Mercurial > repos > devteam > cuffcompare
diff test-data/cuffcompare_out7.txt @ 0:9d35cf35634e
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| author | devteam |
|---|---|
| date | Tue, 01 Oct 2013 12:49:41 -0400 |
| parents | |
| children | 8e534225baa9 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/cuffcompare_out7.txt Tue Oct 01 12:49:41 2013 -0400 @@ -0,0 +1,33 @@ +# Cuffcompare v2.0.2 | Command line was: +#cuffcompare -o cc_output -r /Users/jeremy/projects/galaxy-central/database/files/002/dataset_2770.dat -R ./input1 ./input2 +# + +#= Summary for dataset: ./input1 : +# Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) +# (0 multi-transcript loci, ~1.0 transcripts per locus) +# Reference mRNAs : 1 in 1 loci (1 multi-exon) +# Corresponding super-loci: 1 +#--------------------| Sn | Sp | fSn | fSp + Base level: 2.2 2.3 - - + Exon level: 0.0 0.0 0.0 0.0 + Intron level: 0.0 nan 0.0 nan +Intron chain level: 0.0 nan 0.0 nan + Transcript level: 0.0 0.0 0.0 0.0 + Locus level: 0.0 0.0 0.0 0.0 + +Matching intron chains: 0 + Matching loci: 0 + + Missed exons: 2/3 ( 66.7%) + Novel exons: 49/50 ( 98.0%) + Missed introns: 2/2 (100.0%) + Missed loci: 0/1 ( 0.0%) + Novel loci: 49/50 ( 98.0%) + +#= Summary for dataset: ./input2 : +# Query mRNAs : 50 in 50 loci (0 multi-exon transcripts) +# (0 multi-transcript loci, ~1.0 transcripts per locus) +# Reference mRNAs : 0 in 0 loci (0 multi-exon) + + Total union super-loci across all input datasets: 87 + (0 multi-transcript, ~1.1 transcripts per locus)