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changeset 5:2cf967772a40

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Fix for emboss_format_corrector.py. Datatypes should be changed before the job is run.
author Daniel Blankenberg <dan@bx.psu.edu>
date Fri, 11 Oct 2013 14:10:00 -0400
parents c159a6ded912
children a6aa7f3cbe7d
files emboss_5/emboss_format_corrector.py
diffstat 1 files changed, 1 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/emboss_5/emboss_format_corrector.py	Wed Jun 19 12:22:14 2013 -0400
+++ b/emboss_5/emboss_format_corrector.py	Fri Oct 11 14:10:00 2013 -0400
@@ -1,12 +1,9 @@
 #EMBOSS format corrector
 
 import operator
-#from galaxy import datatypes
 
-#Properly set file formats after job run
-def exec_after_process( app, inp_data, out_data, param_dict,tool, stdout, stderr):
 #Properly set file formats before job run
-#def exec_before_job(trans, inp_data, out_data, param_dict,tool):
+def exec_before_job( app, inp_data=None, out_data=None, tool=None, param_dict=None ):
     #why isn't items an ordered list?
     items = out_data.items()
     #lets sort it ourselves....