Mercurial > repos > devteam > cufflinks

diff cufflinks_wrapper.xml @ 6:9aab29e159a7 draft

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Convert tool to use $GALAXY_SLOTS if available.
author Nate Coraor <nate@bx.psu.edu>
date Thu, 16 Jan 2014 13:14:05 -0500
parents da11bfc10e81
children 5346d5eea8b1
line wrap: on
line diff
--- a/cufflinks_wrapper.xml	Thu Jan 09 14:28:13 2014 -0500
+++ b/cufflinks_wrapper.xml	Thu Jan 16 13:14:05 2014 -0500
@@ -9,7 +9,7 @@
         cufflinks_wrapper.py 
             --input=$input
             --assembled-isoforms-output=$assembled_isoforms
-            --num-threads="4"
+            --num-threads="\${GALAXY_SLOTS:-4}"
             -I $max_intron_len
             -F $min_isoform_fraction
             -j $pre_mrna_fraction