annotate emboss_prettyseq.xml @ 18:63dd26468588 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 18de4aa9ba00124b1b3e3afe14219e46931e58a9"
author iuc
date Fri, 09 Jul 2021 18:36:34 +0000
parents 8992d258e42f
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8992d258e42f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 9844cae766e7471d9fa6b2e8356e5194e77f6753
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1 <tool id="EMBOSS: prettyseq80" name="prettyseq" version="@VERSION@.1">
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2 <description>Output sequence with translated ranges</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="requirements" />
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7 <command>prettyseq -sequence '$input1' -outfile '$out_file1' -ruler $ruler -plabel $plabel -nlabel $nlabel -width $width -auto</command>
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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8 <inputs>
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9 <param name="input1" type="data" format="fasta" label="Sequence" />
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10 <param name="ruler" type="select" label="Add a ruler">
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11 <option value="yes">Yes</option>
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12 <option value="no">No</option>
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13 </param>
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14 <param name="plabel" type="select" label="Number translations">
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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15 <option value="yes">Yes</option>
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16 <option value="no">No</option>
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17 </param>
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18 <param name="nlabel" type="select" label="Number DNA sequence">
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19 <option value="yes">Yes</option>
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20 <option value="no">No</option>
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21 </param>
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22 <param name="width" type="integer" value="60" min="10" label="Width of screen" />
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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23 </inputs>
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24 <outputs>
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25 <data name="out_file1" format="prettyseq" />
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26 </outputs>
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27 <tests>
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28 <test>
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29 <param name="input1" value="2.fasta"/>
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30 <param name="ruler" value="yes"/>
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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31 <param name="plabel" value="yes"/>
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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32 <param name="nlabel" value="yes"/>
d49956b87f7e planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
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33 <param name="width" value="60"/>
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34 <output name="out_file1" file="emboss_prettyseq_out.prettyseq"/>
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35 </test>
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36 </tests>
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37 <help>
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38 .. class:: warningmark
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39
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40 The input dataset needs to be sequences.
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41
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42 -----
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43
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44 You can view the original documentation here_.
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45
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46 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/prettyseq.html
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47 </help>
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48 <expand macro="citations" />
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49 </tool>