changeset 9:511429456d3c draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit 1dbddfa19e12087e6e9fc177a088cdbf7ab9b414
author devteam
date Mon, 09 May 2016 09:54:14 -0400
parents b810c96613ee
children d49956b87f7e
files emboss_5/emboss_fuzzpro.xml
diffstat 1 files changed, 18 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/emboss_5/emboss_fuzzpro.xml	Wed Nov 11 12:12:41 2015 -0500
+++ b/emboss_5/emboss_fuzzpro.xml	Mon May 09 09:54:14 2016 -0400
@@ -7,6 +7,14 @@
       <label>Sequences</label>
     </param>
     <param name="pattern" type="text" value="">
+      <sanitizer>
+        <valid initial="string.printable">
+         <remove value="&apos;"/>
+        </valid>
+        <mapping initial="none">
+          <add source="&apos;" target=""/>
+        </mapping>
+      </sanitizer>
       <label>Search pattern</label>
     </param>
     <param name="mismatch" type="text" value="0">
@@ -36,17 +44,17 @@
     <data format="fuzzpro" name="out_file1" />
   </outputs>
   <code file="emboss_format_corrector.py" />
-  <help>
-    You can view the original documentation here_.
-    
+  <help>
+    You can view the original documentation here_.
+    
     .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/fuzzpro.html
 
 ------
 
-**Citation**
-
-For the underlying tool, please cite `Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000 Jun;16(6):276-7. &lt;http://www.ncbi.nlm.nih.gov/pubmed/10827456&gt;`_
-
-If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. &lt;http://www.ncbi.nlm.nih.gov/pubmed/17568012&gt;`_
-  </help>
-</tool>
\ No newline at end of file
+**Citation**
+
+For the underlying tool, please cite `Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000 Jun;16(6):276-7. &lt;http://www.ncbi.nlm.nih.gov/pubmed/10827456&gt;`_
+
+If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. &lt;http://www.ncbi.nlm.nih.gov/pubmed/17568012&gt;`_
+  </help>
+</tool>