Mercurial > repos > devteam > emboss_5
view emboss_5/emboss_plotcon.xml @ 5:2cf967772a40
Fix for emboss_format_corrector.py. Datatypes should be changed before the job is run.
author | Daniel Blankenberg <dan@bx.psu.edu> |
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date | Fri, 11 Oct 2013 14:10:00 -0400 |
parents | b94ca591877b |
children | b810c96613ee |
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<tool id="EMBOSS: plotcon75" name="plotcon" version="5.0.0"> <!-- produces png file --> <description>Plot quality of conservation of a sequence alignment</description> <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> <command interpreter="perl">emboss_single_outputfile_wrapper.pl plotcon -sequences $input1 -graph png -goutfile $out_file1 -winsize $winsize -auto</command> <inputs> <param format="data" name="input1" type="data"> <label>Sequence</label> </param> <param name="winsize" size="10" type="text" value="4"> <label>Number of columns to average alignment quality over</label> </param> </inputs> <outputs> <data format="png" name="out_file1" /> </outputs> <help> You can view the original documentation here_. .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/plotcon.html ------ **Citation** For the underlying tool, please cite `Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000 Jun;16(6):276-7. <http://www.ncbi.nlm.nih.gov/pubmed/10827456>`_ If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. <http://www.ncbi.nlm.nih.gov/pubmed/17568012>`_ </help> </tool>