Mercurial > repos > devteam > data_manager_build_kraken_database
changeset 5:0a9ff888a4e2 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken_database/ commit 02d5f5241444bf471d3f89a6e0aeb4d9f4075811"
| author | iuc |
|---|---|
| date | Tue, 18 Aug 2020 11:36:13 -0400 |
| parents | 6d7aef331be9 |
| children | 889a857303e0 |
| files | data_manager/kraken_database_builder.xml data_manager/make_json.py |
| diffstat | 2 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/kraken_database_builder.xml Tue Jul 17 12:12:15 2018 -0400 +++ b/data_manager/kraken_database_builder.xml Tue Aug 18 11:36:13 2020 -0400 @@ -1,8 +1,8 @@ <?xml version="1.0"?> -<tool id="kraken_database_builder" name="Kraken" tool_type="manage_data" version="1.1"> +<tool id="kraken_database_builder" name="Kraken" tool_type="manage_data" version="1.1.1"> <description>database builder</description> <requirements> - <requirement type="package" version="1.1">kraken</requirement> + <requirement type="package" version="1.1.1">kraken</requirement> </requirements> <version_command>kraken -version | awk '{print $NF}'</version_command> <command detect_errors="exit_code">
--- a/data_manager/make_json.py Tue Jul 17 12:12:15 2018 -0400 +++ b/data_manager/make_json.py Tue Aug 18 11:36:13 2020 -0400 @@ -16,7 +16,8 @@ output_path = os.path.join(os.getcwd(), 'kraken-database') for filename in os.listdir(output_path): shutil.move(os.path.join(output_path, filename), target_directory) - file(args.output, 'w').write(json.dumps(data_manager_json)) + with open(args.output, 'w') as out: + out.write(json.dumps(data_manager_json, sort_keys=True)) if __name__ == '__main__':