annotate emboss_dreg.xml @ 10:d49956b87f7e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1

<tool id="EMBOSS: dreg27" name="dreg" version="5.0.0">
  <description>Regular expression search of a nucleotide sequence</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>dreg -sequence '$input1' -outfile '$out_file1' -pattern '$pattern' -raccshow3 "no" -rusashow3 "no" -rdesshow3 "no" -auto</command>
  <inputs>
    <param name="input1" type="data" format="data" label="Sequence 1" />
    <param name="pattern" type="text" value="(AUG)" label="Regular expression pattern" />
  </inputs>
  <outputs>
    <data name="out_file1" format="dreg" />
  </outputs>
  <!-- tests not possible since dreg timestamps output file -->
  <help>
    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/dreg.html
  </help>
  <expand macro="citations" />
</tool>