Mercurial > repos > devteam > emboss_5
diff emboss_wobble.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
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date | Wed, 08 Feb 2017 12:42:22 -0500 |
parents | |
children | 8992d258e42f |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/emboss_wobble.xml Wed Feb 08 12:42:22 2017 -0500 @@ -0,0 +1,37 @@ +<tool id="EMBOSS: wobble108" name="wobble" version="5.0.0.1"> + <description>Wobble base plot</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' wobble -sequence '$input1' -graph png -goutfile '$ofile1' -outfile '$ofile2' -window $window -bases '$bases' -auto</command> + <inputs> + <param name="input1" type="data" format="fasta" label="Sequence" /> + <param name="window" type="integer" value="30" label="Window size, in codons" /> + <param name="bases" type="text" value="GC" label="Bases used" /> + </inputs> + <outputs> + <data name="ofile1" format="png" /> + <data name="ofile2" format="wobble" /> + </outputs> + <tests> + <test> + <param name="input1" value="2.fasta"/> + <param name="window" value="30"/> + <param name="bases" value="GC"/> + <output name="ofile2" file="emboss_wobble_out.wobble"/> + </test> + </tests> + <help> +.. class:: warningmark + +The input dataset needs to be sequences. + +----- + + You can view the original documentation here_. + + .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/wobble.html + </help> + <expand macro="citations" /> +</tool>