Mercurial > repos > devteam > emboss_5

view test-data/emboss_compseq_out.compseq @ 5:2cf967772a40

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Fix for emboss_format_corrector.py. Datatypes should be changed before the job is run.
author Daniel Blankenberg <dan@bx.psu.edu>
date Fri, 11 Oct 2013 14:10:00 -0400
parents 7334f6d0ac17
children
line wrap: on
line source

#
# Output from 'compseq'
#
# The Expected frequencies are calculated on the (false) assumption that every
# word has equal frequency.
#
# The input sequences are:
#	Sequence


Word size	2
Total count	560

#
# Word	Obs Count	Obs Frequency	Exp Frequency	Obs/Exp Frequency
#
AA	40		0.0714286	0.0625000	1.1428571
AC	27		0.0482143	0.0625000	0.7714286
AG	26		0.0464286	0.0625000	0.7428571
AT	41		0.0732143	0.0625000	1.1714286
CA	26		0.0464286	0.0625000	0.7428571
CC	24		0.0428571	0.0625000	0.6857143
CG	15		0.0267857	0.0625000	0.4285714
CT	41		0.0732143	0.0625000	1.1714286
GA	19		0.0339286	0.0625000	0.5428571
GC	17		0.0303571	0.0625000	0.4857143
GG	19		0.0339286	0.0625000	0.5428571
GT	43		0.0767857	0.0625000	1.2285714
TA	50		0.0892857	0.0625000	1.4285714
TC	38		0.0678571	0.0625000	1.0857143
TG	37		0.0660714	0.0625000	1.0571429
TT	97		0.1732143	0.0625000	2.7714286

Other	0		0.0000000	0.0000000	10000000000.0000000