Mercurial > repos > devteam > emboss_5
comparison emboss_wobble.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
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date | Wed, 08 Feb 2017 12:42:22 -0500 |
parents | |
children | 8992d258e42f |
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9:511429456d3c | 10:d49956b87f7e |
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1 <tool id="EMBOSS: wobble108" name="wobble" version="5.0.0.1"> | |
2 <description>Wobble base plot</description> | |
3 <macros> | |
4 <import>macros.xml</import> | |
5 </macros> | |
6 <expand macro="requirements" /> | |
7 <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' wobble -sequence '$input1' -graph png -goutfile '$ofile1' -outfile '$ofile2' -window $window -bases '$bases' -auto</command> | |
8 <inputs> | |
9 <param name="input1" type="data" format="fasta" label="Sequence" /> | |
10 <param name="window" type="integer" value="30" label="Window size, in codons" /> | |
11 <param name="bases" type="text" value="GC" label="Bases used" /> | |
12 </inputs> | |
13 <outputs> | |
14 <data name="ofile1" format="png" /> | |
15 <data name="ofile2" format="wobble" /> | |
16 </outputs> | |
17 <tests> | |
18 <test> | |
19 <param name="input1" value="2.fasta"/> | |
20 <param name="window" value="30"/> | |
21 <param name="bases" value="GC"/> | |
22 <output name="ofile2" file="emboss_wobble_out.wobble"/> | |
23 </test> | |
24 </tests> | |
25 <help> | |
26 .. class:: warningmark | |
27 | |
28 The input dataset needs to be sequences. | |
29 | |
30 ----- | |
31 | |
32 You can view the original documentation here_. | |
33 | |
34 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/wobble.html | |
35 </help> | |
36 <expand macro="citations" /> | |
37 </tool> |