diff data_manager/data_manager_rsync.xml @ 0:0a3a6f862104 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_rsync_g2 commit 704060ebdf7399ecce9e0e8bd7262727fe750c27-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/data_manager_rsync.xml	Wed Oct 14 13:48:12 2015 -0400
@@ -0,0 +1,48 @@
+<tool id="data_manager_rsync_g2" name="Rsync with g2" version="0.0.1" tool_type="manage_data">
+    <options sanitize="False" />
+    <description>fetching</description>
+    <command interpreter="python">data_manager_rsync.py "${out_file}"</command>
+    <stdio>
+        <exit_code range="1:" err_level="fatal" />
+        <exit_code range=":-1" err_level="fatal" />
+    </stdio>
+    <inputs>
+        
+        <param name="dbkey" type="genomebuild" label="dbkey to search for Reference Data" help="Specify ? to show all"/>
+
+        <param name="data_table_names" type="select" display="checkboxes" multiple="True" optional="True" 
+        label="Choose Desired Data Tables" dynamic_options="galaxy_code_get_available_data_tables( __trans__ )"
+        refresh_on_change="dbkey"/>
+        
+        
+        <param name="data_table_entries" type="select" display="checkboxes" multiple="True" optional="False" 
+        label="Choose Desired Data Tables Entries" dynamic_options="galaxy_code_get_available_data_tables_entries( __trans__, dbkey, data_table_names )"
+        refresh_on_change="dbkey"/>
+    </inputs>
+    <outputs>
+        <data name="out_file" format="data_manager_json" dbkey="dbkey"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="dbkey" value="sacCer2"/>
+            <param name="data_table_names" value="all_fasta"/>
+            <param name="data_table_entries" value="eyJlbnRyeSI6IHsicGF0aCI6ICIvZ2FsYXh5L2RhdGEvc2FjQ2VyMi9zZXEvc2FjQ2VyMi5mYSIs ICJkYmtleSI6ICJzYWNDZXIyIiwgInZhbHVlIjogInNhY0NlcjIiLCAibmFtZSI6ICJZZWFzdCAo U2FjY2hhcm9teWNlcyBjZXJldmlzaWFlKTogc2FjQ2VyMiJ9LCAibmFtZSI6ICJhbGxfZmFzdGEi fQ=="/>
+            <output name="out_file" file="sacCer2_rsync_all_fasta.data_manager_json"/>
+        </test>
+    </tests>
+    <help>
+**What it does**
+
+This tool connects to the Galaxy Project's rsync reference data repository to download data and populate tool data tables.
+
+------
+
+
+
+.. class:: infomark
+
+**Notice:** If you do not have a particular data table defined, then it will be created and persisted dynamically. 
+
+    </help>
+    <code file="data_manager_rsync.py" />
+</tool>