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annotate test-data/emboss_water_out.fasta @ 5:2cf967772a40

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Fix for emboss_format_corrector.py. Datatypes should be changed before the job is run.
author Daniel Blankenberg <dan@bx.psu.edu>
date Fri, 11 Oct 2013 14:10:00 -0400
parents 7334f6d0ac17
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7334f6d0ac17 Uploaded emboss functional test input and output data files.
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1 >hg17
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2 GTTTGAAGTTGAGATGTGGGTACAATACCATAGCTTTATTC------CAGAGCAGGGTAT
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3 TTGTTTCCAAATGCCATGTTCCCAGCAGCTGCCCTTGACTGGGAATTGGGGTGTGATTTG
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4 GGCTTTT-----CCTTAAATCCTTGAGGAGCTGGAGGGGTGGGTGGCTCGCACTCCTGCT
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5 TTctggatctgaatcctgactctgtcatggacctgtttgactttgggcaagttgactcct
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6 attcctgagccccatatttttctcttctgtgaaattcagattaaaaAAACATGGCTTTGA
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7 TCAAA----CATTATAAATAATATATAGACAGACTGCTTGTTTTTATTGTATTGCCAGAA
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8 ATGAATCCTACTAATA-------------------TTGC-CATCTA-TGG--ACAGAAAA
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9 TGTATTACCTGTCTTCATCAAGACCCAGACGAGGAAGAACACGAAAAGCGGA--------
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10 ---GATTAATTTTACTGCC-------ATCTCCAGAA---CCGTCATCCTAATATTTACTT
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11 A-CA----TTTTATTATTATTTCAGGCTC-ATGCACATATACTTAG-----CATGGATCA
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12 T-TGGCCACAGACTCGCATACATTTAA-CTTTATTACCTTTTGCCTCATGTATCTCATTA
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13 AAATTTTGCTGCTTAATCAAGGATCTGCATATTATTTTAATTTTAGAATTCACAGTTCCA
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14 AGACTTTGAAAGTTTCAAGCGTTCTGGGTGaatgtgttatgctctctcccgcca--ccat
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15 gtctttataccccctgatttct---cagccactatggcaaccactttctactcttagta-
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16 gcccat----atttagtccaatccccagctcaggagacacttct
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17 >Sequence 561 BP; 135 A; 106 C; 98 G; 222 T; 0 other;
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18 gttcga----------tgcctaaaatacctt--cttttgtccctacacagaccacagt--
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19 ---tttcctaatggc---tttacacc----------gactagaaatt-------------
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20 --cttgtgcaagcactaa----ttga-aagc---------ggttggc-------------
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21 --ctaga--------------gtgt----taccggtttg--------------------t
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22 atagctgagcgc-------gtctctt---------------------------gccctga
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23 tcaaaggttcattttctctact---ttggaagac-----------gttgt-------gga
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24 a-gaatacaacaagtacgagtctctcccccctggtttgctgat-tactggatacag---t
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25 tgtaatacc---cttc-gcaacacc----------------------gcgtaactatcta
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26 tatgaattatttt----ccctttattatatgtagtaggttcgtctt--taatcttccttt
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27 agcaagtcttttactgt--tttcgacctcaatgttcatgttcttaggttgttttggataa
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28 tatgcggtcag-----------tttaatcttcgt--------------tgtttcttctta
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29 aaatat------ttattcatgg-------------tttaatttttggttt----gt----
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30 --actt--------------gttcaggg----------------------gccagttcat
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31 -tattta----ctctg-tttgtatacagc----------agttcttt-tatttttagtat
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32 g---attttaattta-------------------aaacaattct