Mercurial > repos > devteam > emboss_5
annotate emboss_5/emboss_iep.xml @ 8:b810c96613ee draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit a1517c9d22029095120643bbe2c8fa53754dd2b7
author | devteam |
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date | Wed, 11 Nov 2015 12:12:41 -0500 |
parents | b94ca591877b |
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rev | line source |
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0 | 1 <tool id="EMBOSS: iep45" name="iep" version="5.0.0"> |
2 <description>Calculates the isoelectric point of a protein</description> | |
3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> | |
4 <command>iep -sequence $input1 -outfile $out_file1 -step $step -amino $amino -graph png -termini $termini -auto</command> | |
5 <inputs> | |
6 <param format="data" name="input1" type="data"> | |
7 <label>Sequences</label> | |
8 </param> | |
8
b810c96613ee
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
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9 <param name="step" type="text" value=".5"> |
0 | 10 <label>Step value for pH</label> |
11 </param> | |
8
b810c96613ee
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit a1517c9d22029095120643bbe2c8fa53754dd2b7
devteam
parents:
0
diff
changeset
|
12 <param name="amino" type="text" value="1"> |
0 | 13 <label>Number of N-termini</label> |
14 </param> | |
15 <param name="termini" type="select"> | |
16 <label>Include charge at N and C terminus</label> | |
17 <option value="yes">Yes</option> | |
18 <option value="no">No</option> | |
19 </param> | |
20 </inputs> | |
21 <outputs> | |
22 <data format="iep" name="out_file1" /> | |
23 </outputs> | |
24 <tests> | |
25 <test> | |
26 <param name="input1" value="2.fasta"/> | |
27 <param name="step" value="0.5"/> | |
28 <param name="amino" value="1"/> | |
29 <param name="termini" value="yes"/> | |
30 <output name="out_file1" file="emboss_iep_out.iep"/> | |
31 </test> | |
32 </tests> | |
33 <help> | |
34 You can view the original documentation here_. | |
35 | |
36 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/iep.html | |
37 | |
38 ------ | |
39 | |
40 **Citation** | |
41 | |
42 For the underlying tool, please cite `Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000 Jun;16(6):276-7. <http://www.ncbi.nlm.nih.gov/pubmed/10827456>`_ | |
43 | |
44 If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. <http://www.ncbi.nlm.nih.gov/pubmed/17568012>`_ | |
45 </help> | |
46 </tool> |