Mercurial > repos > devteam > emboss_5
changeset 9:511429456d3c draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit 1dbddfa19e12087e6e9fc177a088cdbf7ab9b414
| author | devteam |
|---|---|
| date | Mon, 09 May 2016 09:54:14 -0400 |
| parents | b810c96613ee |
| children | d49956b87f7e |
| files | emboss_5/emboss_fuzzpro.xml |
| diffstat | 1 files changed, 18 insertions(+), 10 deletions(-) [+] |
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--- a/emboss_5/emboss_fuzzpro.xml Wed Nov 11 12:12:41 2015 -0500 +++ b/emboss_5/emboss_fuzzpro.xml Mon May 09 09:54:14 2016 -0400 @@ -7,6 +7,14 @@ <label>Sequences</label> </param> <param name="pattern" type="text" value=""> + <sanitizer> + <valid initial="string.printable"> + <remove value="'"/> + </valid> + <mapping initial="none"> + <add source="'" target=""/> + </mapping> + </sanitizer> <label>Search pattern</label> </param> <param name="mismatch" type="text" value="0"> @@ -36,17 +44,17 @@ <data format="fuzzpro" name="out_file1" /> </outputs> <code file="emboss_format_corrector.py" /> - <help> - You can view the original documentation here_. - + <help> + You can view the original documentation here_. + .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/fuzzpro.html ------ -**Citation** - -For the underlying tool, please cite `Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000 Jun;16(6):276-7. <http://www.ncbi.nlm.nih.gov/pubmed/10827456>`_ - -If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. <http://www.ncbi.nlm.nih.gov/pubmed/17568012>`_ - </help> -</tool> \ No newline at end of file +**Citation** + +For the underlying tool, please cite `Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000 Jun;16(6):276-7. <http://www.ncbi.nlm.nih.gov/pubmed/10827456>`_ + +If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. <http://www.ncbi.nlm.nih.gov/pubmed/17568012>`_ + </help> +</tool>