|
0
|
1 # Cuffcompare v2.0.2 | Command line was:
|
|
|
2 #cuffcompare -o cc_output -r /Users/jeremy/projects/galaxy-central/database/files/002/dataset_2770.dat -R ./input1 ./input2
|
|
|
3 #
|
|
|
4
|
|
|
5 #= Summary for dataset: ./input1 :
|
|
|
6 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts)
|
|
|
7 # (0 multi-transcript loci, ~1.0 transcripts per locus)
|
|
|
8 # Reference mRNAs : 1 in 1 loci (1 multi-exon)
|
|
|
9 # Corresponding super-loci: 1
|
|
|
10 #--------------------| Sn | Sp | fSn | fSp
|
|
|
11 Base level: 2.2 2.3 - -
|
|
|
12 Exon level: 0.0 0.0 0.0 0.0
|
|
|
13 Intron level: 0.0 nan 0.0 nan
|
|
|
14 Intron chain level: 0.0 nan 0.0 nan
|
|
|
15 Transcript level: 0.0 0.0 0.0 0.0
|
|
|
16 Locus level: 0.0 0.0 0.0 0.0
|
|
|
17
|
|
|
18 Matching intron chains: 0
|
|
|
19 Matching loci: 0
|
|
|
20
|
|
|
21 Missed exons: 2/3 ( 66.7%)
|
|
|
22 Novel exons: 49/50 ( 98.0%)
|
|
|
23 Missed introns: 2/2 (100.0%)
|
|
|
24 Missed loci: 0/1 ( 0.0%)
|
|
|
25 Novel loci: 49/50 ( 98.0%)
|
|
|
26
|
|
|
27 #= Summary for dataset: ./input2 :
|
|
|
28 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts)
|
|
|
29 # (0 multi-transcript loci, ~1.0 transcripts per locus)
|
|
|
30 # Reference mRNAs : 0 in 0 loci (0 multi-exon)
|
|
|
31
|
|
|
32 Total union super-loci across all input datasets: 87
|
|
|
33 (0 multi-transcript, ~1.1 transcripts per locus)
|
