annotate emboss_prettyseq.xml @ 12:832c20329690 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit ca9a6baaede679d619675e48d665748a91950115

<tool id="EMBOSS: prettyseq80" name="prettyseq" version="5.0.0.1">
  <description>Output sequence with translated ranges</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>prettyseq -sequence '$input1' -outfile '$out_file1' -ruler $ruler -plabel $plabel -nlabel $nlabel -width $width -auto</command>
  <inputs>
    <param name="input1" type="data" format="fasta" label="Sequence" />
    <param name="ruler" type="select" label="Add a ruler">
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="plabel" type="select" label="Number translations">
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="nlabel" type="select" label="Number DNA sequence">
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
    <param name="width" type="integer" value="60" min="10" label="Width of screen" />
  </inputs>
  <outputs>
    <data name="out_file1" format="prettyseq" />
  </outputs>
  <tests>
    <test>
      <param name="input1" value="2.fasta"/>
      <param name="ruler" value="yes"/>
      <param name="plabel" value="yes"/>
      <param name="nlabel" value="yes"/>
      <param name="width" value="60"/>
      <output name="out_file1" file="emboss_prettyseq_out.prettyseq"/>
    </test>
  </tests>
  <help>
.. class:: warningmark

The input dataset needs to be sequences.

-----

    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/prettyseq.html
  </help>
  <expand macro="citations" />
</tool>