Mercurial > repos > devteam > data_manager_rsync_g2
comparison data_manager/data_manager_rsync.xml @ 0:0a3a6f862104 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_rsync_g2 commit 704060ebdf7399ecce9e0e8bd7262727fe750c27-dirty
author | devteam |
---|---|
date | Wed, 14 Oct 2015 13:48:12 -0400 |
parents | |
children | 8ff92bd7e2a3 |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:0a3a6f862104 |
---|---|
1 <tool id="data_manager_rsync_g2" name="Rsync with g2" version="0.0.1" tool_type="manage_data"> | |
2 <options sanitize="False" /> | |
3 <description>fetching</description> | |
4 <command interpreter="python">data_manager_rsync.py "${out_file}"</command> | |
5 <stdio> | |
6 <exit_code range="1:" err_level="fatal" /> | |
7 <exit_code range=":-1" err_level="fatal" /> | |
8 </stdio> | |
9 <inputs> | |
10 | |
11 <param name="dbkey" type="genomebuild" label="dbkey to search for Reference Data" help="Specify ? to show all"/> | |
12 | |
13 <param name="data_table_names" type="select" display="checkboxes" multiple="True" optional="True" | |
14 label="Choose Desired Data Tables" dynamic_options="galaxy_code_get_available_data_tables( __trans__ )" | |
15 refresh_on_change="dbkey"/> | |
16 | |
17 | |
18 <param name="data_table_entries" type="select" display="checkboxes" multiple="True" optional="False" | |
19 label="Choose Desired Data Tables Entries" dynamic_options="galaxy_code_get_available_data_tables_entries( __trans__, dbkey, data_table_names )" | |
20 refresh_on_change="dbkey"/> | |
21 </inputs> | |
22 <outputs> | |
23 <data name="out_file" format="data_manager_json" dbkey="dbkey"/> | |
24 </outputs> | |
25 <tests> | |
26 <test> | |
27 <param name="dbkey" value="sacCer2"/> | |
28 <param name="data_table_names" value="all_fasta"/> | |
29 <param name="data_table_entries" value="eyJlbnRyeSI6IHsicGF0aCI6ICIvZ2FsYXh5L2RhdGEvc2FjQ2VyMi9zZXEvc2FjQ2VyMi5mYSIs ICJkYmtleSI6ICJzYWNDZXIyIiwgInZhbHVlIjogInNhY0NlcjIiLCAibmFtZSI6ICJZZWFzdCAo U2FjY2hhcm9teWNlcyBjZXJldmlzaWFlKTogc2FjQ2VyMiJ9LCAibmFtZSI6ICJhbGxfZmFzdGEi fQ=="/> | |
30 <output name="out_file" file="sacCer2_rsync_all_fasta.data_manager_json"/> | |
31 </test> | |
32 </tests> | |
33 <help> | |
34 **What it does** | |
35 | |
36 This tool connects to the Galaxy Project's rsync reference data repository to download data and populate tool data tables. | |
37 | |
38 ------ | |
39 | |
40 | |
41 | |
42 .. class:: infomark | |
43 | |
44 **Notice:** If you do not have a particular data table defined, then it will be created and persisted dynamically. | |
45 | |
46 </help> | |
47 <code file="data_manager_rsync.py" /> | |
48 </tool> |