annotate emboss_dotmatcher.xml @ 10:d49956b87f7e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1

<tool id="EMBOSS: dotmatcher24" name="dotmatcher" version="5.0.0.1">
  <description>Displays a thresholded dotplot of two sequences</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' dotmatcher -asequence '$input1' -bsequence '$input2' -goutfile '$out_file1' -windowsize $windowsize -threshold $threshold -graph png -xygraph png -auto</command>
  <inputs>
    <param name="input1" type="data" format="data" label="Sequence 1" />
    <param name="input2" type="data" format="data" label="Sequence 2" />
    <param name="windowsize" type="integer" value="10" label="Window size" />
    <param name="threshold" type="integer" value="23" label="Threshold" />
  </inputs>
  <outputs>
    <data name="out_file1" format="png" />
  </outputs>
  <!-- functional tests not possible since image output contains file name information and timestamp -->
  <help>
    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/dotmatcher.html
  </help>
  <expand macro="citations" />
</tool>