Mercurial > repos > devteam > cuffmerge
comparison cuffmerge_wrapper.xml @ 13:cf747d1bd79a draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/cuffmerge commit 82ee6fc860c52c531b7a57bbb346ab1a67a434a5
| author | devteam |
|---|---|
| date | Sun, 19 Feb 2017 12:12:38 -0500 |
| parents | 1707a530e598 |
| children | 6a6717a5f421 |
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| 12:1707a530e598 | 13:cf747d1bd79a |
|---|---|
| 1 <tool id="cuffmerge" name="Cuffmerge" version="@VERSION@.0"> | 1 <tool id="cuffmerge" name="Cuffmerge" version="@VERSION@.1"> |
| 2 <description>merge together several Cufflinks assemblies</description> | 2 <description>merge together several Cufflinks assemblies</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>cuff_macros.xml</import> | 4 <import>cuff_macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 7 <expand macro="stdio" /> | 7 <version_command>cuffmerge -v</version_command> |
| 8 <command> | 8 <command detect_errors="aggressive"> |
| 9 python '$__tool_directory__/cuffmerge_wrapper.py' | 9 python '$__tool_directory__/cuffmerge_wrapper.py' |
| 10 --num-threads="\${GALAXY_SLOTS:-4}" | 10 --num-threads="\${GALAXY_SLOTS:-4}" |
| 11 | 11 |
| 12 ## Use annotation reference? | 12 ## Use annotation reference? |
| 13 #if $annotation.use_ref_annotation == "Yes": | 13 #if $annotation.use_ref_annotation == "Yes": |