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Imported from capsule None
author devteam
date Tue, 01 Apr 2014 10:51:01 -0400
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GenomeAnalysisEngine - Strictness is SILENT
CountCovariatesWalker - The covariates being used here:
CountCovariatesWalker - 	ReadGroupCovariate
CountCovariatesWalker - 	QualityScoreCovariate
CountCovariatesWalker - 	CycleCovariate
CountCovariatesWalker - 	DinucCovariate
CountCovariatesWalker - 	HomopolymerCovariate
CountCovariatesWalker - 	MinimumNQSCovariate
CountCovariatesWalker - 	PositionCovariate
TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING] 
CountCovariatesWalker - Writing raw recalibration data...
CountCovariatesWalker - ...done!
TraversalEngine - Total runtime