Mercurial > repos > devteam > emboss_5
diff emboss_prettyseq.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
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date | Wed, 08 Feb 2017 12:42:22 -0500 |
parents | |
children | 8992d258e42f |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/emboss_prettyseq.xml Wed Feb 08 12:42:22 2017 -0500 @@ -0,0 +1,49 @@ +<tool id="EMBOSS: prettyseq80" name="prettyseq" version="5.0.0.1"> + <description>Output sequence with translated ranges</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <command>prettyseq -sequence '$input1' -outfile '$out_file1' -ruler $ruler -plabel $plabel -nlabel $nlabel -width $width -auto</command> + <inputs> + <param name="input1" type="data" format="fasta" label="Sequence" /> + <param name="ruler" type="select" label="Add a ruler"> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> + <param name="plabel" type="select" label="Number translations"> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> + <param name="nlabel" type="select" label="Number DNA sequence"> + <option value="yes">Yes</option> + <option value="no">No</option> + </param> + <param name="width" type="integer" value="60" min="10" label="Width of screen" /> + </inputs> + <outputs> + <data name="out_file1" format="prettyseq" /> + </outputs> + <tests> + <test> + <param name="input1" value="2.fasta"/> + <param name="ruler" value="yes"/> + <param name="plabel" value="yes"/> + <param name="nlabel" value="yes"/> + <param name="width" value="60"/> + <output name="out_file1" file="emboss_prettyseq_out.prettyseq"/> + </test> + </tests> + <help> +.. class:: warningmark + +The input dataset needs to be sequences. + +----- + + You can view the original documentation here_. + + .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/prettyseq.html + </help> + <expand macro="citations" /> +</tool>