annotate data_manager_conf.xml @ 5:7124d2c14e4b draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
author iuc
date Sun, 16 Apr 2023 08:31:10 +0000
parents 00491eabe22b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
1 <?xml version="1.0"?>
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
2 <data_managers>
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
3
5
7124d2c14e4b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_picard_index_builder commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
iuc
parents: 0
diff changeset
4 <data_manager tool_file="data_manager/picard_index_builder.xml" id="picard_index_builder">
0
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
5 <data_table name="picard_indexes">
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
6 <output>
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
7 <column name="value" />
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
8 <column name="dbkey" />
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
9 <column name="name" />
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
10 <column name="path" output_ref="out_file" >
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
11 <move type="directory" relativize_symlinks="True">
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
12 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/picard_index/${value}</target>
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
14 </move>
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/picard_index/${value}/${path}</value_translation>
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
16 <value_translation type="function">abspath</value_translation>
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
17 </column>
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
18 </output>
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
19 </data_table>
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
20 </data_manager>
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
21
00491eabe22b planemo upload commit e4c87b7392ace0d6ac5ba2d926e1dd176f987985
devteam
parents:
diff changeset
22 </data_managers>