view emboss_plotorf.xml @ 10:d49956b87f7e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit 2bfbb5ae6b801e43355fdc3f964a5111fe3fe3a1

<tool id="EMBOSS: plotorf76" name="plotorf" version="5.0.0">
  <!-- produces png file output -->
  <description>Plot potential open reading frames</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command>perl '$__tool_directory__/emboss_single_outputfile_wrapper.pl' plotorf -sequence '$input1' -graph png -goutfile '$out_file1' -start '$start' -stop '$stop' -auto</command>
  <inputs>
    <param name="input1" type="data" format="fasta" label="Sequence" />
    <param name="start" type="text" value="ATG" label="Start codons" />
    <param name="stop" type="text" value="TAA" label="Stop codons" />
  </inputs>
  <outputs>
    <data name="out_file1" format="png" />
  </outputs>
  <!--  <tests>
    <test>
      <param name="input1" value="2.fasta"/>
      <param name="start" value="ATG"/>
      <param name="stop" value="TAA"/>
      <output name="out_file1" file="emboss_plotorf_out.png"/>
    </test>
  </tests> -->
  <help>
.. class:: warningmark

The input dataset needs to be sequences.

-----

    You can view the original documentation here_.

    .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/plotorf.html
  </help>
  <expand macro="citations" />
</tool>