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Fix for emboss_format_corrector.py. Datatypes should be changed before the job is run.
author Daniel Blankenberg <dan@bx.psu.edu>
date Fri, 11 Oct 2013 14:10:00 -0400
parents c159a6ded912
children a6aa7f3cbe7d
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="emboss" version="5.0.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/EMBOSS-5.0.0.tar.gz</action>
                <action type="shell_command">./configure --prefix=$INSTALL_DIR</action>
                <action type="shell_command">make</action>
                <action type="shell_command">make install</action>
            </actions>
            <actions>
                <action type="download_by_url">ftp://emboss.open-bio.org/pub/EMBOSS/old/5.0.0/PHYLIP-3.6b.tar.gz</action>
                <action type="shell_command">./configure --prefix=$INSTALL_DIR CFLAGS='-I$INSTALL_DIR/include'</action>
                <action type="shell_command">make</action>
                <action type="shell_command">make install</action>
            </actions>
        </install>
        <readme>
Compiling the Emboss binaries requires the X11 client libraries and header files.

These links provide information for building the Emboss package in most environments.

System requirements
http://emboss.sourceforge.net/download/#Requirements

Platform-dependent notes
http://emboss.sourceforge.net/download/#Platforms
        </readme>
    </package>
</tool_dependency>