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changeset 14:2e0fb4bc860e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit fed02ef07e0a45f0d5a89cdca364607ab8da6cf9
author iuc
date Mon, 28 Jan 2019 11:22:18 -0500
parents 8992d258e42f
children dc492eb6a4fc
files emboss_seqret.xml macros.xml
diffstat 2 files changed, 7 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/emboss_seqret.xml	Fri Jun 22 03:24:47 2018 -0400
+++ b/emboss_seqret.xml	Mon Jan 28 11:22:18 2019 -0500
@@ -4,6 +4,7 @@
     <import>macros.xml</import>
   </macros>
   <expand macro="requirements" />
+  <expand macro="stdio" />
   <code file="emboss_format_corrector.py" />
   <command>seqret -sequence '$input1' -outseq '$out_file1' -feature $feature -firstonly $firstonly -osformat2 $out_format1 -auto</command>
   <inputs>
--- a/macros.xml	Fri Jun 22 03:24:47 2018 -0400
+++ b/macros.xml	Mon Jan 28 11:22:18 2019 -0500
@@ -5,6 +5,12 @@
             <requirement type="package" version="@VERSION@">emboss</requirement>
         </requirements>
     </xml>
+    <xml name="stdio">
+        <stdio>
+            <regex level="fatal_oom" match="insufficient memory available" source="both" />
+            <exit_code range="1:" />
+        </stdio>
+    </xml>
     <xml name="citations">
         <citations>
             <citation type="doi">10.1016/S0168-9525(00)02024-2</citation>