Mercurial > repos > devteam > emboss_5
comparison emboss_prettyseq.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
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date | Wed, 08 Feb 2017 12:42:22 -0500 |
parents | |
children | 8992d258e42f |
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9:511429456d3c | 10:d49956b87f7e |
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1 <tool id="EMBOSS: prettyseq80" name="prettyseq" version="5.0.0.1"> | |
2 <description>Output sequence with translated ranges</description> | |
3 <macros> | |
4 <import>macros.xml</import> | |
5 </macros> | |
6 <expand macro="requirements" /> | |
7 <command>prettyseq -sequence '$input1' -outfile '$out_file1' -ruler $ruler -plabel $plabel -nlabel $nlabel -width $width -auto</command> | |
8 <inputs> | |
9 <param name="input1" type="data" format="fasta" label="Sequence" /> | |
10 <param name="ruler" type="select" label="Add a ruler"> | |
11 <option value="yes">Yes</option> | |
12 <option value="no">No</option> | |
13 </param> | |
14 <param name="plabel" type="select" label="Number translations"> | |
15 <option value="yes">Yes</option> | |
16 <option value="no">No</option> | |
17 </param> | |
18 <param name="nlabel" type="select" label="Number DNA sequence"> | |
19 <option value="yes">Yes</option> | |
20 <option value="no">No</option> | |
21 </param> | |
22 <param name="width" type="integer" value="60" min="10" label="Width of screen" /> | |
23 </inputs> | |
24 <outputs> | |
25 <data name="out_file1" format="prettyseq" /> | |
26 </outputs> | |
27 <tests> | |
28 <test> | |
29 <param name="input1" value="2.fasta"/> | |
30 <param name="ruler" value="yes"/> | |
31 <param name="plabel" value="yes"/> | |
32 <param name="nlabel" value="yes"/> | |
33 <param name="width" value="60"/> | |
34 <output name="out_file1" file="emboss_prettyseq_out.prettyseq"/> | |
35 </test> | |
36 </tests> | |
37 <help> | |
38 .. class:: warningmark | |
39 | |
40 The input dataset needs to be sequences. | |
41 | |
42 ----- | |
43 | |
44 You can view the original documentation here_. | |
45 | |
46 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/prettyseq.html | |
47 </help> | |
48 <expand macro="citations" /> | |
49 </tool> |