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view emboss_iep.xml @ 12:832c20329690 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit ca9a6baaede679d619675e48d665748a91950115
author iuc
date Mon, 23 Apr 2018 13:05:09 -0400
parents d49956b87f7e
children 8992d258e42f
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<tool id="EMBOSS: iep45" name="iep" version="5.0.0.1">
  <description>Calculates the isoelectric point of a protein</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>iep -sequence '$input1' -outfile '$out_file1' -step $step -amino $amino -graph png -termini $termini -auto</command>
  <inputs>
    <param name="input1" type="data" format="data" label="Sequences" />
    <param name="step" type="float" value="0.5" label="Step value for pH" />
    <param name="amino" type="integer" value="1" label="Number of N-termini" />
    <param name="termini" type="select" label="Include charge at N and C terminus">
      <option value="yes">Yes</option>
      <option value="no">No</option>
    </param>
  </inputs>
  <outputs>
    <data name="out_file1" format="txt" />
  </outputs>
  <tests>
    <test>
      <param name="input1" value="2.fasta"/>
      <param name="step" value="0.5"/>
      <param name="amino" value="1"/>
      <param name="termini" value="yes"/>
      <output name="out_file1" file="emboss_iep_out.iep"/>
    </test>
  </tests>
  <help>
    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/iep.html
  </help>
  <expand macro="citations" />
</tool>