Mercurial > repos > devteam > fastq_trimmer_by_quality
changeset 1:04a609b0fdf6 draft
planemo upload commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
| author | devteam |
|---|---|
| date | Tue, 21 Jul 2015 14:20:53 -0400 |
| parents | 1cdcaf5fc1da |
| children | 25c24379693a |
| files | fastq_trimmer_by_quality.xml tool_dependencies.xml |
| diffstat | 2 files changed, 6 insertions(+), 5 deletions(-) [+] |
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--- a/fastq_trimmer_by_quality.xml Mon Jan 27 09:26:45 2014 -0500 +++ b/fastq_trimmer_by_quality.xml Tue Jul 21 14:20:53 2015 -0400 @@ -125,6 +125,8 @@ </test> </tests> <help> +**What it does** + This tool allows you to trim the ends of reads based upon the aggregate value of quality scores found within a sliding window; a sliding window of size 1 is equivalent to 'simple' trimming of the ends. The user specifies the aggregating action (min, max, sum, mean) to perform on the quality score values found within the sliding window to be used with the user defined comparison operation and comparison value. @@ -139,10 +141,9 @@ ------ -**Citation** - -If you use this tool, please cite `Blankenberg D, Gordon A, Von Kuster G, Coraor N, Taylor J, Nekrutenko A; Galaxy Team. Manipulation of FASTQ data with Galaxy. Bioinformatics. 2010 Jul 15;26(14):1783-5. <http://www.ncbi.nlm.nih.gov/pubmed/20562416>`_ - </help> + <citations> + <citation type="doi">10.1093/bioinformatics/btq281</citation> + </citations> </tool>
--- a/tool_dependencies.xml Mon Jan 27 09:26:45 2014 -0500 +++ b/tool_dependencies.xml Tue Jul 21 14:20:53 2015 -0400 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="galaxy_sequence_utils" version="1.0.0"> - <repository changeset_revision="0643676ad5f7" name="package_galaxy_utils_1_0" owner="devteam" prior_installation_required="False" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="0643676ad5f7" name="package_galaxy_utils_1_0" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>