Mercurial > repos > devteam > emboss_5
diff emboss_dreg.xml @ 10:d49956b87f7e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1
author | iuc |
---|---|
date | Wed, 08 Feb 2017 12:42:22 -0500 |
parents | |
children | 8992d258e42f |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/emboss_dreg.xml Wed Feb 08 12:42:22 2017 -0500 @@ -0,0 +1,22 @@ +<tool id="EMBOSS: dreg27" name="dreg" version="5.0.0"> + <description>Regular expression search of a nucleotide sequence</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <command>dreg -sequence '$input1' -outfile '$out_file1' -pattern '$pattern' -raccshow3 "no" -rusashow3 "no" -rdesshow3 "no" -auto</command> + <inputs> + <param name="input1" type="data" format="data" label="Sequence 1" /> + <param name="pattern" type="text" value="(AUG)" label="Regular expression pattern" /> + </inputs> + <outputs> + <data name="out_file1" format="dreg" /> + </outputs> + <!-- tests not possible since dreg timestamps output file --> + <help> + You can view the original documentation here_. + + .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/dreg.html + </help> + <expand macro="citations" /> +</tool>