118:75/988:57283/&))'** +853_1265_969 77 * 0 0 * * 0 0 CGGCTGGGGGGGCGTGATGCAACGTTAAAGGGAGGCTCTTGTCAAGAGAA $<)'(')1.8:)()8(,&<//55,'&3,))'846164.001-/+381/72 +853_1265_969 141 * 0 0 * * 0 0 AGACTCGGACGGCCGAGGTTACCCCCTTGTTCCCCGGGCGAGTCTACCCC &82,4,54'),%&)'0('.9.$9',;1(#%88)*#8&(,%19,#,871*# +853_1266_828 113 chrM 105 25 49M = 1042 937 AATAAAATTACACATGCAAGTATCCGCACCCCAGTGAGAATGCCCTCTA /3[X]KFLS]]]]]]]]]]][Z]]]]]]]]]]]]]][]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:4G44 +853_1266_828 177 chrM 1042 37 49M = 105 -937 TAACCAAAGTGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGATT \Y]\]]]]]][]]WY]]]]]]]]]][[]]]]]]Y]]]]]W]][T]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1267_170 77 * 0 0 * * 0 0 TGAAATCGGGTTTATGCCTATACCGAGACCGGGGACCAACTAGGGACGGG 30:65905%/#52:2&3(7,532).4;,,+&3$+-(2)50*&0%'&1(1' +853_1267_170 141 * 0 0 * * 0 0 GGAGTGGAGGTGGTCGCCCACCAAAAGGGCCAATTCCGTCGCCATCGCCT &%%#+,4,##,,8.,%/#'*#72&-,.#*2123-&,4$2#,2(.(,,',# +853_1277_1774 73 chrM 1180 37 49M = 1180 0 CCATTAAAGTATAGGAGATAGAAATTTTAACTTGGCGCTATAGAGAAAG ]]]]]]]]]]]]]]]]]]]]]]TQXY]]XQZ]]][\\]ZVY]]YWX]]O XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1277_1774 133 chrM 1180 0 * = 1180 0 TCCCTTGACAACACGAATATAGCCAATTCTGCACTATCCTAAACATCACC AA?=??>;<>>@;>A@>:?<,3%&1,,(89'92+4&0)-5+&1,/15%/, +853_1278_1160 77 * 0 0 * * 0 0 AAGAGCAATGGGAATGATCATGCCGCTGCGTAATGGAATGGAGTGGAGGG A=<<@AA?>@@@?;?>:>A?>?AAA@7<<,,&//1(+)&9+&&&85(1&9 +853_1278_1160 141 * 0 0 * * 0 0 GTAAATCCGACCCCTAAAGAGCCAAGAACCCTAACCAAGGGTCAAAAGAA ;AA==A?:A>?A<?;AA=;79?8><7@<:::8<=97=@9<953=A<8,>6 +853_1280_287 73 chrM 8561 37 49M = 8561 0 AACTATCCTCGAATTCGCAGTAGCCATAATCCAAGCCTACGTATTCACT ]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]Y]]\] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:24T24 +853_1280_287 133 chrM 8561 0 * = 8561 0 GATCGTTCGCGAGCATCTGGCTTTCATGTATCTGAGGCAGCGCAGAGTGC >?A??>A>@A?>@><>?><@>@?<@=@8@;@:>;<>/=6<8193@86,/) +853_1280_1640 77 * 0 0 * * 0 0 TGGTAAGACTCCTCCTTTCGGCCCCCAACCCCCCCCCCAACCGAGCTGCC A;?<;<@<<>>A=44:??:<>:=74<:>48;=583==9/8=9:228122( +853_1280_1640 141 * 0 0 * * 0 0 GTTTCACCCCCGTCGATACATACTAAGACCTAACGTGCCCGAACAAAACG 8>*2#8+#%#3/##&=:#$.=2#+1<6&(%@1#($>)#'#8(&$+=&&$' +853_1280_1971 77 * 0 0 * * 0 0 TATTTGGTCAGGGGCGAGGGCGGCGGCTTCAATCTTGGGGCAGTGGGTTG )9177)6,3)):16&'/,1:6<()?))()(>5><(1=<?1.&)>/6&(1, +853_1280_1971 141 * 0 0 * * 0 0 ATTTCCAAAGGTTCCTTGAGGAGAAGTGTAAACATTCTCAAGTCCACCAA ))(,8.)1)+/&',)*76&85:4'5$$'#2/&(/#.%#&4.'***-+'37 +853_1281_1171 117 chrM 4957 0 * = 4957 0 TTCCTGATGAGGCAGCCTGGATGTATACTTGTGTGTACCACCTGATTGCT '+)&%(%:2&'*151;3:<49>:=<:9;>><<?<=:/=A=?:<A;?<:@< +853_1281_1171 153 chrM 4957 37 37M1D12M = 4957 0 ATACTATCAATTCTGGACTAGGAATTTAGGTTAACATCCAGACCAAGAG FSREOZRIHKRVVZ]WLR]]\YWZTW]]]YRZ]]]]\X]]VVY]]]]]] XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:1 XG:i:1 MD:Z:12T24^C12 +853_1289_1050 89 chrM 573 37 49M = 573 0 TAGCAACAGCCTAAAACTCAAAGGACTTGGCGGTGCTTTACATCCCTCT AFW2$ETYZPIR\]XKQ\XUTQ[[@F][]MJ[Z]XQNS]LBMT\XOUWU XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1289_1050 181 chrM 573 0 * = 573 0 TTTAACTGATTGCGGCGGACCGGTTATTGATATAAATGAACTCATGTAGC %*&&$(+36274':;<:5=6;3;:9:675:<74;:?6=:7878:;>>57= +853_1290_58 77 * 0 0 * * 0 0 ATAAGAAGGGGGTTCAACGGAACCGTGAACGCCAACCGGAAGTTAATCCC )<:<;9:>9:6==<90;<<9;;=98<;=<:1=<9.7<;6<1;>8;;<9<5 +853_1290_58 141 * 0 0 * * 0 0 AGACACAGAAGAAAGACATCATCGACAGGTCCATCGTCGTATGCCAGAGC :846:=:>;;>:9:=8=<=@:;;=;,:9?@;9;><3?=6<1=6=98:/:; +853_1297_514 73 chrM 1985 37 49M = 1985 0 GAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGGCCGCGGTATCCTA ]]Z\]]][]]]]UU]]]][[]XLU]]\QR]]NLYY[XU]]\X\][YXNK XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1297_514 133 chrM 1985 0 * = 1985 0 CTAAGTGTGTAACAACCACCCAACACGGCACGTCAAGATGCGCCGATACG 8@8;9>795A<8=9:A?7;@;??;5:><886<;:=6:9:8.=@=:4:9== +853_1297_1934 77 * 0 0 * * 0 0 TAATTTAGGTACGACTAACTCAATAAGCTAATTGAATGAACTAGGACTTA #&6##)0$)#4)#2##44&###7%/2##%1+#$,#*###$##5$#-###, +853_1297_1934 141 * 0 0 * * 0 0 TAGGGCTCACGGACTCCATCGCTACATCCCTCGGGGTGAAAGAAAACAAA 4*%#*,9)-*1751,197()*3-,#94&(-),$##.(#1/7%+#,0&,'0 +853_1311_394 73 chrM 7953 37 49M = 7953 0 TTGAGAATCAAAATGAACGAAAATCTATTCGCCTCTTTCGCTACCCCAA 0JAJJLX33PV]]]][]]]]]]]]]]]]]]]]]]]]]]]RS]]]]]]NQ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1311_394 133 chrM 7953 0 * = 7953 0 GGAATTGCCGTCGCGCGCTAGTTGGTTGGGCGTGCATGTTTTGGGTGGGT @=<><<?@?A<>?A>0(6)</.;<>:2<><07:<5(0;(4&&0;&.+1%/ +853_1312_213 77 * 0 0 * * 0 0 TCGCGAAGGGGACCCGTTATTTTAATAGTGCAGGGCATAACATTTAAATA 6?;==?@<<==A=;=<;8;99:8:<6>:6;<=:3(9/7986)5(./27&= +853_1312_213 141 * 0 0 * * 0 0 GATTCGGACAGAGGGCGAGGCTAGAAGGGCGGAGGGGAGCGGAGGCGAGG ?>:<?=?@=@=>;<<<?<=>?9?=:@<;<6<><61:4,1(2.)2&&,+2& +853_1321_1372 77 * 0 0 * * 0 0 CTTTAGCTCGCCTCAATGACCCGAATAGCACCCAGAGCAAGACTCCGCAT 5,7),=/'16=1,,':&,5);118181/18<'6;6/1@9,<9)>,,,&>( +853_1321_1372 141 * 0 0 * * 0 0 TGGACTTCAGTGGCAAGGGCGTCTAAAAATTAAAAGCTACCGTCAAACGC @A,>@(5);A&/6>>;??;7>9?19619>1=/<89<3;81>/=3>7/?/9 +853_1322_846 117 chrM 3881 0 * = 3881 0 TTTTTTTCAAGTTTTCTCGGTTCGTTCGTCTTATTGGCTTAAATCCTCAG 7'8&:41-,72'$(6;-&$,5-('(4-0#;618,47-5)44#;5::;;;2 +853_1322_846 153 chrM 3881 37 49M = 3881 0 AAATAAGCTATCGGGCCCATACCCCGAAAATGTTGGATTACACCCTTCC ]YSUOT]YV]]]]XVNP]]]][]]XTW]\\\]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 +853_1359_649 77 * 0 0 * * 0 0 GGAGAGGGGCTGCAAAATTTACCGAGCTGCTTCGAGGAGAGCCAAGGCGA <9;5<=;;::6;:;;1?88998<:>4:*91),4.5$7#,4'#$(,5.%)2 +853_1359_649 141 * 0 0 * * 0 0 GACACCCGCTCGAATCCATACACGACATAAGGGGCCTCCTGTGGAAAGCA 7>=41=&7/-)&+,8)/:):7,:<7)/0<:&&;(4(&(86'953.3>'./ +853_1359_2004 117 chrM 8663 0 * = 8663 0 CGCAGCTCGCCTCAGGAGCACTTTGGGACGCCGCTATTTGTGCTCCCTGG ,&94:;&75<=&898947:=>8<2?<><=>A?17;?<?.>>=A=@A<<=? +853_1359_2004 153 chrM 8663 37 49M = 8663 0 GCTTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGAGCCCTAT ZK!%VPT]]\]]]\\]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1360_1130 77 * 0 0 * * 0 0 TGCTTAGACTTTATTGCAGTCATAAATACCTATAATCCTTTGTGGTGACA >A@@<9?A:?>>?8@68?=>>9>/9<<44193577>;:;8?#,5.##4,) +853_1360_1130 141 * 0 0 * * 0 0 CAGCTCCATAGCCAATCTATTGCTCACGCAGGTCCGCGCCTACGACGTAT A@AA><:@8>@=AA@>8@A<?<@?@;=<A;A9=?A;<?>:>1>68<6?<; +853_1361_389 117 chrM 15925 0 * = 15925 0 ATCTTTGGCTTAATCCAGTTCTTAACGACGGGCATTCGTGATACAGCTGT <94:)746=)9:6>)98798><<A=78A<=A?<A==:;7@>4?8>?=9=7 +853_1361_389 153 chrM 15925 37 49M = 15925 0 ACTAATCAGCCCATGCTCACACATAACTGTGGTTTCATGCATTTGGTAT VV]VYYS\[]RP]]]ZY]]]]]]]]]]]]XUY]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:31A17 +853_1366_1495 77 * 0 0 * * 0 0 AACCATAAGGCGCTAACCACAATCGGTGACACCGGCTCCAAGCTTAGCCA ?;<9)6)&'&;+22'80:-%:&/3.<&)0(;):69;#)67;(8+&<-'%8 +853_1366_1495 141 * 0 0 * * 0 0 CTTGAAACGGTACCAAAACCAAAGCGCAACCCTGTCCCGTAAATTTATAT AA;>9>>:<<::?8;>7:>597<>/@6=:8>9=A/:;>:;/9==92/819 +853_1367_802 69 chrM 1422 0 * = 1422 0 GTTGTTATAGAACAGTCAACCAGCACTGTCTAAGTGGATTTCCGTGGCGG =<?;$%&<<&(5>='(3><+648A+*:<@#46><#70<>#*.<3237=;% +853_1367_802 137 chrM 1422 37 49M = 1422 0 ATTCATAGGTAGAGGTGAAAAGCCCAACGAGCCTGGTGATAGCTGGTTG ]]]]]]]]]]]]]]]]]]]]]][]]]]]]]]]]]]][]]]PEY]]]]ST XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:4G44 +853_1382_1227 73 chrM 682 25 49M = 682 0 GCCTATATACCGCCATCTTCAGCAAACCCTAAACAAGGTACCAAAGTAA ]]]][Z[\][ZZ]]\XY]][[YY]]][]]UVRQ[[\TSXUVILYPKHS] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:42G6 +853_1382_1227 133 chrM 682 0 * = 682 0 CTTGTCCTCTATCATACCAATCTAACTCGACCTTTAGTCTCCTCTCCTCT <;:99:98::8:#5:;:(7:6<#8<6:%0<89,5944,8:9:4/020*), +853_1383_1269 77 * 0 0 * * 0 0 GGGTGCTGCTGTCTCAACGGGCTGAGGGATAGCTGGTGGGAGCCCTTACC ,@)':/)>6:(*'*9&';-(:),4((/,#31;7&/532*8,5:5*75,+1 +853_1383_1269 141 * 0 0 * * 0 0 CTATTGACCAACACAGTTCAAGCCAATTGAAATTAGACTCCCCAGGCGTT /))3(<(152,3),<8:2)37;.6/&7$)1/,$0'%4$3&74).0&0%13 +853_1395_1324 77 * 0 0 * * 0 0 ACTTTCGCGGCCAAGGCCTCCTCCCTAGGGCCTTCCCGACCCGCTGCGGG )9-',&9*3)9',(1%6%7/4681)11&+:-1/4205()&3',,+$0#%% +853_1395_1324 141 * 0 0 * * 0 0 TAAGGAACCGCTCAACACTTATGGACTCGATCGGCCGCCGTGGTTGAGCC 4*,19./*)96*83;4,/1,)'27)2082,,'*6(&)&*%(*3422-+1+ +853_1396_1014 69 chrM 13417 0 * = 13417 0 GGTCCCCTAGAGTGGGGCCTCGAACCTACAGATATTGAGTCGGGAGCCCG @<@:===?<;==98<:9>9:=:;@;:;=68::<:::;>:::><<863>9; +853_1396_1014 137 chrM 13417 37 49M = 13417 0 CCAAAAATCAGCATCACTTCTACTAGACTCAATCTGACTAGAGAACATC ]]X]]]\Y]]]]Y]]][]]]][]]]]\]]]WR\]]YX]]]]]]]]QO]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:42A6 +853_1412_1664 89 chrM 2467 37 49M = 2467 0 TAATGGTGCAACCGCTATTAAGGGTTCGTTTGTTCAACGATTAAAGTCT WKT\NDIZ]NMRMTZ]]JH,/NDHHV]TTE>RZ]]XMVVSJJZMRYY]! XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:49 +853_1412_1664 181 chrM 2467 0 * = 2467 0 TATACGACGAATCATTAGACCTCGGGTTGTGTTCAATTCCTGTCCAGATC (&&&1.)0&1,&$31'.$1-&)#13,*%)+,'$/4,$$*/,5,765)545 +853_1413_877 77 * 0 0 * * 0 0 GACGGTCGTCCCTATTGTATTCGTCTCTCCGTGTCGTGACGTTGCCCGGT &)#*648#,9(.#3&&(#9.2,#/%3)#&555#).%3#19-4#4'3,#2+ +853_1413_877 141 * 0 0 * * 0 0 AGGTCAGTTTCCAAGGTGGGGGTTGGCATTACGTACCATTCGATTAGATT ?A?<<;A><?;A=<;;>856/>#%###&###%####&&###$$$&#%#$$ +853_1437_116 77 * 0 0 * * 0 0 AGCTGCGGCAGCCGAACACGGCACAAGGTTGGATAATCACCGGAAGTGGA $;,)42'#2(#&,,#%#2,2%,',42#$))#*428#%$2.%$%4%*#)%& +853_1437_116 141 * 0 0 * * 0 0 CCCAAACCAGGCTCGTCCCCTTTAAGATAGTCTCGCCCCCCCTCAACTTG 6>>9;<@7=::=:>=544=54#'8&5-2)#(*)4,&%+#',2-&+&0-*2 +853_1437_1533 117 chrM 9411 0 * = 9411 0 CGCAATTAAACTTAATGCGACATAAATAGCGGCATCGGACCTCCATACTG #%*(4-#(4%$#$&4+*2586;9A<89:><5=?>;=?>=:<=8>>:?<@> +853_1437_1533 153 chrM 9411 25 49M = 9411 0 TCTATTGATGAGGATCCTATTCTTTTAGTATTGACCAGTACAATTGACT ]]]]]VV]UY]][]]VX]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:1T47 +853_1486_1272 89 chrM 9431 23 49M = 9431 0 TCTTTTAGTATTGACCAGTACAATTGACTTCCAATCAATCAGCTTCGGT NHVQR]SN\][RQO@MTMYUVVT]SU]]OJYYXVSSKOSSTRS]]XUOU XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,-9432,1S48M,3; +853_1486_1272 181 chrM 9431 0 * = 9431 0 ACTATGAAAAGCCTCCCGACGCAAGAAAGCATTCACGATATGGACATAGC 22%-,))%99<168=961#151,#/9(3%89/76:7)55965689<<7(7 +853_1487_496 77 * 0 0 * * 0 0 TTTATTACGGGCGACGAAACGAATGGTATTTCCCTTGCGTTTTTCGCTTG <,'+856638:)0*.,+&.;7&1+;5-&1779<0:+3)/&+;1&,7()(( +853_1487_496 141 * 0 0 * * 0 0 GTCGCACCCCTCCTAAACCCCAGATCAAAAACTGCACCCGCGACCCACTC 6969=651<=::86774;7:<9=/69>0366/8,,8=:</6&31(3,/&) +853_1488_605 77 * 0 0 * * 0 0 CCCGTAAGGAACGGGGATTAGAAGGATGGCAGGGGAGTGGAAACGAAGGG (%/)'(32+'))1*6776&2%)8&,7)71'2&$5+%))724&0)$('&(' +853_1488_605 141 * 0 0 * * 0 0 TCGCCGCCAAACGATGCACTAATTTGCTTACCGGCCAGGCACGGATCGAA 0)&)&1)/1(6)&(+),1=/*&&(&41,',)&1/(/,9/)1//<)&:15, +853_1489_374 69 chrM 14307 0 * = 14307 0 CTCTTCAAACTGACAGCGCAATGGATGAGGCCACAAAAAGAAACTTTAAA >8786=:8:3:2;;;6(=99.3=5*/,%'(+#7121074(25$0,+%,27 +853_1489_374 137 chrM 14307 37 49M = 14307 0 CCTAATCCTCCAAATCCTAACAGGCCTATTCCTAGCCATACACTACACA ]][NR]Z]]]]]]]]YXWQY]]WZ[\]]]PT]]]PU]]]X[]XR]]]]\ XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16T32 +853_1493_452 77 * 0 0 * * 0 0 CGCTCTCCCGATTCAGCAAAACAAACAAGGCTCCACCGTCCCGGGGCCGA '$),&/'53(%$((6'*'(&+%694&(2.1'&1(3&2'9/%)(&)()'(/ +853_1493_452 141 * 0 0 * * 0 0 GAAAGGACCAAACCAGGAGCATCCACCCATGGCCGCTAAACTAGGAGGAG $*)&'#,,,##(*#'%#%##(#))###%$$$##%###$#)###'#%%(%# +853_1493_1908 117 chrM 14920 0 * = 14920 0 TTGTGGTATAAAGGACACGCCTTGGTGGCCAAGTTGTCAACGTAATCATG ;<<9:=7<;;9<?=<;9<<=<88?>==;?<==;;=><;===:::>?;<@; +853_1493_1908 153 chrM 14920 37 49M = 14920 0 TTCTCCCCTGACCTCCTAGGAGACCCAGACAACTACACCCCAGCTAACC YY[]]ZX]]YYY[]]]]]]][\]]]]]]]]]]]]]]]]]]]]]]]]]]] XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:8C40 +853_1498_1797 77 * 0 0 * * 0 0 CCTCAGCGCCACCCAGCTTGGAAAACTAAACAAACAAATAAACTTTCACT &&&&&#&#######&$##&########$&$###&$$$###$$#$#$#### +853_1498_1797 141 * 0 0 * * 0 0 TGAAGGTCGCATGGCGCGGATTGCACAGCAGATCAACTGTTTCAAAAACA 3=#&&04&',.8#*&-:&.*./$'#);%.$21'0&&/&###4$&%%0$#$ +853_1499_1261 117 chrM 2408 0 * = 2408 0 TTTCATTTAACACCGGGAATGGTTCACAATCAATGCCCGAGCAGCACAGT /2&7=)6&?<)/56<9:<9:7&;7<:<9<89;>9A><>>?5<<;=<=:;: +853_1499_1261 153 chrM 2408 37 49M = 2408 0 ATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCGATGTTGGAT ]/4ZY]\\QT]KO]]YMXZ[WOMN]]TW]]]\VSYQSSQXVWQT[RY]] XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1509_820 77 * 0 0 * * 0 0 GCAACCTGACCGTTTACACAACGTGTGGAAAAGAGGTGGGAGAGGGTTGG 18;:.49;5+6/<=879672373=.:;;47$'%06262%562%':5$5&: +853_1509_820 141 * 0 0 * * 0 0 ACAAGAGACTACGAGGACACACTCCGGCCCTAAATCGCGAAAAACGGCCC ',.1438/1)&1*3.18,72875),/*&://.4&),+/#+3%5*)56((& +853_1510_448 117 chrM 982 0 * = 982 0 CCGCACCGGGCAGCAGCCAGGAGGATTATGGGGTACCTGATGTTGTTTGT ##$########''%$+'4)%0%34)82'2,(/27/,*:4'2177460826 +853_1510_448 153 chrM 982 37 49M = 982 0 CCAAACATATGAAAGGAGACAAGTCGTAACAAGGTAAGTATACCGGAAG QSZ\WTIO[MGR[]]UO]]Y[WWYTSPY]Y[X]]XZV[]TRU[Z\[Z]$ XT:A:U CM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:49 +853_1511_561 73 chrM 1971 37 1M1D48M = 1971 0 CTTCCCAGTATTAGAGGCACTGCCTGCCCAGTGACATCTGTTTAAACGG !!\]]]]]\]ZW[]]QQ]]]Z]]UT[]]]]]]]]]V[]]]SAMXYTTXK XT:A:U CM:i:2 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:1^A2T45 +853_1511_561 133 chrM 1971 0 * = 1971 0 GCAAACCGTTCTGATGTAAACAACGTCAATTTGGGCCTTTACAAAGCGTT ?A===@A?><A8A>:>9;;=@828;'#+99:#'9;;4#>6-1/89,-&45 +853_1511_1886 77 * 0 0 * * 0 0 GGATAGTAGGAACGAGATGCGGGGAACCCGTTTGGTGCTCGGCGGGTGTG :A(>/2;&>='7&>::(1678>>:1&(<::11,.<8,(),8>%8</):(< +853_1511_1886 141 * 0 0 * * 0 0 GACGTCGTCGTCGTCGTCGTTAACCCTAAGGTTCGCGGGACCCCTCAACA 99;<=:>?<;=8;>=;8=<==9:8::==:9,8?:;)0<6.13;+:*5/:) +853_1530_202 77 * 0 0 * * 0 0 GGTTCATGGCGGGACATGAGGTGCCATACCGCAACCCTCTAGGCTGATCG /9::8:7;58;0<%;;9=(3;8<1;73;16;1=57686/585:30;/<61 +853_1530_202 141 * 0 0 * * 0 0 GGGGACTGAAGAGCGGCCATTAAGGGAGAATTGAGGAGAAGAGATGAGAA ;<;99=:99>6>8:8<?:898A=2<7@88>)6#/+,&)(#,'-%#+-*%( +853_1530_1652 117 chrM 5148 0 * = 5148 0 AGATTCCGGCATTTCAGCTAGTGCCTGCCCAGCCGTATATATTCGGCAAA +$5/5&$4982/;*;5#:3;(%;:;0'<7952:561);57)#<0-%6;58 +853_1530_1652 153 chrM 5148 23 49M = 5148 0 AATTTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTT DM[\UX]]\V[]]]]]]]]]]Z]]]]]]]]]]]]\]][]]]]]]]]]]\ XT:A:U CM:i:0 SM:i:23 AM:i:0 X0:i:1 X1:i:1 XM:i:0 XO:i:0 XG:i:0 MD:Z:49 XA:Z:chrM,-5149,1S48M,3; +853_1569_1617 73 chrM 15857 37 10M1D39M = 15857 0 TTCAGGGCCATCCCACCCAACCTCGCCCATTCTTTCCCCTTAAATAAGA ]]]]]]]]]]]]]]]]]]]]]]]]WX]]]\Z[]]QO]]\OQUSWMNK5I XT:A:U CM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:10^T39 +853_1569_1617 133 chrM 15857 0 * = 15857 0 TAATTGTATATAAATGCTGCATGCCGGGAAATTGTGCAGCTACGTGGAAG <A@=>?><<>=@@?=@?;=<=<9A<==;AA>;57:<?<;75>67695@:6 +853_1570_1472 77 * 0 0 * * 0 0 CACCGGGACTAAATTAGCTTCTCGTTCCAGGCGCATCGGACTCACGTTAT @A=?<A?@?A=9=AA=@=;>?>?<@=><=:<@9=,A?;<<7<=61;>9/? +853_1570_1472 141 * 0 0 * * 0 0 CGACGCACGTCCGCAGGTACCAGGAACGTCATCCGTAACCGCGGGCACGC <=<>==;=:@>@<@==AA?A@>A?@<@?=A9>@?;>=9?<9>A>><3;=7 +853_1585_323 73 chrM 8665 25 49M = 8665 0 TTACCACATAGTAAACCCCAGCCCATGACCACTTACAGGGGCCCTATCA #"]\X]]]]]]]\]]Y[]]]QO]]\PPYZ]\Y\WXULU]PDPYVVSIQ\ XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:39A9 +853_1585_323 133 chrM 8665 0 * = 8665 0 CAAGGGACTATAACTGAGGGGTGTGGAGCGGTTGGTTGGCCAGCGCATTA <;:>?<0<;;=;9781&(,95'+$-+2#,#'',1',$,$1/5+#2)6%&( +853_1585_2023 77 * 0 0 * * 0 0 AATAAATATTACCATTTAAGAAGGAATACGAAAAGACGCCGGCGTCCACT :A=>5#:==<+=<==)=?<=&<=<>%<<?;)<=<=#>9<:$<;;:&?3<5 +853_1585_2023 141 * 0 0 * * 0 0 AGGGGGATGCAGGCAAGACAAACGGCACGGGCGTGGGGAGAGGTCCCAAG ?>@A>=44@@8<5A<7>:=?577<?867=>4588>:;88<59;<=:;)9= +853_1603_500 89 chrM 13884 25 49M = 13884 0 CTCAGTAGCTATAGCCGTTGTATAACCAAAAACAACCAACATTCCTCCC ,T]YOQSTUSUY[\XU[]]ZZTY][]]]]]][\]\]]]]ZVX]WZ]]]] XT:A:U CM:i:1 SM:i:25 AM:i:0 X0:i:1 X1:i:0 XM:i:3 XO:i:0 XG:i:0 MD:Z:9C39 +853_1603_500 181 chrM 13884 0 * = 13884 0 AACAGGCCGACTTTGGTCCAGGGGAAACGTTTGGTGACTCAGAATAGGTC %/06321266(/.:504#:7(&,9:39544<<8<95<2>:8<8:=87:<: +853_1603_1995 77 * 0 0 * * 0 0 CCAGGGAGATCCTAACGTGGAGCCGCGAATACTCCCAACCACCTATACAG :;;;>=<9A==;9:=;6::?:9@<@:8<<;:6><@<<9;@595:684279 +853_1603_1995 141 * 0 0 * * 0 0 CTGGTACCGGTATGAGCCTAGGATAGAGCGGCAACTCTTATACTGCCGGT 9=:8;>>=<==<<>=AA@><A><<=?>?=<<??<<;?;;?<86=<9?=3;
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bwa_wrapper_out8.sam Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,60 @@ +seq1 113 phiX174 340 37 18M = 322 -18 GGATTACTATCTGAGTCC II9(.+5$IIIIIII#II XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq1 177 phiX174 322 25 18M = 340 18 GATATTTTAAAGGAGCGT B&&I13A$G$*%$IIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:2C8A6 +seq10 129 phiX174 4168 37 18M = 4149 -19 AGGGCGTTGAGTTCGATA IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq10 65 phiX174 4149 25 18M = 4168 19 ATTCTTTCTTTTCGTATC IIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:5G11G0 +seq11 129 phiX174 4091 37 18M = 4072 -19 ATCCCCAATGCTTGGCTT IIIII$%*$G$A31I&&B XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq11 65 phiX174 4072 37 18M = 4091 19 GCATTTCTACTCCTTCTC II#IIIIIII$5+.(9II XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:12T5 +seq12 129 phiX174 5365 25 18M = 5349 -16 GGATTGGCGTTTCCAACC IIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T9A7 +seq12 65 phiX174 5349 37 18M = 5365 16 CGCGCTTCGATAAAAATG IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq13 129 phiX174 4093 25 18M = 4074 -19 CCCCAATCCTTGCCTTCC IIIAAIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:7G4G5 +seq13 65 phiX174 4074 37 18M = 4093 19 ATTTCTACTCTTTCTCAT IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17A0 +seq14 129 phiX174 4016 37 3M1D15M = 3998 -18 TGATATTTTGACTTTGAG IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:3^T15 +seq14 65 phiX174 3998 37 18M = 4016 18 CCCTTTTGAATGTCACGC IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:5C12 +seq15 129 phiX174 5216 37 5M2I11M = 5198 -18 TTACGAAACGCGACGCCG IIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:2 MD:Z:16 +seq15 65 phiX174 5198 37 18M = 5216 18 CCAACTTACCAAGGTGGG IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13C4 +seq16 129 phiX174 2897 37 18M = 2880 -17 TTATTTTTCTCCAGCCAC IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6G11 +seq16 65 phiX174 2880 37 10M1I7M = 2897 17 TCAGGGTATTAAAAGAGA IIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:1 XG:i:1 MD:Z:5T11 +seq17 129 phiX174 3053 25 18M = 3034 -19 AAACAATACTTTAGGCAT IIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0T9G7 +seq17 65 phiX174 3034 37 18M = 3053 19 GTGATGTGCTTGCTACCG IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq18 133 phiX174 4088 0 * = 4088 0 CCGTTCCATAAGCAGATG IIIIIIIIIIIIIIIIII +seq18 73 phiX174 4088 37 18M = 4088 0 TCAATCCCCCATGCTTGG IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9A8 +seq19 129 phiX174 3324 37 18M = 3304 -20 GAGCGTCCTGGTGCTGAT IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6G11 +seq19 65 phiX174 3304 37 18M = 3324 20 TTCCTGCGCTTAATGCTT IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6A11 +seq2 129 phiX174 159 37 18M = 141 -18 CAGCTCGAGAAGCTCTTA IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq2 65 phiX174 141 37 18M = 159 18 ATTCGACCTATCCTTGCG IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq20 129 phiX174 1100 37 18M = 1082 -18 ACTCCGGTTATCGCTGGC IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq20 65 phiX174 1082 37 18M = 1100 18 CTTATTACCATTTCAACT IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq21 129 phiX174 1363 37 18M = 1344 -19 TAAGCATTTGGTTCAGGG IIIII$%*$G$A31I&&B XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10T7 +seq21 65 phiX174 1344 37 18M = 1363 19 CTGATACCAATAAAACCC II#IIIIIII$5+.(9II XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:15T2 +seq22 137 phiX174 5215 37 18M = 5215 0 GTTACGACGCGACGCCGT IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq22 69 phiX174 5215 0 * = 5215 0 AATCAAACTTACCAAGGG IIIIIIIIIIIIIIIIII +seq23 129 phiX174 4308 25 18M = 4289 -19 TTTAATAACCCTATAGAC IIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:0A8A8 +seq23 65 phiX174 4289 37 18M = 4308 19 TGTGCTTCCCCAACTTGA IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6C11 +seq24 129 phiX174 4101 37 18M = 4084 -17 CTTGGCTTCCCTAAGCAG IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10A7 +seq24 65 phiX174 4084 37 18M = 4101 17 TTTCTCAATCCCCAATGC IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq25 129 phiX174 537 37 18M = 520 -17 CGTGCTCGTTGCTGCGTT IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9C8 +seq25 65 phiX174 520 37 18M = 537 17 TTGCTACTGACCGCTCTT IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:17C0 +seq26 129 phiX174 1994 37 18M = 1976 -18 AAGGATGTTTTCCGTTCT IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq26 65 phiX174 1976 37 18M = 1994 18 CCGCGTGAAATTTCTATG IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq27 129 phiX174 2614 37 3M1D15M = 2598 -16 TGTTTGGTGCTGATATTG IIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:1C1^G15 +seq27 65 phiX174 2598 37 18M = 2614 16 CGCTAATCAAGTTGTTTC IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:9G8 +seq28 129 phiX174 2906 37 18M = 2890 -16 TCCAGCCACTAAAGTGAG IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10T7 +seq28 65 phiX174 2890 25 18M = 2906 16 AAAGAGATTATTTGTCGG IIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:16T0C0 +seq29 133 phiX174 5339 0 * = 5339 0 GATAATGATTGGGGTATC IIIIIIIIIIIIIIIIII +seq29 73 phiX174 5339 37 18M = 5339 0 CAAATTAATGCGCGCTTC IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6T11 +seq3 129 phiX174 523 37 18M = 505 -18 CTACTGACCGCTCTCGTG IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq3 65 phiX174 505 37 18M = 523 18 GTAACAAAGTTTGGATTG IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq30 129 phiX174 4108 37 18M = 4091 -17 ACCATAAGCAGATGGATA IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:0T17 +seq30 65 phiX174 4091 37 18M = 4108 17 ATCCCCTATGCTTGGCTT IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:6A11 +seq4 137 phiX174 945 37 18M = 945 0 TAGGTGGTCAACCATTTT IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:12A5 +seq4 69 phiX174 945 0 * = 945 0 AGCCGCTCGTCTTTTATG IIIIIIIIIIIIIIIIII +seq5 129 phiX174 5003 37 18M = 4985 -18 TTTCTATGTGGCTTAATA IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13A4 +seq5 65 phiX174 4985 37 18M = 5003 18 CAGTTATATGGCTTTTGG IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:13G4 +seq6 129 phiX174 944 37 18M = 925 -19 GTAGGTGGTCAACAATTT IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq6 65 phiX174 925 37 11M1D7M = 944 19 AGGCGCTCGTCTTGGTAT IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:1 XG:i:1 MD:Z:11^T7 +seq7 129 phiX174 960 37 18M = 943 -17 TTTAATTGCAGGGGCTTC IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:25 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq7 65 phiX174 943 25 18M = 960 17 TGTAGGTGGTCAACCAAT IIIIIIIIIIIIIIIIII XT:A:U NM:i:2 SM:i:25 AM:i:25 X0:i:1 X1:i:0 XM:i:2 XO:i:0 XG:i:0 MD:Z:14A1T1 +seq8 137 phiX174 1715 37 18M = 1715 0 ATGCGCTCTATTCTCTGG IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:0 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:10A7 +seq8 69 phiX174 1715 0 * = 1715 0 ACACCCGTCCTTTACGTC IIIIIIIIIIIIIIIIII +seq9 129 phiX174 2613 37 18M = 2596 -17 TTCTGTTGGTGCTGATAT IIIIIIIIIIIIIIIIII XT:A:U NM:i:0 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:0 XO:i:0 XG:i:0 MD:Z:18 +seq9 65 phiX174 2596 37 18M = 2613 17 GCCGCTATTCAGGTTGTT IIIIIIIIIIIIIIIIII XT:A:U NM:i:1 SM:i:37 AM:i:37 X0:i:1 X1:i:0 XM:i:1 XO:i:0 XG:i:0 MD:Z:7A10
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/chr_m.fasta Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,335 @@ +>chrM +GTTAATGTAGCTTAATAATATAAAGCAAGGCACTGAAAATGCCTAGATGA +GTATTCTTACTCCATAAACACATAGGCTTGGTCCTAGCCTTTTTATTAGT +TATTAATAGAATTACACATGCAAGTATCCGCACCCCAGTGAGAATGCCCT +CTAAATCACGTCTCTACGATTAAAAGGAGCAGGTATCAAGCACACTAGAA +AGTAGCTCATAACACCTTGCTCAGCCACACCCCCACGGGACACAGCAGTG +ATAAAAATTAAGCTATGAACGAAAGTTCGACTAAGTCATATTAAATAAGG +GTTGGTAAATTTCGTGCCAGCCACCGCGGTCATACGATTAACCCAAATTA +ATAAATCTCCGGCGTAAAGCGTGTCAAAGACTAATACCAAAATAAAGTTA +AAACCCAGTTAAGCCGTAAAAAGCTACAACCAAAGTAAAATAGACTACGA +AAGTGACTTTAATACCTCTGACTACACGATAGCTAAGACCCAAACTGGGA +TTAGATACCCCACTATGCTTAGCCCTAAACTAAAATAGCTTACCACAACA +AAGCTATTCGCCAGAGTACTACTAGCAACAGCCTAAAACTCAAAGGACTT +GGCGGTGCTTTACATCCCTCTAGAGGAGCCTGTTCCATAATCGATAAACC +CCGATAAACCCCACCATCCCTTGCTAATTCAGCCTATATACCGCCATCTT +CAGCAAACCCTAAACAAGGTACCGAAGTAAGCACAAATATCCAACATAAA +AACGTTAGGTCAAGGTGTAGCCCATGGGATGGAGAGAAATGGGCTACATT +TTCTACCCTAAGAACAAGAACTTTAACCCGGACGAAAGTCTCCATGAAAC +TGGAGACTAAAGGAGGATTTAGCAGTAAATTAAGAATAGAGAGCTTAATT +GAATCAGGCCATGAAGCGCGCACACACCGCCCGTCACCCTCCTTAAATAT +CACAAATCATAACATAACATAAAACCGTGACCCAAACATATGAAAGGAGA +CAAGTCGTAACAAGGTAAGTATACCGGAAGGTGTACTTGGATAACCAAAG +TGTAGCTTAAACAAAGCATCCAGCTTACACCTAGAAGATTTCACTCAAAA +TGAACACTTTGAACTAAAGCTAGCCCAAACAATACCTAATTCAATTACCC +TTAGTCACTTAACTAAAACATTCACCAAACCATTAAAGTATAGGAGATAG +AAATTTTAACTTGGCGCTATAGAGAAAGTACCGTAAGGGAACGATGAAAG +ATGCATTAAAAGTACTAAACAGCAAAGCTTACCCCTTTTACCTTTTGCAT +AATGATTTAACTAGAATAAACTTAGCAAAGAGAACTTAAGCTAAGCACCC +CGAAACCAGACGAGCTACCTATGAACAGTTACAAATGAACCAACTCATCT +ATGTCGCAAAATAGTGAGAAGATTCGTAGGTAGAGGTGAAAAGCCCAACG +AGCCTGGTGATAGCTGGTTGTCCAGAAACAGAATTTCAGTTCAAATTTAA +ATTTACCTAAAAACTACTCAATTCTAATGTAAATTTAAATTATAGTCTAA +AAAGGTACAGCTTTTTAGATACAGGTTACAACCTTCATTAGAGAGTAAGA +ACAAGATAAACCCATAGTTGGCTTAAAAGCAGCCATCAATTAAGAAAGCG +TTCAAGCTCAACGACACATCTATCTTAATCCCAACAATCAACCCAAACTA +ACTCCTAATCTCATACTGGACTATTCTATCAACACATAGAAGCAATAATG +TTAATATGAGTAACAAGAATTATTTCTCCTTGCATAAGCTTATATCAGAA +CGAATACTCACTGATAGTTAACAACAAGATAGGGATAATCCAAAAACTAA +TCATCTATTTAAACCATTGTTAACCCAACACAGGCATGCATCTATAAGGA +AAGATTAAAAGAAGTAAAAGGAACTCGGCAAACACAAACCCCGCCTGTTT +ACCAAAAACATCACCTCTAGCATTTCCAGTATTAGAGGCACTGCCTGCCC +AGTGACATCTGTTtaaacggccgcggtatcctaaccgtgcaaaggtagca +taatcacttgttccctaaatagggacttgtatgaatggccacacgagggt +tttactgtctcttacttccaatcagtgaaattgaccttcccgtgaagagg +cgggaatgactaaataagacgagaagaccctatggagcttTAATTAACTG +ATTCACAAAAAACAACACACAAACCTTAACCTTCAGGGACAACAAAACTT +TTGATTGAATCAGCAATTTCGGTTGGGGTGACCTCGGAGAACAAAACAAC +CTCCGAGTGATTTAAATCCAGACTAACCAGTCAAAATATATAATCACTTA +TTGATCCAAACCATTGATCAACGGAACAAGTTACCCTAGGGATAACAGCG +CAATCCTATTCCAGAGTCCATATCGACAATTAGGGTTTACGACCTCGATG +TTGGATCAAGACATCCTAATGGTGCAACCGCTATTAAGGGTTCGTTTGTT +CAACGATTAAAGTCTTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGT +CGGTTTCTATCTATTCTATACTTTTCCCAGTACGAAAGGACAAGAAAAGT +AGGGCCCACTTTACAAGAAGCGCCCTCAAACTAATAGATGACATAATCTA +AATCTAACTAATTTATAACTTCTACCGCCCTAGAACAGGGCTCgttaggg +tggcagagcccggaaattgcataaaacttaaacctttacactcagaggtt +caactcctctccctaacaacaTGTTCATAATTAACGTCCTCCTCCTAATT +GTCCCAATCTTGCTCGCCGTAGCATTCCTCACACTAGTTGAACGAAAAGT +CTTAGGCTATATGCAACTTCGCAAAGGACCCAACATCGTAGGCCCCTATG +GCCTACTACAACCTATTGCCGATGCCCTCAAACTATTTATCAAAGAGCCA +CTACAACCACTAACATCATCGACATCCATATTCATCATCGCACCAATCCT +AGCCCTAACCCTGGCCTTAACCATATGAATCCCTCTGCCCATACCATACC +CACTAATCAACATAAACCTAGGAATTCTATTCATACTAGCCATGTCCAGC +CTAGCTGTCTACTCAATCCTTTGATCAGGATGGGCCTCAAACTCAAAATA +CGCCCTAATTGGAGCTCTACGAGCAGTAGCACAAACCATCTCATACGAAG +TAACTCTAGCAATCATCCTACTCTCAGTCCTCCTAATAAGCGGATCATTC +ACATTATCAACACTTATTATTACCCAAGAATACCTCTGATTAATCTTCCC +ATCATGACCCTTAGCCATAATGTGATTCATCTCAACATTAGCCGAAACCA +ACCGAGCTCCATTTGACCTAACAGAAGGAGAATCAGAACTCGTCTCTGGA +TTCAACGTTGAATACGCAGCCGGCCCATTTGCTCTATTCTTCCTAGCAGA +ATACGCAAACATCATCATGATAAACATCTTCACAACAACCCTATTTCTAG +GAGCATTTCACAACCCCTACCTGCCAGAACTCTACTCAATTAATTTCACC +ATTAAAGCTCTCCTTCTAACATGTTCCTTCCTATGAATCCGAGCATCCTA +CCCACGATTCCGATATGACCAACTTATACACCTCCTATGAAAGAACTTCC +TACCACTCACACTAGCCCTCTGCATATGACACGTCTCACTTCCAATCATA +CTATCCAGCATCCCACCACAAACATAGGAAATATGTCTGACAAAAGAGTT +ACTTTGATAGAGTAAAACATAGAGGCTCAAACCCTCTTATTTctagaact +acaggaattgaacctgctcctgagaattcaaaatcctccgtgctaccgaa +ttacaccatgtcctaCAAGTAAGGTCAGCTAAATAAGCTATCGGGCCCAT +ACCCCGAAAATGTTGGATTACACCCTTCCCGTACTAATAAATCCCCTTAT +CTTCACAACTATTCTAATAACAGTTCTTCTAGGAACTATAATCGTTATAA +TAAGCTCACACTGACTAATAATCTGAATCGGATTTGAAATAAATCTACTA +GCCATTATCCCTATCCTAATAAAAAAGTACAATCCCCGAACCATAGAAGC +CTCCACCAAATATTTTCTAACCCAAGCCACCGCATCAATACTCCTCATAA +TAGCGATCATCATTAACCTCATACACTCAGGCCAATGAACAATCACAAAA +GTCTTCAACCCCACAGCGTCCATCATTATAACTTCAGCTCTCGCCATAAA +ACTTGGACTCACACCATTCCACTTCTGAGTACCCGAAGTCACACAGGGCA +TCTCATTAACATCAGGTCTCATCCTACTTACATGACAAAAACTAGCCCCA +ATATCAATCCTATATCAAATCTCACCCTCAATTAACCTAAATATCTTATT +AACTATAGCCGTACTGTCAATCCTAGTAGGAGGCTGAGGCGGTCTCAACC +AAACCCAACTACGAAAAATCATAGCATACTCGTCAATCGCGCATATAGGA +TGAATAACAGCTGTCCTAGTATATAACCCAACACTAACAATACTAAACAT +ATTAATTTACATTATAATAACACTCACAATATTCATACTATTTATCCACA +GCTCCTCTACTACAACACTATCACTCTCCCACACATGAAACAAAATACCT +CTAACCACTACACTAATCTTAATTACCTTACTATCCATAGGAGGCCTCCC +CCCACTATCAGGATTCATACCCAAATGAATAATCATTCAAGAGCTCACCA +AAAATAGCAGCATCATCCTCCCCACACTAATAGCCATTATAGCACTACTC +AACCTCTACTTCTACATACGACTAACCTATTCCACCTCACTGACCATATT +CCCATCCACAAACAACATAAAAATAAAATGACAATTCGAAACCAAACGAA +TTACTCTCTTACCCCCGTTAATTGTTATATCCTCCCTACTCCTCCCCCTA +ACCCCCATACTATCAATTTTGGACTAGGAATTTAGGTTAACATCCCAGAC +CAAGAGCCTTCAAAGCTCTAAGCAAGTGAATCCACTTAATTCCTGCATAC +TAAGGACTGCGAGACTCTATCTCACATCAATTGAACGCAAATCAAACTCT +TTTATTAAGCTAAGCCCTTACTAGATTGGTGGGCTACCATCCCACGAAAT +TTTAGTTAACAGCTAAATACCCTAATCAACTGGCTTCAATCTACTTCTCC +CGCCGCCTAGAAAAAAAGGCGGGAGAAGCCCCGGCAGAAATTGAAGCTGC +TCCTTTGAATTTGCAATTCAATGTGAAAATTCACCACGGGACTTGATAAG +AAGAGGATTCCAACCCCTGTCTTTAGATTTACAGTCTAATGCTTACTCAG +CCATCTTACCTATGTTCATCAACCGCTGACTATTTTCAACTAACCACAAA +GACATCGGCACTCTGTACCTCCTATTCGGCGCTTGAGCTGGAATAGTAGG +AACTGCCCTAAGCCTCCTAATCCGTGCTGAATTAGGCCAACCTGGGACCC +TACTAGGAGATGATCAGATCTACAATGTCATTGTAACCGCCCATGCATTC +GTAATAATTTTCTTTATGGTCATACCCATTATAATCGGAGGATTCGGAAA +CTGATTAGTCCCCCTGATAATTGGAGCACCTGATATAGCTTTCCCCCGAA +TAAACAACATAAGCTTCTGATTACTTCCCCCATCATTCCTACTTCTTCTC +GCTTCCTCAATAATTGAAGCAGGTGCCGGAACAGGCTGAACCGTATATCC +TCCTCTAGCTGGAAATCTGGCGCATGCAGGAGCCTCTGTTGACTTAACCA +TTTTCTCTCTCCACCTAGCTGGGGTGTCCTCGATTTTAGGTGCCATCAAC +TTTATTACCACAATCATTAACATAAAACCACCAGCCCTATCCCAATATCA +AACCCCCCTATTCGTTTGATCTGTCCTTATTACGGCAGTACTCCTTCTCC +TAGCCCTCCCGGTCCTAGCAGCAGGCATTACCATGCTTCTCACAGACCGT +AACCTGAACACTACTTTCTTCGACCCCGCAGGAGGAGGGGATCCAATCCT +TTATCAACACCTATTCTGATTCTTCGGACACCCCGAAGTCTATATTCTTA +TCCTACCAGGCTTCGGTATAATCTCACACATCGTCACATACTACTCAGGT +AAAAAGGAACCTTTTGGCTACATGGGTATAGTGTGAGCTATAATATCCAT +TGGCTTTCTAGGCTTCATCGTATGGGCTCACCACATGTTTACAGTAGGGA +TAGACGTTGACACACGAGCATACTTCACATCAGCTACCATAATCATCGCT +ATCCCTACTGGTGTAAAAGTATTCAGCTGACTAGCCACCCTGCACGGAGG +AAATATCAAATGATCTCCAGCTATACTCTGAGCTCTAGGCTTCATCTTCT +TATTCACAGTAGGAGGTCTAACAGGAATCGTCCTAGCTAACTCATCCCTA +GATATTGTTCTCCACGATACTTATTATGTAGTAGCACATTTCCATTATGT +CCTGTCTATAGGAGCAGTCTTCGCCATTATGGGGGGATTTGTACACTGAT +TCCCTCTATTCTCAGGATACACACTCAACCAAACCTGAGCAAAAATCCAC +TTTACAATTATATTCGTAGGGGTAAATATAACCTTCTTCCCACAACATTT +CCTTGGCCTCTCAGGAATGCCACGACGCTATTCTGATTATCCAGACGCAT +ATACAACATGAAATACCATCTCATCCATAGGATCTTTTATCTCACTTACA +GCAGTGATACTAATAATTTTCATAATTTGAGAAGCGTTCGCATCCAAACG +AGAAGTGTCTACAGTAGAATTAACCTCAACTAATCTGGAATGACTACACG +GATGCCCCCCACCATACCACACATTTGAAGAACCCACCTACGTAAACCTA +AAAtaagaaaggaaggaatcgaaccccctctaactggtttcaagccaata +tcataaccactatgtctttctcCATCAATTGAGGTATTAGTAAAAATTAC +ATGACTTTGTCAAAGTTAAATTATAGGTTAAACCCCTATATACCTCTATG +GCCTACCCCTTCCAACTAGGATTCCAAGACGCAACATCCCCTATTATAGA +AGAACTCCTACACTTCCACGACCACACACTAATAATCGTATTCCTAATTA +GCTCTCTAGTATTATATATTATCTCATCAATACTAACAACTAAATTAACC +CATACCAGCACCATAGATGCTCAAGAAGTAGAGACAATTTGAACGATTTT +ACCAGCCATCATCCTTATTCTAATCGCCCTCCCATCCCTACGAATTCTAT +ATATAATAGATGAAATCAATAATCCGTCCCTCACAGTCAAAACAATAGGC +CACCAATGATACTGAAGCTACGAGTATACCGATTACGAAGACTTGACCTT +TGACTCCTACATGATCCCCACATCAGACCTAAAACCAGGAGAATTACGTC +TTCTAGAAGTCGACAATCGAGTGGTTCTCCCCATAGAAATAACCATCCGA +ATGCTAATTTCATCCGAAGACGTCCTACACTCATGAGCTGTGCCCTCCCT +AGGCCTAAAAACAGACGCTATCCCTGGGCGCCTAAATCAGACAACTCTCG +TGGCCTCTCGACCAGGACTTTACTACGGTCAATGCTCAGAGATCTGCGGA +TCAAACCACAGCTTTATACCAATTGTCCTTGAACTAGTTCCACTGAAACA +CTTCGAAGAATGATCTGCATCAATATTATAAAGTCACTAAGAAGCTATTA +TAGCATTAACCTTTTAAGTTAAAGATTGAGGGTTCAACCCCCTCCCTAGT +GATATGCCACAGTTGGATACATCAACATGATTTATTAATATCGTCTCAAT +AATCCTAACTCTATTTATTGTATTTCAACTAAAAATCTCAAAGCACTCCT +ATCCGACACACCCAGAAGTAAAGACAACCAAAATAACAAAACACTCTGCC +CCTTGAGAATCAAAATGAACGAAAATCTATTCGCCTCTTTCGCTACCCCA +ACAATAGTAGGCCTCCCTATTGTAATTCTGATCATCATATTTCCCAGCAT +CCTATTCCCCTCACCCAACCGACTAATCAACAATCGCCTAATCTCAATTC +AACAATGGCTAGTCCAACTTACATCAAAACAAATAATAGCTATCCATAAC +AGCAAAGGACAAACCTGAACTCTTATACTCATATCACTGATCCTATTCAT +TGGCTCAACAAACTTATTAGGCCTACTACCTCACTCATTTACACCAACAA +CACAACTATCAATAAACCTAGGCATAGCTATTCCCCTATGGGCAGGGACA +GTATTCATAGGCTTTCGTCACAAAACAAAAGCAGCCCTAGCCCACTTTCT +ACCTCAAGGGACGCCCATTTTCCTCATCCCCATACTAGTAATTATCGAGA +CTATCAGCCTATTTATTCAACCTGTAGCCCTAGCCGTGCGGCTAACCGCT +AACATTACCGCCGGACACCTCCTAATACACCTCATCGGAGGGGCAACACT +AGCCCTCATAAGCATCAGCCCCTCAACAGCCCTTATTACGTTTATCATCC +TAATTCTACTAACTATCCTCGAATTCGCAGTAGCTATAATCCAAGCCTAC +GTATTCACTCTCCTGGTAAGCCTTTACTTACACGACAACACCTAATGACC +CACCAAACCCACGCTTACCACATAGTAAACCCCAGCCCATGACCACTTAC +AGGAGCCCTATCAGCCCTCCTGATAACATCAGGACTAGCCATGTGATTTC +ACTTTAACTCAACCTTACTTCTAGCTATAGGGCTATTAACTAACATCCTT +ACCATATATCAATGATGACGAGACATCATCCGAGAAAGCACATTCCAAGG +CCATCACACATCAATCGTTCAAAAGGGACTCCGATATGGCATAATCCTTT +TTATTATCTCAGAAGTCTTCTTCTTCTCTGGCTTCTTCTGAGCCTTTTAC +CACTCAAGCCTAGCCCCCACACCCGAACTAGGCGGCTGCTGACCACCCAC +AGGTATCCACCCCTTAAACCCCCTAGAAGTCCCCTTACTCAACACCTCAG +TGCTCCTAGCATCTGGAGTCTCTATCACCTGAGCCCACCATAGCCTAATA +GAAGGAAACCGTAAAAATATGCTCCAAGGCCTATTCATCACAATTTCACT +AGGCGTATACTTCACCCTTCTCCAAGCCTCAGAATACTATGAAGCCTCAT +TTACTATTTCAGATGGAGTATACGGATCAACATTTTTCGTAGCAACAGGG +TTCCACGGACTACACGTAATTATCGGATCTACCTTCCTCATTGTATGTTT +CCTACGCCAACTAAAATTCCACTTTACATCCAGCCACCACTTCGGATTCG +AAGCAGCCGCTTGATACTGACACTTCGTCGACGTAGTCTGACTATTCTTG +TACGTCTCTATTTATTGATGAGGATCCTATTCTTTTAGTATTGACCAGTA +CAATTGACTTCCAATCAATCAGCTTCGGTATAACCCGAAAAAGAATAATA +AACCTCATACTGACACTCCTCACTAACACATTACTAGCCTCGCTACTCGT +ACTCATCGCATTCTGACTACCACAACTAAACATCTATGCAGAAAAAACCA +GCCCATATGAATGCGGATTTGACCCTATAGGGTCAGCACGCCTCCCCTTC +TCAATAAAATTTTTCTTAGTGGCCATTACATTTCTGCTATTCGACTTAGA +AATTGCCCTCCTATTACCCCTTCCATGAGCATCCCAAACAACTAACCTAA +ACACTATACTTATCATAGCACTAGTCCTAATCTCTCTTCTAGCCATCAGC +CTAGCCTACGAATGAACCCAAAAAGGACTAGAATGAACTGAGTATGGTAA +TTAGTTTAAACCAAAACAAATGATTTCGACTCATTAAACTATGATTAACT +TCATAATTACCAACATGTCACTAGTCCATATTAATATCTTCCTAGCATTC +ACAGTATCCCTCGTAGGCCTACTAATGTACCGATCCCACCTAATATCCTC +ACTCCTATGCCTAGAAGGAATAATACTATCACTATTCGTCATAGCAACCA +TAATAGTCCTAAACACCCACTTCACACTAGCTAGTATAATACCTATCATC +TTACTAGTATTTGCTGCCTGCGAACGAGCTCTAGGATTATCCCTACTAGT +CATAGTCTCCAATACTTATGGAGTAGACCACGTACAAAACCTTAACCTCC +TCCAATGCTAAAAATTATCATTCCCACAATCATACTTATGCCCCTTACAT +GACTATCAAAAAAGAATATAATCTGAATCAACACTACAACCTATAGTCTA +TTAATCAGCCTTATCAGCCTATCCCTCCTAAACCAACCTAGCAACAATAG +CCTAAACTTCTCACTAATATTCTTCTCCGATCCCCTATCAGCCCCACTTC +TGGTGTTGACAACATGACTACTGCCACTAATACTCATAGCCAGCCAACAC +CATCTATCTAAGGAACCACTAATCCGAAAAAAACTCTACATCACCATGCT +AACCATACTTCAAACTTTCCTAATCATGACTTTTACCGCCACAGAACTAA +TCTCCTTCTACATCCTATTTGAAGCCACATTAGTTCCAACACTAATTATC +ATCACCCGCTGAGGCAACCAAACAGAACGCCTGAACGCAGGCCTCTACTT +CCTATTCTACACACTAATAGGTTCCCTCCCACTCTTAGTTGCACTAATCT +CTATCCAAAACCTAACAGGCTCACTAAACTTCCTATTAATTCAATACTGA +AACCAAGCACTACCCGACTCTTGATCCAATATTTTCCTATGACTAGCATG +TATAATAGCATTCATAGTCAAAATACCGGTATATGGTCTTCACCTCTGAC +TCCCAAAAGCCCATGTAGAAGCCCCAATTGCCGGATCCATAGTGCTAGCA +GCCATTCTACTAAAACTAGGAGGCTACGGAATACTACGAATTACAACAAT +ACTAAACCCCCAAACTAGCTTTATAGCCTACCCCTTCCTCATACTATCCC +TGTGAGGAATAATCATAACTAGTTCCATCTGCTTGCGACAAACCGATCTA +AAATCACTTATTGCATACTCCTCTGTCAGCCACATAGCCCTAGTAATCGT +AGCCGTCCTCATCCAAACACCATGAAGTTATATAGGAGCTACAGCCCTAA +TAATCGCTCACGGCCTTACATCATCAATACTATTCTGCCTGGCAAACTCA +AATTACGAACGTACCCATAGCCGAACTATAATCCTAGCCCGCGGGCTTCA +AACACTTCTTCCCCTTATAGCAGCCTGATGACTATTAGCCAGCCTAACCA +ACCTGGCCCTCCCTCCCAGCATTAACCTAATTGGAGAGCTATTCGTAGTA +ATATCATCATTCTCATGATCAAATATTACCATTATCCTAATAGGAGCCAA +TATCACCATCACCGCCCTCTACTCCCTATACATACTAATCACAACACAAC +GAGGGAAATACACACACCATATCAACAGCATTAAACCTTCATTTACACGA +GAAAACGCACTCATGGCCCTCCACATGACTCCCCTACTACTCCTATCACT +TAACCCTAAAATTATCCTAGGCTTTACGTACTGTAAATATAGTTTAACAA +AAACACTAGATTGTGGATCTAGAAACAGAAACTTAATATTTCTTATTTAC +CGAGAAAGTATGCAAGAACTGCTAATTCATGCCCCCATGTCCAACAAACA +TGGCTCTCTCAAACTTTTAAAGGATAGGAGCTATCCGTTGGTCTTAGGAA +CCAAAAAATTGGTGCAACTCCAAATAAAAGTAATCAACATGTTCTCCTCC +CTCATACTAGTTTCACTATTAGTACTAACCCTCCCAATCATATTATCAAT +CTTCAATACCTACAAAAACAGCACGTTCCCGCATCATGTAAAAAACACTA +TCTCATATGCCTTCATTACTAGCCTAATTCCCACTATAATATTTATTCAC +TCTGGACAAGAAACAATTATCTCAAACTGACACTGAATAACCATACAAAC +CCTCAAACTATCCCTAAGCTTCAAACTAGATTACTTCTCAATAATTTTCG +TACCAGTAGCCCTATTCGTAACATGATCTATTATGGAATTCTCCCTATGA +TACATGCACTCAGATCCTTACATTACTCGATTTTTTAAATACTTACTTAC +ATTCCTCATCACTATAATAATTCTAGTCACAGCTAACAACCTTTTCCAAC +TGTTCATCGGATGGGAGGGAGTAGGCATCATGTCATTCTTACTAATCGGA +TGATGATACGGCCGAACAGATGCCAACACCGCGGCCCTTCAAGCAATCCT +TTATAACCGCATCGGGGATATCGGCTTCATCATGGCCATAGCCTGATTCC +TATTCAACACCAACACATGAGACCTCCAACAAATCTTCATACTCGACCCC +AACCTTACCAACCTCCCGCTCCTAGGCCTCCTCCTAGCCGCAACTGGCAA +ATCCGCTCAATTTGGACTCCACCCATGACTTCCTTCAGCCATAGAGGGCC +CTACACCAGTCTCAGCCCTACTCCACTCCAGCACAATAGTTGTAGCAGGC +GTCTTCCTGCTAATCCGCTTCCATCCACTAATAGAAAACAACAAAACAAT +CCAGTCACTTACCCTATGCCTAGGAGCCATCACCACACTATTCACAGCAA +TCTGCGCACTCACTCAAAACGATATCAAAAAAATCATTGCTTTCTCCACC +TCCAGCCAACTAGGCCTGATAATCGTAACCATCGGTATCAATCAACCCTA +CCTAGCATTCCTCCACATTTGCACTCACGCATTCTTCAAAGCTATACTAT +TTATATGTTCCGGATCCATTATCCACAGCCTAAATGACGAGCAAGATATC +CGAAAAATAGGCGGACTATTTAATGCAATACCCTTCACCACCACATCTCT +AATTATTGGCAGCCTTGCACTCACCGGAATTCCTTTCCTCACAGGCTTCT +ACTCCAAAGACCTCATCATCGAAACCGCCAACACATCGTACACCAACGCC +TGAGCCCTACTAATAACTCTCATTGCCACATCCCTCACAGCTGTCTACAG +TACCCGAATCATCTTCTTTGCACTCCTAGGGCAACCCCGCTTCCTCCCTC +TGACCTCAATCAACGAAAATAACCCCTTTCTAATTAACTCCATCAAACGC +CTCTTAATTGGCAGCATTTTTGCCGGATTCTTCATCTCCAACAATATCTA +CCCCACAACCGTCCCAGAAATAACCATACCTACTTACATAAAACTCACCG +CCCTCGCAGTAACCATCCTAGGATTTACACTAGCCCTAGAACTAAGCTTG +ATAACCCATAACTTAAAACTAGAACACTCCACCAACGTATTCAAATTCTC +CAACCTCCTAGGATACTACCCAACAATTATACACCGACTCCCACCGCTCG +CTAACCTATCAATAAGCCAAAAATCAGCATCACTTCTACTAGACTCAATC +TGACTAGAAAACATCCTGCCAAAATCTATCTCCCAGTTCCAAATAAAAAC +CTCGATCCTAATTTCCACCCAAAAAGGACAAATCAAATTATATTTCCTCT +CATTCCTCATCACCCTTACCCTAAGCATACTACTTTTTAATCTCCACGAG +TAACCTCTAAAATTACCAAGACCCCAACAAGCAACGATCAACCAGTCACA +ATCACAACCCAAGCCCCATAACTATACAATGCAGCAGCCCCTATAATTTC +CTCACTAAACGCCCCAGAATCTCCAGTATCATAAATAGCTCAAGCCCCCA +CACCACTAAACTTAAACACTACCCCCACTTCCTCACTCTTCAGAACATAT +AAAACCAACATAACCTCCATCAACAACCCTAAAAGAAATACCCCCATAAC +AGTCGTATTAGACACCCATACCTCAGGATACTGCTCAGTAGCCATAGCCG +TTGTATAACCAAAAACAACCAACATTCCTCCCAAATAAATCAAAAACACC +ATCAACCCCAAAAAGGACCCTCCAAAATTCATAATAATACCACAACCTAC +CCCTCCACTTACAATCAGCACTAAACCCCCATAAATAGGTGAAGGTTTTG +AAGAAAACCCCACAAAACTAACAACAAAAATAACACTCAAAATAAACACA +ATATATGTCATCATTATTCCCACGTGGAATCTAACCACGACCAATGACAT +GAAAAATCATCGTTGTATTTCAACTATAAGAACACCAATGACAAACATCC +GGAAATCTCACCCACTAATTAAAATCATCAATCACTCTTTTATTGACCTA +CCAGCCCCCTCAAACATTTCATCATGATGAAACTTCGGCTCCCTCCTAGG +AATCTGCCTAATCCTCCAAATCTTAACAGGCCTATTCCTAGCCATACACT +ACACATCAGACACGACAACTGCCTTCTCATCCGTCACTCACATCTGCCGA +GACGTTAACTACGGATGAATTATTCGCTACCTCCATGCCAACGGAGCATC +AATATTTTTTATCTGCCTCTTCATTCACGTAGGACGCGGCCTCTACTACG +GCTCTTACACATTCCTAGAGACATGAAACATTGGAATCATCCTACTTTTC +ACAGTTATAGCTACAGCATTCATGGGCTATGTCCTACCATGAGGCCAAAT +ATCCTTTTGAGGAGCAACAGTCATCACGAACCTCCTATCAGCAATTCCCT +ACATCGGTACTACCCTCGTCGAGTGAATCTGAGGTGGATTCTCAGTAGAC +AAAGCCACCCTTACCCGATTTTTTGCTTTCCACTTCATCCTACCCTTCAT +CATCACAGCCCTGGTAGTCGTACATTTACTATTTCTTCACGAAACAGGAT +CTAATAACCCCTCAGGAATCCCATCCGATATGGACAAAATCCCATTCCAC +CCATATTATACAATTAAAGACATCCTAGGACTCCTCCTCCTGATCTTGCT +CCTACTAACTCTAGTATTATTCTCCCCCGACCTCCTAGGAGACCCAGACA +ACTACACCCCAGCTAACCCTCTCAGCACTCCCCCTCATATTAAACCAGAA +TGGTACTTCCTGTTTGCCTACGCCATCCTACGCTCCATTCCCAACAAACT +AGGCGGCGTATTAGCCCTAATCCTCTCCATCCTGATCCTAGCACTCATCC +CCACCCTCCACATATCAAAACAACGAAGCATAATATTCCGGCCTCTCAGC +CAATGCGTATTCTGACTCTTAGTGGCAGACTTACTGACACTAACATGAAT +CGGCGGACAGCCAGTGGAACACCCATACGTAATTATCGGCCAACTGGCCT +CAATCCTCTACTTCTCCCTAATTCTCATTTTTATACCACTCGCAAGCACC +ATCGAAAACAATCTTCTAAAATGAAGAGTCCCTGTAGTATATCGCACATT +ACCCTGGTCTTGTAAACCAGAAAAGGGGGAAAACGTTTCCTCCCAAGGAC +TATCAAGGAAGAAGCTCTAGCTCCACCATCAACACCCAAAGCTGAAATTC +TACTTAAACTATTCCTTGATTTCTTCCCCTAAACGACAACAATTTACCCT +CATGTGCTATGTCAGTATCAGATTATACCCCCACATAACACCATACCCAC +CTGACATGCAATATCTTATGAATGGCCTATGTACGTCGTGCATTAAATTG +TCTGCCCCATGAATAATAAGCATGTACATAATATCATTTATCTTACATAA +GTACATTATATTATTGATCGTGCATACCCCATCCAAGTCAAATCATTTCC +AGTCAACACGCATATCACAGCCCATGTTCCACGAGCTTAATCACCAAGCC +GCGGGAAATCAGCAACCCTCCCAACTACGTGTCCCAATCCTCGCTCCGGG +CCCATCCAAACGTGGGGGTTTCTACAATGAAACTATACCTGGCATCTGGT +TCTTTCTTCAGGGCCATTCCCACCCAACCTCGCCCATTCTTTCCCCTTAA +ATAAGACATCTCGATGGACTAATGACTAATCAGCCCATGCTCACACATAA +CTGTGATTTCATGCATTTGGTATCTTTTTATATTTGGGGATGCTATGACT +CAGCTATGGCCGTCAAAGGCCTCGACGCAGTCAATTAAATTGAAGCTGGA +CTTAAATTGAACGTTATTCCTCCGCATCAGCAACCATAAGGTGTTATTCA +GTCCATGGTAGCGGGACATAGGAAACAAgtgcacctgtgcacctgtgcac +ctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacct +gtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgt +gcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgc +acctgtgcacctgtgcacctgtgcacctgtgcacctgtgcacctgtgcac +ctgtgcacctACCCGCGCAGTAAGCAAGTAATATAGCTTTCTTAATCAAA +CCCCCCCTACCCCCCATTAAACTCCACATATGTACATTCAACACAATCTT +GCCAAACCCCAAAAACAAGACTAAACAATGCACAATACTTCATGAAGCTT +AACCCTCGCATGCCAACCATAATAACTCAACACACCTAACAATCTTAACA +GAACTTTCCCCCCGCCATTAATACCAACATGCTACTTTAATCAATAAAAT +TTCCATAGACAGGCATCCCCCTAGATCTAATTTTCTAAATCTGTCAACCC +TTCTTCCCCC
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hg19chrX_midpart.fasta Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,751 @@ +>chrX_part +TCTGTTAGACTCACTCAGGACTGTATGAGCATCACCTGTGCTGCACTGTG +ACTTTACAGATATTAACGAAGAATCCTCAAGGATCTGTGTTTCGGAGGCA +ATCTGGTGACCAGCAGCATTCTCAGCATTCAAATGATGACCCTCAAAATA +GGCAGTAGCATTTTTATCTGCTCTGTCATTGGCTACAAAAGACGGCACCA +CTGGTACTGATCTTGGTAGCTGATATTCAGGAGAAAGGCTGACCAAGGGT +GTATATATGCTGGTGTACTGGGGCAAACCTGGTAACACATTTATGTATGC +TGGCGATGTCCGGGTGTTATCAAATCTCTGGAAAGGAAGATACGTACAGT +ATCCTGTGACCAAATGGGATTGAGCCCAATAAGTTGGTTTCACATCCTCA +AGAACCGGTTTGGGAGAATTAGAGGAGACTCGCTTGTAATTTGCATCCTC +AGAGCCTGGTTTGGGAGAATTAGAAGAGAACCCTTTGGGTTTCCCATCCT +CAGAAACTTGTCTAGAAGAATTATCGGATACTGGTTTGGCCTTCACATCT +TCACAAGCTGGCTTGGGAGAATTTGCAGACAAAGGTTTGGGTTTCACATC +TTCAGAAGCTGGTGCTGAAGATGAACCTGATACTGGTTTAGACTTTACAT +CTGGTTTAAATTCCCTAGCAGCTGAATTAAGTGGTAGTTTAACTTGTAAA +TACTCTCCTGCTTTTGAAATGTCTTCTACTTTTGTTTTAATGTTTTTCTT +CTTTCTTTTTTTCTTGAGCCGTGATGCAACTTTCTTCAATGCAATACAGT +TGTCAATCACAACAAAACGGGGACATCCCAAGAGAAAAGATTTTAAACCT +CCTGCTTTTTCTAGTATTGGTCGAGTTTCTTCTGGGAAAAACTCATATTC +TTCAGAGAACATCTTGTGACTCATGTCCAAGGGACCATGTTCCTCCAACA +ACTGAGAGAAGTAATCATATAGAGTTGAACATTTTTGTTTTGGGTTCATG +TCCCATAGCTTCTTATTGCGGACAACATATTCATTACTGTGTTGGTCATA +GAGAGCTTCAAATTCTTCTACGTCTTGCCGAAGATGGTCAGGCACTGCAA +ATGGGCCTGCAGTATCTGAATTTTGATTGCTATGGTCTTCACTTGAAGTG +ATGATCTCATTATTTGGAGTTACTGAAGTTGTTCCAGACCCAACTAACAT +AGGCTTTGAATCCTTTGGTTTCTTTTTCTTGCCTTTGTTTTTCACCTTGG +TAGAACTAAACGGTGCTTCGCCACTGTCTTGTTTCCTTAACACAGTACAG +CGGCTGTCCATTATATCAAAGAATTCATCTAAAGCACTATGTAATGCTGG +GAACTTGTCTCTGTGTTCTTCTAGCAGCCATATTAAACAGCGGGCTTCCT +TCGATGATGTTGGCTCAAAGAAATAATCAAGTTGCTTTCCTTCTATAGAG +TCTAGTTTGTGACCATATTTCTCATTCCAGAGGAAAGTCATGATGCTAAA +ATCAAGCTGTTTAAGAGATGCTTCATACCGAGAAAAGAAAGGTCCTGTGG +CATCTAAGCCAAAGCTATTAAGTTTTCGGATCCAGGCGGCTAATTTGGGC +TCCACTTCTTTAAGCTCACTCAAAACATGCAGAAATATTCTTGTCTTTAC +TCTGTTCTTTTCTTGAATCAAGTGACGAATAACATAGTCCACTGCTTCAT +TTAGAAAATTTCTGCTTGAAAAACAGGTTGTATAGTCCTCTGTGCTCAAA +ACTTTCCAAGAAAGTAATTCTTTGAGAAGCGTGGCTGTATTCCATATGCC +GGATTTAATCTTGTCAGCATACTGCTTTATACACTGTAGAATTCTGTCAT +CAAGGAACTGACAATGCTGAACATTGTCTACAGTTTCTTTCTGCTCTTCG +TTTTTGGGTGGATTACTTTCTCTTAAGTCCTCCTCCATTCTTTCTTGTGC +TAATTTTTTTGCTTCTTTTTTTTGGATCTTTCTCTTCAATTTTTTGTCTT +CTTTCAGTCTTAGTTTCTCTAGGCTAGAACATTTCTGTTTCAGAATAGGT +CTTGGAGGAACCTTTTCTTTTATGACCTTGTGTTCAAATTCACATTTAAC +TTGACCACCACTGCTGAAGATGATAATCTTAGAAATGACACCTTCACAGT +CAGGGGTAAGACATATTCCTTGTAGAAAATCCTTGTCAATTTTATCATTA +AAGGTTGTGGTTTTTAACTTCTTCCAGCAATTCATGTGAAATTCTATTTT +ACAGTACTGGCAACAGCTGATGCGTATAAAACCCTTAAAGTCTGGATCAG +TTATGTATATCTGGATCTTAGAATATCCACAGCACTTCTGATAGCAACAA +ATGGCATCTGGCACTGGAGGGAACTTGCATTCTTCAACAAATTTCTCTAA +CAGCATCTTTATTTTTTCTGGCTGAGACTCTTCAATAATCACATTACTTG +TGGGCCAAGTTAACACTCCAGGAAGACGATAAATCAAGGTTCTTGCTTTC +TCAAAGTGATTGAGAGCTTCTAGAAATCTGTTTTTTTTCAAATATACTTT +TCCAATTCCACAGTAGGCCAAGCAATCAAGTCCCTCATTGTGGTAGTGTT +CAATAATCCTCTTAAACTGGTTTTCAGCTTCAGATAGTTCTTCAGGCTGT +CCTATTCCAAGGAGTGAAATGGCAAGTCCATAGACAACCAAGACATAGTT +AATCATGGCCAGATTCAATTGCTTTATTTTTTGAGGATCTAAACCATTCA +GCAACTCTGTAAAGGCATGTGCGGCACTGCGGCAACGCTGCTCCAATAAG +GCTGTATAGCCATCTTGAATTAAGCTTCTCAGCATTGTCATTATATTAGC +AAAATCCTGGTGTGCACCTCTGGAAGATTTAGAAAACTGTTTCTCCAAGA +TGTTCTTCAAATCTGCTGGTAAAGTCAATTGTGAACTAGAACTGAACTTT +TCTGATTCATTGTTTCGAGATTTTTGTTTTCCTTTATGTTTCGGAGGCTG +ACTTGATGGTGGTGAAAATTCAGGATGACAGTCACAATCATCTACCATCA +ATGCCTCATCCATCACCTTTAGATTCTGATTACCACCGTTAGCCATTTCG +TGATTAATTTTTCTGAAATCTCTTTCCTTCTCCACAAAGTTAAGTGAAGT +ACTAAATACAGGTGCTGATAAACTCCTAGGTGTGTAGGCCCTGTTTTCAT +AAAAGGCTTTAATTGGATTCTTATTTGCTGTTCGACCTTGTAGGTCTTCT +ATTTGTTTTTGTAACTTTACATGCTGCTGAATTAGATCCTTGATTCCCTC +AGGGTCATTTTTACAGAGTTTTTGAGCTGTTATGTTTGCTTGCAGGGCCC +AGTTATATTCCCCCAGCATAGAAAGAGCATCACAATAACGATAATGACCC +TTTGGCCAAGTGTTCTTCAGAATAGTGGCTCTCTTTCCATCACCAAGTGC +ATTTCTAAACTGTCCAGTACGAAGAAAACAAAGAGCTCGGTTACCATAAA +GAAGGTGGTTTTCAGGTCTATATTCAATGGCTCTGGTGTAATAGATAATA +GCTATATCAAATCTTTCTTTGGAAAACTCTTCATTTCCTTTCATTTTCAT +TAGTTCTCCTTGCTCTATACAATCCATACAACTTTGGGTTTTAAGTTCTT +CAAGCAAATTGCAGTCTTCCATTACAATTTTAGTTATGTGGTACTTGTAT +TCAGTAAAGAAAATACTTAACATAGGCCAACAATTGTCAATTGATCCTAA +TTTAGTTAGAATTGTTACATCGCCTGCATATTTTATCCAATTCAGAGCTT +CTTCCATTGCCAAGATTTTATTTTCTATTTTATAACCAATTCTCAATAAG +CCTCCAATAAGGAGTGAATCATTAGCAGCTTTCTTTGCCAAATCCACAAT +ATCTTCCATCAACTCAAGATGTTGTAATCTCTTCAAATTTATCTCGGAAG +CACGTGAATTGTTGGCGTCCACACAGGGATGCAATCGTGATATTACAGAA +CTGTTTTGATGTTGAAACAGAAGTGGCCAGAAGATGTTTATTTTAATGGC +ATCACAATAATCTTGCAGGACAGAAATTGGTTTACTACACCATATACTGC +AGATGTCAAATTCTAAATTCCTCTCACTTTGGACATAATCTTTATATTGC +TTACCCACCCCATCACAGTAAAGCTGAGTCACACGAACATAATCATCGGT +CATAAATTCAGCAGCAAAGACACAATCGTCCACGTAAGGGCAATCTTCTA +ACAAGGCATAATCCGCCATAGTGAAATCTCCCTCAGCAAAATTGTCCGTG +ATGCACAAGTCACGCACACACGGAGGGGTGTGGAAGGCCCCGCTCCCCTG +GCATCTCGGCTGCAGCGGGACCAGGTAACACATCCGGGAGCCCGGCCGCG +CGCCGGGTGTGCACTCACCCGGGCCTGCCGCCCGCGAGCCTGGGACGCAG +GCATccgccgccgccgccgccgccaccgccgccgccgccgcggccgccgc +cgcagcagccgccgctgccgccgccgccgccgctgctgccgctgccgctt +ccgccgccgccgccgccacctccgGCCCTCTACGTCAGCGGACGGTGGGA +GGGAGCGAGTGCTTTTAACTGTTTCGGTGTCAATACTGACCACAGTCATT +ATTTTCTCCGGCTGTACTTTAAAGTCTTAATGGTTGAAGCCATGTATCCT +TTGCCCACAGACCAGAGGAAGGGGAACCAGGTTCTTTCAGGAAAGTGCAT +GGGGGATGCCTCTCTCTCATCATGTCCCCTGACTCCCAGGTGTAATCATA +ATCTCCTCATGGAAGTGCCAGGCACATAGAGAGTGCTCTTCCTGCTGCCT +CCACTCCTGCTAGACAGAGCCCTGTCAAGGTCATCCTAAGGGCTGGGATC +CACTAACAGCTTTGACCTTAAAGCAGAGTCTGATATTGGGGATGTCATTT +CTTCACTCTGATGTACTAATTTTTTTTTTTATCTATACGCTGATGAGAGG +CTGCTCAGACACCTGCAAATTAGCATCACACTCCCCTAGGTTCTCTAGCA +AGATATTCTGGGAGGAAAACCTCTGAATCTTATTTCTACCTGTTGCTCAA +GGAAGGGACTGTTTCCAAAGAAAATCACAGTCGTATACAGGGGAGCTTTT +CTGTGTCCCTTTTTCTCCTTTGTTCCTTTTCCCCTCTCTCTCTTTTAATG +GCACCCATTTCTTCCCATCACTTAGAATCACTGAGAATCTTTTTTTACCC +TGGCTTATAAATTGTGTAGAATTCCTGTAAAGTATGGTGCTCCTTTGTCT +GTTTCCATTGTCTCTGACCTAATTTTTGACTGACTGGCCATTTACCTGAT +CCACTTtaaaagccaggagaactgtgttctcatttcagaagaaactgtgt +taccctggccagttttcttcccttttctgggattcatttcatctgtaaaa +tggggggCGGGGGTTGACCATCCTGGGTTCTATCTGGAGGTCGATGGGAG +TCAGagagagagctctgacatggtgatgcagggccttgaactccactcac +agctctgctgctaacctagcatgtgatttagttctagtccctttccactt +ctgagcctcagttccccatctAAGCAGCCATGACTGACAAGGGAGAAGTC +TTAGACTCCCACAAATGAGGACCTTGATCCCCTAACATGACTGTGTGTTC +ATAAGACCCGTATCCTCTGATCTTGAGCAGATAGAGCCTTTTCTTATCCT +CTGGATTGCTTCTTGGAAATGGCTGTAGCGAAAGCCTCTTCTTTTGTGCT +TGATACTTTATTTTCCCAGGTAAGCTCCCTCTACCTTTGTCCTGGGGCAT +GTATTTATGGATATTTTAGTTAGAAAAAGCTATCAATTAGTGTAATTAGC +TTATTGTCACCTTCAATCTTGACCCTCTCCCTGCACTGTCCCCTACCCAC +CTCAGGTTCTCTCTTATTTTAACTTAGTGAGCAGAGCTCCTGGCTGCATC +ACCATAGCAACCAGCAGCTAGGACCTATTAAGCCATGATGAGTCATTAGA +CATCTAAGCTGATTATAGAGTCCAGAATGTTAACTGCAGAAGAGATGCTG +AAAGAAGGAAAATGAGGCAGATCTTAACCTACAAACAAGTAGACAACAGA +GTAGCTGAGTGCTTCAAACTATCCCCGACCTGGATGCCATGGGCGCTATG +GGCCTGGGTGTCAACACCTTGGCATGTACCCTCAGCCACCAGACCAGAGG +GAGGGGCACCAGGCCCATTCTCTTCCCAGGGAAGTAATTCTGGACACCTT +CCTGCCAACATGCTCCAAGTAGATGGATTTGAGTCTGGATTTTTCAATGG +GCAGTACCAATTACTGAGTTCATCCTGAGTCCTACTCCTAATCTAGTGAC +ACATTTCCTTATCTTTCAACTTTCCATAGAAGTTTCTTAAATGAAAAAGG +GCATTTTTTTTTTTACTTGTTTGAAACTCTCTTTTCCCAGTCAGTTCCCC +TGCTGCCTTGGCCTGTATTTGTGGCCTGTTAAATTTAAAAGTCTATCAGT +TAGTCTAATTAGGATATTCAAATTTTAATTATTTTCCCTTCTCCACATGG +GCAGCCACCCACCCTTCTTTTATTCTCTCTTTTTATTTCATTTAGGGAAA +AAAGCTCTTGGCAGGATTGCTATAGAAACCAGCCACCAGGCAGACTAGGC +CATTGTGCTTCTGGACACTGATACTCAAAGCTGATTATGGGTCTGGAAGC +TTGCATGGCTGAGCAAGACTGATGGAGTTAAGACAAAGAGGGTCTCAGCT +ACAGAGAAGGGGAAAATAAGCACCTCAGAACTTTAGACAAACCTCAGCCC +TACCTTTATCTTTGCCCCTGTATGCTTCATGGAAGAAAAAAGTTAGAATG +AGGAAGGCTGTCCCCTATTAAAGATGAATGTCTGGGTTGACATCAGAACT +TGTGCCCTTAGGCTAACCCTGCCATGACGACAAACCCACACCTGTGAACA +TGTCATTTTCACTGAGTATCCCTAGTTCCTATTAAATTACCTGGCATATA +CTTAAGGTTCTCATAGTGCTTGGTGCTCAGCAATTCTGTAAGACAGAGCA +CTACTAGTGAGAGCACACTGAGACTACCTTGGAACATGAGCAAGTGAAGA +CTTCCTAACACACTGGATTTTTCTGGGAAATGACACTAATGAAAGCCTCT +GCTATGTGCTCTAAGGCTCCCTGTTTGCAATTTACCTCCCCTGCCTTCTG +GCAGTGGTGGTGTAAATGCCTGGTGGAGGGGCTTTGAAAGCTGTTAGTCA +CTGAAGTACCTAAGTGTATTAGGCTATTATTGCCTTCAAGGATTTTCCCC +TGGTCCCACAATGCACCCCTGTCTACATTAACAGGCTCCCACTCATTTAC +ACTGGGAGAGCAGTGCTCCTGGACACATTGCCATAGCAACCAGAAGCCAG +ACAGAGTAGGAGGGTGAGCCAGACATTTGACAGCAAAGGTTAGTGGAGTA +TCTGTTGGAGAGGGGCTGACTCTTAGGAGGAAAATACCTTATCTCTCAGC +TGCAGAGAAATAGGCCACTAGGCCCCTCAGTGTTCCAACACCATCCCCTC +CCCATCCTCCATCCCCATGCCTCCAGATGAGGAGTAGTCAGAATGAGTTT +TGTTTTATCTGGAGGCCAAGGCCTGTGTTTTATCAGAATAGGTATCCTTT +GCCCCGAAGCCGGTCAAGGGAACCAGGTACCACATACTTCCTCCTACGCC +ACCTTGTTACCAAACTAACACCCATGAGTGAACATATGCTCCAAATGTGt +gttcccatgactgcatctcctgtgcctagaatagtgtcaagtatatggca +gTGCAACTTTctgcacttcccctgtctactcactccattgcagttcacac +cttatcatttgcagaattccatttactactggaatacccactgtattagt +ctgtcctcatgctgctaataaagacatacccgagactggacaatttacaa +cagaaagaggtttaatggacttacagtttcttgtggctggggaggcctca +caatcacagctgaagatgaaaggcacatctcacatagtggcagacaagag +aagagagcttgtgcagggaaacttctctttttaaaaccatcagatcttgt +gagacttattcattatcatgaagaacagcacaggaaagaactgcccccat +gattcaattacctcctaacgggtccctcccacaacatgtgggaattcaag +atgagatttgggtaaggacacagccaaaccatatcagccacagtctcaac +tgatgacactgagaacatgaaagtaaaggaatagcctttaaaaacttctc +acttccatgcatctgcaacttgatactctgctttccctttcatcactatg 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+ACAGATTAACAGATTCCAGTTTAAAAAGTGCTATAACCCTGAAGGGGGTG +GGGTATGTTGGTAGATAAGAGAAGTTAGATCTTTAATAAATCCCACAAAT +TATTCTGGGCAATTTATTTACTGAGAATTTTTAACTCTCAAGTGTTAAGA +TTTTCCTAGATAATCATTTGTTTAATTCAGGTTTTCAAAAGCATTTACTT +CAGACTCCTTTTATTCTCTTAATTTCTTTTCTATTGCTGTTTTAAAAACA +AACAAAAAAAATACTTAGTGACTCAATTAAAAAATATTATTGGTGAGGGG +ATGAAGCACAGTTTCAAAGAGTTACAAATTAAAAATATTAATTGGCATCT +GAATTGCAAGAATCCATTTACCTCCACTCTCTAAGCTCTAATGATGTTTG +TGTCCCCAAGTCAAGTTCCAAAGTAACCATTATTCCCAATAGGTAAAATT +CCTCTGACCTCTGGTCCTGTTGAACCTTAAGGCTTACCATAAAATTGCTT +CAAATTGCAAGAAATGAGCGTGGAATTCTTCCCTCCCCCTAGCCAAGGCC +TGTTCTAGTTACAACCAACAGTCGATAAATCCCAGTGCTTCTCCCATAGT +CCCAACCCTCTCGTGCACTCTCACTACCTCATTGAGGGCTTTGGAGTTTC +CAGGATACAGCATACGAGTCTTACCAAAATCCCAGATGGGGCACCTCTCA +GTCATAACTTAAGAAGATGCTCTCAGATCTTGACTCCCAGATTCAGCCCA +GACTCACTATGATCTTGAAGTGCCTTGTGAACTTTAACAAATGGCCCATC +CTGTCCCCAGTCTCTGGTGCATAAACTGTTTCCCACATCAATCACGAGCA +CAGGTTCTATGCCATCCAACACTGCATTGTTCCTTGACATGTTTTTTTTT +TTTGTTTGTGCAGTCAACACATAATTGATGAGGCACATTCTACATGACAG +GCACTACACAAGAGACTGAGGGGTGAACTGATTAGCACCCTGCCCCTTTG +GTGACCTGTTAAGATATAATAATAATGGTCATACTGAGCTCTGAGAGTAA +AATAAAAACAGCAGTACACTCAGGAGGGGCCAAAAATATTCCATTCCTTC +CTTCCCCATCAACTTTTTATTTGTGGATCCTCAAGGCCGAATGATCCTGG +AAGACCCCTGTCTGCATAAAGACATTTATTTGTGGCCTTTCATTTCAAGT +AATTGAGTTTTGATATCTATACCAAACAAAGAAACGTCCAGACCCCCATC +ACATTATAGCTTCCCCTAAACAGTTGTTTGCAACAAACAGGTTCAGTAAG +TGACCAGTTATAAGATTAATATATAAGAAAATAGCTTTCCAGTGACTAAA +ATCCAGCTGGAAGGGCAAGGAAGTTTTACTTCATTACTGCATCTCCTAAG +AAGCTTACTAAGTCTCTGTTTCCCAAATATGTGAAAAGCAATAAGTTGCT +TCTAGGGTAAGAAGCAATAATGTATGTGTATGGAATGAACTGGCATTCAC +CTGAAGCTCAATAAAAGTTATTCCCTTCCCTTTGGAAAAAAAAAACCCAG +TTCTCAAGGTGGGACTACAGAAAATGTTTGCTTTTCATCAATTCTTTAGG +TAATTTTGAGCTTCATCTTGGGGCTGAGAATTTGGGTCAGGACCTATTGA +GAATAGCCACCACTCACCTCAAAAGAGATCACATCAGGAGGTTCATAATC +TGTTTCTATCTTTCAAGTATTCTTATTGCTTTTTCACATTTCTCTTTCAG +TACCTTACAATGGAAATATGGGCATTTCATAAAACAGAACGAGATAGTCA +TGTGCACAGCATTATCAGGGCCAAGCTTTGGAAAAATGGACTCTGATATT +CAGGACAATATCCTTAGCAAAGGGCAATTTTGATTCTCAAACGCGGACCA +GCAAAGTGCTTTGCAGTCTAATGATCCAAGCCTACCTCCAGTTTTTCTTT +TGACATCTGAAGCCTTGAACTGATTCCGGTTGCAACCACTTTACAATGAA +GGTTTTAAAATCCCTAACACACAATTCTATCAACCCTTACTCTTCAATCA +GTCAAGTACCCTACGTTTCCAATCCTAGAAATTAGGCTGCCTCCATTCCC +TGATATATAGAATGCTTTCAAATTTATAATCCAGTGCCAAGTCTTGCTTC +CATCCCTGACTTTTTTACTTTCTTAAGAATCAGAAACCATGAAGAATTCT +GGGCCCCTTGCTGATCAGCACAGTGCTATGAGAATTTCACAAGCCAAGGA +CAGTACAGATCCAGAAATCCTGTTTTATAAACTGTGTCAAGATTCAAAGT +CCATTTTCttttttattattattatactttaagttctagggtacatatgc +acaacgtgcaggtttgttacatatgtatacatgcgcccttttggtatgct +gcacccattaactcatcatttactctaggtatatctcctaatgctacacc +tcccccctccccccaccccacggcaggcccccgtgtgtgatgttccccat +gctgtgtccaagtgttctcattgttcagttcccacctatgagtgagaaca +tgcggtgtttagttttttgtccttgccatagtttgctgagaatgatggtt +tccagcttcatccatgtccttgcaaaggacatgaactcatccttttttat +ggctgcatactattccatggtgtatatgtgccacattttcttaatcaggt +ctatcattgatggacatttgggttggttccaagtctgtgatattgtgaat +agtgtcacaataaacatatgtgtgcatgtgtctttatagcagcaggattt +ataatcctttgggtatatactcagtaatgggatggcttggtcaaatggaa 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+AGAAGTTTCCTTCCTTTCTTTCCTTCTGTTCAGTGTTGTGACCTCAAATA +AGGGGCACAGATGCCTCCTCGGGCAGCTTGGGGCAAGTGATCTACTTTCT +TTTTTTTTTCTTTTTTAAAAttttattattattatactttaagttttagg +gtacatgtgcacaacgtgcaggtttgttacatatgtatacatgtgccctt +ttggtgtgctgcacctattaactcatcattaagcattaggtatatctcct +aatgctatccctcctcactccccccaccccaccacagtccccggtgtgta +atgttccccttcctgtgtccatgtattctgattgttcaattcccacctat +gagtgagaacatgcggtgtttggttttttgtccttgtgatagtttgctga +gaatgatggtttgcagcttcatccatgtccccacaaaggacatgaactca +tcattttttatggctgcatagtattccatggtgtatatgtgccacatttt +cttaatccagtctatcattgttggacatttgggttggttccaagtctttg +ctattgtgaatagtgctgcaataaacgtacgtgtgcatgtgtctttatag +cagcaggatttataatcctttgggtatatactcagtaatgagatggctgg +gtcaaatggtatttctagttctagatccctgaggaatcgccacaccgact +tccacaatggttgagctagttcacagtcccaccaacagtgtaaaagtgtt +cctatttctccacatcctctccagcacctgttgtttcctgactttttaat +gatcaccattctaactggtgtgagatggtactcattgtggttttgatttg +catttctctgatggccagtgatgatgagcattttttcatgtgtcttttgg +ctccataaatgtcttcttttgagaagtgtctgttcatatccttcgtccac 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+tgctttttttctcatttttgtgggctgatgtttcttcaataattgatgtt +cctgtttctttggaaagcattgggtagatttttttgtcttctttgatgtc +tttaggggtttggttgtggtagactcagtcaacagactttgtttctggaa +gattttaggaggccaaggctcacctcaggactcctgggcctcatgtacta +actctggggggctgatattaggtccccacctttgttctttggcttcttga +tattaggaacctgctgtgctagaggggttgatgtattccaaggctggtgg +ttacaacactccaatgggtggtgccaatcaaacacttcactgggtggtgg +cagtagaatctatgctaattcccacctgccagcagtggtggaatcacagc +atggtgcacactcattggctggataaggagtctggaaggcacagggttgc +cagcttccatgtgggcatttatagtagcagtggtggtggcacagtatgtg +ggaggggtggggctgttgatttccattcatgcattcatgttggtggcagt +gttggtgtggaagcatgacaccggcagatatgaaactagtgccctccatg +catgcattcacacaagcagcagtggcaacacagggtggaggccagggctt +ctggtctctatgcacacatgcaagcaatggtggtgcagcaggagtgggca +gggtgtgctcacatacagagtagtggcatagtggggtgcatacataaatg +catgctggcagggaagggagttgaggtcaaccagcatgcacatgcactga +caaagcaatgtcaggggtagctgtgggcaaatttgtgctgccaaaggggc +acagaggaggctgtagttgggggagtgtgtgggtgggcttgtgtgcacca +gtagaagctgctctgctggagctctgcaaatgtgaggcatggtctgtcag +tgcaggaactgtgatgtgtgtctccaggaggcattccagctgggcaccca +aggctgcactgcaagcatgtgcactaggggagtaaaggtgagccttgggg +gatggacatccctggctgtactccactgacgacactcacacaccaaatcc +cttgggttccacactggctggtcttctgcctctaccacttctctaagcag +ctctgcctgccactacaagtgtccatgcaggttagggggtctcctgctgc +cagaattccagagatccatggtgtgggcaggttgctcctcacctgctcaa +cttaccttttccctgggagtggctggtggccaggaacaagtcccagtgca +tggaagtcccttgcagggttcccaccttcctttctctatagcccagcatc +tgagtcttccctccatcaattctcattgtctttcctccaaatatatgctt +ggagtgtgccaggcttcccaatgtcctagtctcttggtggcagatatttc +acttggctgcactgagtgagccaccttgccTATAATTTTTagaaggcttt +taactagatattatctcatttatccatttttgctttggttgtctgtgctt +gtgaggtactactcgaatctttgcctagtccagtgtcttggagaatttct +gtgatattttcttgtagtagttttatagtttgaagtgttagatAATAATC +AGACTCAACAAATGGCAGAATTCACAATTAATGAAACACACAATAGTAGA +TCAATGTAAAAATAACTTTAAAGATAAATCTGGTTTAAATATTGAAAGAG +ACGAAAAAGGGACTGTAATTTGTAAGACAAGAACAGGAATCTTCTTTAAC +AATAAGGTATATTTTAAAAAAGAAACAACTGGAAATTTTATAAATGAAAC +AGGTATGCACTGAAATAAAACCATTAATAGATTGCTCATATATTTCGACA +GAGTCAAGGCTGAGTATTGAGTTAGAACACAGATTAgacaggggtcacat +ctaattcatccctgtaccccagtgtctaatacaATAAGGCCAACATATAA +CAAGTGTTTCAAAATTGCTTATTAAATTGAACTGGGTAAGTGGTCTTCAG +ATAGGCCAGACATCTCTGGGCTTCTCCAGTGTATAGGGGTTTCAGGGGGG +CAGGACAGCCTCAAGTGGAACTACCTGAGGGCTGGGCAGAGCTGGGTGTG +GTTCCTCGTGGGTGGAGTAGGCAATAAAGGCTATCTAGAAAAGAGGTACT +GGCTTTACCATTCACCTCAGGGACTAACTAGTTTGTTCCCTCTCAGAGCT +GGAGAGTGAATTATCTTCATTCAGCACATGTCTGGCTACTATTCATCCTC +CCCGTGTCAAAGAtacttaaagtagtgaaaacagatcttattcagtaact +actaacaatgctgaaaaaagctgagctccattccaatttgtgcaaaggtg +gtttgggcattttaaagggagaatgatgttgggggctgagtagagtcaga +gaagtgaaaactacaaaatattggtcagtgtaaatgcactgtgtttaggc +catctgtgtttgttagccggcagttatcaaagttaggatttgtccttcca +cagagactggaagacagggttcctatctttcttgattacatttcaaagaa +atggctctcaggtccttgggagagacatttctaaattgtaagagatacat +attcactgtaataagcccttttaaataagtgctctaaaaaagggaggtca +gggtcttatcatcagattttggcaagaacaaacagtatattttcctggca +gcattgaactttctcaggcagtcattttagtggggtttggggtcaattat +agggacccagccttaggctgtgagaaaccatgctagagtttagttagttc +ccttactactacaggggtttggacagaagtgttagttccaggagttctgc +agttctcCCCTGTTAGAAACTCTAAGGATGTCCATGGCTATATTTATGTG +ACAAAACATTATATAAATGGTTGATGTTAACAACCTGCCAAAGATTATTT +TTCTTACTCCCTCCCTCCTAGGCCTTTTGCAACCCCCACCCCCATTACAG +AGAAAGGGGAACAATCCTGTGTGCAACCAGCTCTCCATACCTGGCCCCCA +CAGCTGGATCTCAGGGTGATCTCCTTTACCACCTGGAATGATAAATACCT +TCTTCCAGGACAGCAGCCCTCTTTATCTTGCAGAAGGAGGCAATCCAGGC +TGGGTCCTTCGCCAGGGTACCATTTTCCTGCAGCCTCTACAGGAAAATAA +GCTCGTCTGAGCTGTGGCCTGAGCAGGTCAAGTCTTCAGTAGAGAGGTCA +ACTTTAGAAACAATGGCTATTCTTGTGTCTTCCCTTTCTCTATCCTCCTT +CCCTTCTATATTACCAAAGAAGTGAACACTTAGAGGACAGAAACTTTATC +CTGTCTAGCCCATGCCAAAGAAGATGTTCTCAAGAGAAGAACAGTTTGAA +AGAGGCTGCTTGGACCTTAGGCCTCAGCTCCCAACTCCCTCCCTAACTCT +TTCCCCTTAGAAAGGAAATCATCCTCACTGACTGAAGCCCTGAGTGGCAA +GTCAGCAGGTGGTTTCCTGTAGGACACTGAGGTCTGCTTAAATAGACCAC +CCATATGCTTCCATAAAAATATCTTGTGTATTGGAGTCTACAAATAATAT +ATTCTTGATGCACCTAAACCTCACTAATTCATAACCACCTGGGGTTAACA +TTTGCCTGAAGTATTTTCTAAAGAAAACAAAGACTAGTGATTCTAACAAC +CCAGATGTTGTTTGACTTCAGCTACCCAGGTGTTGACAAGTAGTAGTTTT +AAAAGCAGTTGTATGGCATGGAAATATCACTAGACTAAGATACAACTGGT +TTGGGTCACAGTTCTGAAATCATCAAATGGTAGATATGTGACTGGGATTT +TCTATCAATTTATTGAAAACAGCATTAAGTggcctagaaagatgtgagta +actttcccaagttcacacagctagtaagtgacagaaaaagtaccgtccag +atctagagttcttaaccattccaaatatattgccccatccTTATCAGGTG +CTTGTTTATTCCTATGGTTTCTAGAGAGCAAAAGTATTAATATTTCAGGG +TACACTTTTTTGCAACTTTTTTTGGCAACTATCTTCAAATCCTGCCTGCA +GAGAATTCCTAAAGATATTGTTGAGCACTCATTGAGATGGAAGACAAACC +CTGTTCAACGAGAAATCTTACTGTCTGGAGATCCCCTCTAAGAAAGAAGA +AGGAGACTGCAGGGGTCTTGTCTGAACATGAAAGACACTTATGAGTTGGt +ctagattgtcagtattggaggatttaggggcagcaatccttggggcaggg +ggaatttccttgaaatccacatatgccagtctagctcagcttttgcttgg
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/phiX.fasta Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,79 @@ +>phiX174 +GAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTT +GATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAA +ATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACTAACGATTCTG +TCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTA +GATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATC +TGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTT +TCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTT +CGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCT +TGCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG +TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTAC +GGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTA +CGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAG +TGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACT +AAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGC +CCCTTACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCA +TCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGCTGGCGAC +TCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTA +CTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAA +GGATGGTGTTAATGCCACTCCTCTCCCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTT +GGCACGATTAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACA +ACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAAGATGATGC +TCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTCCTCCTGAGACTGAGCTT +TCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGC +ATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCGTGATGTTATTTCTTCATTTGGAGGTAAAAC +CTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTT +GATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGC +CGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTACTGCGAC +TAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATATTGCTGGCGACCCTGTTTTG +TATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGTTTTCCGTTCTGGTGATTCGTCTAAGAAGT +TTAAGATTGCTGAGGGTCAGTGGTATCGTTATGCGCCTTCGTATGTTTCTCCTGCTTATCACCTTCTTGA +AGGCTTCCCATTCATTCAGGAACCGCCTTCTGGTGATTTGCAAGAACGCGTACTTATTCGCCACCATGAT +TATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTAATGTGACCGTTT +ATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGATAAAAGATTGAGTGTGAGGTTATAAC +GCCGAAGCGGTAAAAATTTTAATTTTTGCCGCTGAGGGGTTGACCAAGCGAAGCGCGGTAGGTTTTCTGC +TTAGGAGTTTAATCATGTTTCAGACTTTTATTTCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGT +TCTCACTTCTGTTACTCCAGCTTCTTCGGCACCTGTTTTACAGACACCTAAAGCTACATCGTCAACGTTA +TATTTTGATAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTG +TCAACGCCGCTAATCAGGTTGTTTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGC +CTGTTTGGTTCGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTATGATGTTTATCCTTTG +AATGGTCGCCATGATGGTGGTTATTATACCGTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGC +CGGGCAATAATGTTTATGTTGGTTTCATGGTTTGGTCTAACTTTACCGCTACTAAATGCCGCGGATTGGT +TTCGCTGAATCAGGTTATTAAAGAGATTATTTGTCTCCAGCCACTTAAGTGAGGTGATTTATGTTTGGTG +CTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAAATTGTTTGGAGGCGGTCAAAA +AGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTACCGATAACAATACTGTAGGCATGGGTGATGCT +GGTATTAAATCTGCCATTCAAGGCTCTAATGTTCCTAACCCTGATGAGGCCGCCCCTAGTTTTGTTTCTG +GTGCTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGA +TAAGTTGCTTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATTAT +CTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCTCTGCTGGTATGG +TTGACGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGA +GATGCAAAATGAGACTCAAAAAGAGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGAC +CAGGTATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTA +TGGAAAACACCAATCTTTCCAAGCAACAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCA +AACGGCTGGTCAGTATTTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGAC +TTAGTTCATCAGCAAACGCAGAATCAGCGGTATGGCTCTTCTCATATTGGCGCTACTGCAAAGGATATTT +CTAATGTCGTCACTGATGCTGCTTCTGGTGTGGTTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGA +TACTTGGAACAATTTCTGGAAAGACGGTAAAGCTGATGGTATTGGCTCTAATTTGTCTAGGAAATAACCG +TCAGGATTGACACCCTCCCAATTGTATGTTTTCATGCCTCCAAATCTTGGAGGCTTTTTTATGGTTCGTT +CTTATTACCCTTCTGAATGTCACGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGCTAT +TGAGGCTTGTGGCATTTCTACTCTTTCTCAATCCCCAATGCTTGGCTTCCATAAGCAGATGGATAACCGC +ATCAAGCTCTTGGAAGAGATTCTGTCTTTTCGTATGCAGGGCGTTGAGTTCGATAATGGTGATATGTATG +TTGACGGCCATAAGGCTGCTTCTGACGTTCGTGATGAGTTTGTATCTGTTACTGAGAAGTTAATGGATGA +ATTGGCACAATGCTACAATGTGCTCCCCCAACTTGATATTAATAACACTATAGACCACCGCCCCGAAGGG +GACGAAAAATGGTTTTTAGAGAACGAGAAGACGGTTACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCC +CTCTTAAGGATATTCGCGATGAGTATAATTACCCCAAAAAGAAAGGTATTAAGGATGAGTGTTCAAGATT +GCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTACTATTCAGCGTTTGATGAATGCAATGCGACAG +GCTCATGCTGATGGTTGGTTTATCGTTTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTT +ATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCG +CAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGC +CGTCTTCATTTCCATGCGGTGCATTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTC +GTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT +CGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAG +CCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATA +TGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACT +TCCCAAGAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTG +TCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGC +AGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACC +TGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCA +
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/bwa_index.loc.sample Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,38 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory of BWA indexed sequences data files. You will need +#to create these data files and then create a bwa_index.loc file +#similar to this one (store it in this directory) that points to +#the directories in which those files are stored. The bwa_index.loc +#file has this format (longer white space characters are TAB characters): +# +#<unique_build_id> <dbkey> <display_name> <file_path> +# +#So, for example, if you had phiX indexed stored in +#/depot/data2/galaxy/phiX/base/, +#then the bwa_index.loc entry would look like this: +# +#phiX174 phiX phiX Pretty /depot/data2/galaxy/phiX/base/phiX.fa +# +#and your /depot/data2/galaxy/phiX/base/ directory +#would contain phiX.fa.* files: +# +#-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 phiX.fa.amb +#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 phiX.fa.ann +#-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 phiX.fa.bwt +#...etc... +# +#Your bwa_index.loc file should include an entry per line for each +#index set you have stored. The "file" in the path does not actually +#exist, but it is the prefix for the actual index files. For example: +# +#phiX174 phiX phiX174 /depot/data2/galaxy/phiX/base/phiX.fa +#hg18canon hg18 hg18 Canonical /depot/data2/galaxy/hg18/base/hg18canon.fa +#hg18full hg18 hg18 Full /depot/data2/galaxy/hg18/base/hg18full.fa +#/orig/path/hg19.fa hg19 hg19 /depot/data2/galaxy/hg19/base/hg19.fa +#...etc... +# +#Note that for backwards compatibility with workflows, the unique ID of +#an entry must be the path that was in the original loc file, because that +#is the value stored in the workflow for that parameter. That is why the +#hg19 entry above looks odd. New genomes can be better-looking. +#
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/bwa_index_color.loc.sample Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,38 @@ +#This is a sample file distributed with Galaxy that enables tools +#to use a directory of BWA indexed sequences data files. You will need +#to create these data files and then create a bwa_index_color.loc file +#similar to this one (store it in this directory) that points to +#the directories in which those files are stored. The bwa_index_color.loc +#file has this format (longer white space characters are TAB characters): +# +#<unique_build_id> <dbkey> <display_name> <file_path> +# +#So, for example, if you had phiX indexed stored in +#/depot/data2/galaxy/phiX/color/, +#then the bwa_index.loc entry would look like this: +# +#phiX174 phiX phiX Pretty /depot/data2/galaxy/phiX/color/phiX.fa +# +#and your /depot/data2/galaxy/phiX/color/ directory +#would contain phiX.fa.* files: +# +#-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 phiX.fa.amb +#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 phiX.fa.ann +#-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 phiX.fa.bwt +#...etc... +# +#Your bwa_index_color.loc file should include an entry per line for each +#index set you have stored. The "file" in the path does not actually +#exist, but it is the prefix for the actual index files. For example: +# +#phiX174 phiX phiX174 /depot/data2/galaxy/phiX/color/phiX.fa +#hg18canon hg18 hg18 Canonical /depot/data2/galaxy/hg18/color/hg18canon.fa +#hg18full hg18 hg18 Full /depot/data2/galaxy/hg18/color/hg18full.fa +#/orig/path/hg19.fa hg19 hg19 /depot/data2/galaxy/hg19/color/hg19.fa +#...etc... +# +#Note that for backwards compatibility with workflows, the unique ID of +#an entry must be the path that was in the original loc file, because that +#is the value stored in the workflow for that parameter. That is why the +#hg19 entry above looks odd. New genomes can be better-looking. +#
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_data_table_conf.xml.sample Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,13 @@ +<!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc--> +<tables> + <!-- Locations of indexes in the BWA mapper format --> + <table name="bwa_indexes" comment_char="#"> + <columns>value, dbkey, name, path</columns> + <file path="tool-data/bwa_index.loc" /> + </table> + <!-- Locations of indexes in the BWA color-space mapper format --> + <table name="bwa_indexes_color" comment_char="#"> + <columns>value, dbkey, name, path</columns> + <file path="tool-data/bwa_index_color.loc" /> + </table> +</tables> \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Sep 28 13:53:48 2012 -0400 @@ -0,0 +1,21 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="bwa" version="0.5.9"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://downloads.sourceforge.net/project/bio-bwa/bwa-0.5.9.tar.bz2</action> + <action type="shell_command">make</action> + <action type="move_file"> + <source>bwa</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> +Compiling BWA requires zlib and libpthread to be present on your system. + </readme> + </package> +</tool_dependency> \ No newline at end of file