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annotate test-data/gatk/gatk_count_covariates/gatk_count_covariates_out_1.log.contains @ 0:14e304b70425 draft default tip

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Imported from capsule None
author devteam
date Tue, 01 Apr 2014 10:51:01 -0400
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1 GenomeAnalysisEngine - Strictness is SILENT
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2 CountCovariatesWalker - The covariates being used here:
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3 CountCovariatesWalker - ReadGroupCovariate
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4 CountCovariatesWalker - QualityScoreCovariate
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5 CountCovariatesWalker - CycleCovariate
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6 CountCovariatesWalker - DinucCovariate
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7 CountCovariatesWalker - HomopolymerCovariate
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8 CountCovariatesWalker - MinimumNQSCovariate
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9 CountCovariatesWalker - PositionCovariate
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10 TraversalEngine - [INITIALIZATION COMPLETE; TRAVERSAL STARTING]
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11 CountCovariatesWalker - Writing raw recalibration data...
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12 CountCovariatesWalker - ...done!
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13 TraversalEngine - Total runtime