annotate emboss_octanol.xml @ 10:d49956b87f7e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1

<tool id="EMBOSS: octanol63" name="octanol" version="5.0.0.1">
  <!-- graphics output with filename, no functional tests added -->
  <description>Displays protein hydropathy</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' octanol -sequence '$input1' -graph png -goutfile '$out_file1' -width $width -octanolplot $octanolplot -interfaceplot $interfaceplot
  -differenceplot $differenceplot -auto</command>
  <inputs>
    <param name="input1" type="data" format="data" label="Sequences" />
    <param name="width" type="integer" value="19" label="Window size" />
    <param name="octanolplot" type="select" label="Display the octanol plot">
      <option value="no">No</option>
      <option value="yes">Yes</option>
    </param>
    <param name="interfaceplot" type="select" label="Display the interface plot">
      <option value="no">No</option>
      <option value="yes">Yes</option>
    </param>
    <param name="differenceplot" type="select" label="Display the difference plot">
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
  </inputs>
  <outputs>
    <data name="out_file1" format="png" />
  </outputs>
  <help>
    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/octanol.html
  </help>
  <expand macro="citations" />
</tool>