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Fix for emboss_format_corrector.py. Datatypes should be changed before the job is run.
author Daniel Blankenberg <dan@bx.psu.edu>
date Fri, 11 Oct 2013 14:10:00 -0400
parents 7334f6d0ac17
children
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>hg17
CCCTAGAGCTTCTGAGCCCTCAACAG--------AGATGAACTGGACTCTCTGCAGCCCC
ACTCTAAATTC-----------CTAAGAGAGAAGTTGATTGACCCAATCAG-------GG
TCAGGAGAAGGAAGGGAGGAGGAAAGGGAG---------GAGAGAAGAGCCTCTTCGTCT
CTTGCCTACCAC--TGGCCAGGCAATTGTAG---------CCAAGGGGGCT-GGAGTGTA
AATGCAAACATAGCC----------ATCAAGGGTt---gtgtatgtgtgtgtgt------
----gtgtctgtgtgtgtgtatgtgtgtCTCTTGGGTAGGTTAGATCTCCC---------
---AGGAGGTCCCTAC--TAAACAGACTTAAGCCCGCAAAA---TTTTA--GCTCTCCAG
CCTCACACACTCCACCCCTCTAC-----CATA-------TTGAATCTTCCCAAACCAACT
ATG-GCT---TTCCCTAA-CTCCGGAGcttggcctggaa--------tgccctgcttccc
ct--ctttcccctgg---ggaacgcctgtccttcaggcctcagttca-----cacactgc
ctcccttgca-----aagctct
>Sequence 561 BP; 135 A; 106 C; 98 G; 222 T; 0 other;
ccctaca----caga-----ccacagttttcctaa-------tgg---ctttaca--ccg
actagaaattcttgtgcaagcactaattga-aag-cggttggccta--gagtgttaccgg
tttgta------------tagctgagcgcgtctcttgccctgatcaaaggttcattttct
ct--------actttgg--aagacgttgtggaagaatacaacaag-----tacgagtctc
tcccc--------cctggtttgctgattactggatacagt-----------tgtaatacc
cttcgcaacaccgcgtaactatctatat-------gaa--tta-ttttccctttattata
tgtagtaggttcgt-ctttaatcttcctttagc------aagtcttttactgttttcga-
cctca------------atgttcatgttcttaggttgttttggat------------aat
atgcggtcagtt---taatcttcgttgtttcttcttaaaatatttatt--catggtt---
-taatttt----tggtttgta---cttg---ttcaggggccagttcattatttactctg-
----tttgtatacagcagttct