Mercurial > repos > devteam > fastqc
comparison test-data/fastqc_data2.txt @ 7:3fdc1a74d866 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit 0a6b68fa8ae5c04f18c4a517fc73a819f765700b
| author | devteam |
|---|---|
| date | Mon, 11 Apr 2016 10:27:34 -0400 |
| parents | 8c650f7f76e9 |
| children | 2b0c9d9fc6ca |
comparison
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| 6:28d39af2dd06 | 7:3fdc1a74d866 |
|---|---|
| 1 ##FastQC 0.11.2 | 1 ##FastQC 0.11.4 |
| 2 >>Basic Statistics pass | 2 >>Basic Statistics pass |
| 3 #Measure Value | 3 #Measure Value |
| 4 Filename 1000gsample.fastq | 4 Filename 1000gsample.fastq |
| 5 File type Conventional base calls | 5 File type Conventional base calls |
| 6 Encoding Sanger / Illumina 1.9 | 6 Encoding Sanger / Illumina 1.9 |
| 63 50 20.9356 22.0 16.0 27.0 10.0 30.0 | 63 50 20.9356 22.0 16.0 27.0 10.0 30.0 |
| 64 51 20.6152 21.0 15.0 27.0 9.0 30.0 | 64 51 20.6152 21.0 15.0 27.0 9.0 30.0 |
| 65 52 20.6588 21.0 16.0 27.0 9.0 30.0 | 65 52 20.6588 21.0 16.0 27.0 9.0 30.0 |
| 66 53 19.5852 20.0 14.0 25.0 9.0 29.0 | 66 53 19.5852 20.0 14.0 25.0 9.0 29.0 |
| 67 54 19.9424 21.0 14.0 26.0 7.0 30.0 | 67 54 19.9424 21.0 14.0 26.0 7.0 30.0 |
| 68 >>END_MODULE | |
| 69 >>Per tile sequence quality pass | |
| 70 #Tile Base Mean | |
| 71 1 1 0.4542485249902164 | |
| 72 1 2 0.02493171505959424 | |
| 73 1 3 0.004493134032774293 | |
| 74 1 4 0.6119404948560927 | |
| 75 1 5 0.5283275008594686 | |
| 76 1 6 0.3741933003058371 | |
| 77 1 7 -0.2985554485298749 | |
| 78 1 8 0.6040181642739206 | |
| 79 1 9 0.43795745033596845 | |
| 80 1 10 0.05327706110314523 | |
| 81 1 11 0.8097461135057031 | |
| 82 1 12 0.9171964750225641 | |
| 83 1 13 1.0716973449965757 | |
| 84 1 14 0.562649938864773 | |
| 85 1 15 0.5112535943737946 | |
| 86 1 16 0.7098461441939676 | |
| 87 1 17 0.3989886413671577 | |
| 88 1 18 0.2351551176870892 | |
| 89 1 19 0.002716666680861124 | |
| 90 1 20 -0.5270840838615776 | |
| 91 1 21 0.08959510509382795 | |
| 92 1 22 -0.6322238602545553 | |
| 93 1 23 -0.8566085860715056 | |
| 94 1 24 -0.8167218970288026 | |
| 95 1 25 0.7728199138173544 | |
| 96 1 26 -0.26898877195552373 | |
| 97 1 27 -0.7734079986509634 | |
| 98 1 28 0.46313879073469266 | |
| 99 1 29 -1.0803714983510417 | |
| 100 1 30 -0.9107347156963463 | |
| 101 1 31 -1.1279249650605188 | |
| 102 1 32 0.03588141895047414 | |
| 103 1 33 -0.3276409211703317 | |
| 104 1 34 0.07833890179158587 | |
| 105 1 35 -0.8393131051954583 | |
| 106 1 36 -1.024889600311596 | |
| 107 1 37 -1.4177418858492992 | |
| 108 1 38 -1.912918888443187 | |
| 109 1 39 -1.880569234686881 | |
| 110 1 40 -0.9901560786471286 | |
| 111 1 41 -1.9499635516515283 | |
| 112 1 42 -2.3754765893384793 | |
| 113 1 43 -1.6682056704307335 | |
| 114 1 44 -2.2432919652101226 | |
| 115 1 45 -2.1214550638335794 | |
| 116 1 46 -1.6941624871292404 | |
| 117 1 47 -2.261740586778952 | |
| 118 1 48 -0.47246064535067234 | |
| 119 1 49 -1.345180096970381 | |
| 120 1 50 -1.3012642855865373 | |
| 121 1 51 -1.6748103331735038 | |
| 122 1 52 -1.4936238782530324 | |
| 123 1 53 -0.9900326328970834 | |
| 124 1 54 -0.9042724595665739 | |
| 125 2 1 0.27305194379363584 | |
| 126 2 2 -0.40803531790744074 | |
| 127 2 3 -1.054114924575284 | |
| 128 2 4 0.02463890755450393 | |
| 129 2 5 -1.0899875174555511 | |
| 130 2 6 -0.7630472369346997 | |
| 131 2 7 -1.2563088062832328 | |
| 132 2 8 0.09022085047660511 | |
| 133 2 9 -0.8821890698105506 | |
| 134 2 10 -1.0053309975049132 | |
| 135 2 11 -1.2879339841743942 | |
| 136 2 12 -2.149225991399902 | |
| 137 2 13 -1.2225639492647176 | |
| 138 2 14 -0.7472401710253394 | |
| 139 2 15 -0.9942409111207091 | |
| 140 2 16 -1.07061783627001 | |
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| 142 2 18 -1.0554431729112004 | |
| 143 2 19 -1.374084310120118 | |
| 144 2 20 -0.25260300938050406 | |
| 145 2 21 -0.7384879229891972 | |
| 146 2 22 -0.5973032253339206 | |
| 147 2 23 -1.926205655668575 | |
| 148 2 24 -1.8018256821325878 | |
| 149 2 25 -1.2574609164634758 | |
| 150 2 26 -2.588402691369442 | |
| 151 2 27 -1.909427534670499 | |
| 152 2 28 -2.213051685455781 | |
| 153 2 29 -3.343130961110507 | |
| 154 2 30 -3.447731052692685 | |
| 155 2 31 -3.261502498638052 | |
| 156 2 32 -2.596108813039759 | |
| 157 2 33 -2.173306366835778 | |
| 158 2 34 -2.968059144606464 | |
| 159 2 35 -3.110863776746129 | |
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| 506 9 4 -0.2769483940327966 | |
| 507 9 5 -1.8391938666619012 | |
| 508 9 6 0.16393689004942402 | |
| 509 9 7 0.004008654034226566 | |
| 510 9 8 -0.611366451110694 | |
| 511 9 9 -0.7996493872708683 | |
| 512 9 10 -0.9450135371874531 | |
| 513 9 11 1.1088914126510012 | |
| 514 9 12 1.7428375006635903 | |
| 515 9 13 0.1964836697829 | |
| 516 9 14 -1.0424782662634335 | |
| 517 9 15 0.3676638507840515 | |
| 518 9 16 -1.349982915635092 | |
| 519 9 17 0.45710829948681564 | |
| 520 9 18 -0.5443320618000911 | |
| 521 9 19 -0.16138589742170595 | |
| 522 9 20 0.4045398477623543 | |
| 523 9 21 -0.03690062140189809 | |
| 524 9 22 0.6566650286343325 | |
| 525 9 23 1.2801435506806307 | |
| 526 9 24 1.0140473337404288 | |
| 527 9 25 1.0155549565523962 | |
| 528 9 26 -0.4963391993059503 | |
| 529 9 27 -1.144348169591133 | |
| 530 9 28 -0.29241676482086376 | |
| 531 9 29 0.018773800794257056 | |
| 532 9 30 0.5935387885771561 | |
| 533 9 31 -0.04245487959043359 | |
| 534 9 32 1.076907059976115 | |
| 535 9 33 1.2108206172912048 | |
| 536 9 34 0.16209958555226933 | |
| 537 9 35 -0.3299113957937472 | |
| 538 9 36 0.6554522800302856 | |
| 539 9 37 0.16174529363787826 | |
| 540 9 38 -0.29240606793036505 | |
| 541 9 39 -0.46176581588346366 | |
| 542 9 40 -0.17477146326251614 | |
| 543 9 41 -0.3995362012241799 | |
| 544 9 42 0.40059178672989404 | |
| 545 9 43 -0.7929919952170579 | |
| 546 9 44 -0.9578218797400382 | |
| 547 9 45 0.6699979276194128 | |
| 548 9 46 0.124640931674179 | |
| 549 9 47 0.2408235157851486 | |
| 550 9 48 -0.37844355133357865 | |
| 551 9 49 0.3419993902091072 | |
| 552 9 50 -0.8756232599455132 | |
| 553 9 51 0.44826658990341883 | |
| 554 9 52 0.34398295935380574 | |
| 555 9 53 0.5347536918892395 | |
| 556 9 54 -1.9350416903358045 | |
| 557 10 1 1.0952741660158587 | |
| 558 10 2 1.4967265868544644 | |
| 559 10 3 1.317313646853286 | |
| 560 10 4 -0.3547261718105723 | |
| 561 10 5 -1.4614160888841212 | |
| 562 10 6 0.29727022338276043 | |
| 563 10 7 0.570675320700893 | |
| 564 10 8 0.7553002155559696 | |
| 565 10 9 -0.11076049838197832 | |
| 566 10 10 0.9660975739236584 | |
| 567 10 11 1.3200025237621134 | |
| 568 10 12 0.5761708339969225 | |
| 569 10 13 1.1742614475606779 | |
| 570 10 14 0.49085506706990145 | |
| 571 10 15 0.6676638507840522 | |
| 572 10 16 0.5944615288093544 | |
| 573 10 17 -0.2984472560687408 | |
| 574 10 18 -0.07766539513342252 | |
| 575 10 19 0.871947435911629 | |
| 576 10 20 0.6934287366512422 | |
| 577 10 21 -0.4924561769574538 | |
| 578 10 22 0.13444280641211037 | |
| 579 10 23 1.3356991062361878 | |
| 580 10 24 0.6140473337404266 | |
| 581 10 25 0.1933327343301734 | |
| 582 10 26 1.2592163562496026 | |
| 583 10 27 2.2112073859644212 | |
| 584 10 28 1.7964721240680284 | |
| 585 10 29 0.7632182452387006 | |
| 586 10 30 1.604649899688269 | |
| 587 10 31 1.8797673426317907 | |
| 588 10 32 0.47690705997611715 | |
| 589 10 33 -0.15584604937545876 | |
| 590 10 34 1.8398773633300465 | |
| 591 10 35 2.981199715317363 | |
| 592 10 36 0.8110078355858406 | |
| 593 10 37 1.8617452936378776 | |
| 594 10 38 1.7742605987363014 | |
| 595 10 39 3.2937897396720928 | |
| 596 10 40 3.2918952034041524 | |
| 597 10 41 1.3115749098869323 | |
| 598 10 42 2.911702897841007 | |
| 599 10 43 2.9292302270051636 | |
| 600 10 44 1.964400342482186 | |
| 601 10 45 0.5477757053971892 | |
| 602 10 46 1.9135298205630704 | |
| 603 10 47 1.2741568491184836 | |
| 604 10 48 2.799334226444202 | |
| 605 10 49 3.441999390209105 | |
| 606 10 50 4.391043406721156 | |
| 607 10 51 3.7815999232367545 | |
| 608 10 52 1.3217607371315836 | |
| 609 10 53 3.0125314696670173 | |
| 610 10 54 2.2316249763308633 | |
| 611 >>END_MODULE | 68 >>END_MODULE |
| 612 >>Per base sequence content fail | 69 >>Per base sequence content fail |
| 613 #Base G A T C | 70 #Base G A T C |
| 614 1 21.5 32.64 25.919999999999998 19.939999999999998 | 71 1 21.5 32.64 25.919999999999998 19.939999999999998 |
| 615 2 24.04 31.72 26.540000000000003 17.7 | 72 2 24.04 31.72 26.540000000000003 17.7 |
| 5809 TTAGTGAAGCTCTCAAACCACTGAAGATTTTTTTCTTTCAAACGTTTCGAACTC 1 0.02 No Hit | 5266 TTAGTGAAGCTCTCAAACCACTGAAGATTTTTTTCTTTCAAACGTTTCGAACTC 1 0.02 No Hit |
| 5810 GCAACCCACTCCAGGGCCTCCTCTCTCCTAGGAGCTGGGCAGACAACAGGACAC 1 0.02 No Hit | 5267 GCAACCCACTCCAGGGCCTCCTCTCTCCTAGGAGCTGGGCAGACAACAGGACAC 1 0.02 No Hit |
| 5811 TCTACTGCCTGCACTGCCTTTTCATCTAGCTCCAATTTATATTCTTGTAGTTTA 1 0.02 No Hit | 5268 TCTACTGCCTGCACTGCCTTTTCATCTAGCTCCAATTTATATTCTTGTAGTTTA 1 0.02 No Hit |
| 5812 >>END_MODULE | 5269 >>END_MODULE |
| 5813 >>Adapter Content pass | 5270 >>Adapter Content pass |
| 5814 #Position Illumina Universal Adapter Illumina Small RNA Adapter Nextera Transposase Sequence | 5271 #Position Illumina Universal Adapter Illumina Small RNA Adapter Nextera Transposase Sequence SOLID Small RNA Adapter |
| 5815 1 0.0 0.0 0.0 | 5272 1 0.0 0.0 0.0 0.0 |
| 5816 2 0.02 0.0 0.0 | 5273 2 0.02 0.0 0.0 0.0 |
| 5817 3 0.02 0.0 0.0 | 5274 3 0.02 0.0 0.0 0.0 |
| 5818 4 0.02 0.0 0.0 | 5275 4 0.02 0.0 0.0 0.0 |
| 5819 5 0.02 0.0 0.0 | 5276 5 0.02 0.0 0.0 0.0 |
| 5820 6 0.02 0.0 0.0 | 5277 6 0.02 0.0 0.0 0.0 |
| 5821 7 0.02 0.0 0.0 | 5278 7 0.02 0.0 0.0 0.0 |
| 5822 8 0.02 0.0 0.0 | 5279 8 0.02 0.0 0.0 0.0 |
| 5823 9 0.02 0.0 0.0 | 5280 9 0.02 0.0 0.0 0.0 |
| 5824 10 0.02 0.0 0.0 | 5281 10 0.02 0.0 0.0 0.0 |
| 5825 11 0.02 0.0 0.0 | 5282 11 0.02 0.0 0.0 0.0 |
| 5826 12 0.02 0.0 0.0 | 5283 12 0.02 0.0 0.0 0.0 |
| 5827 13 0.02 0.0 0.0 | 5284 13 0.02 0.0 0.0 0.0 |
| 5828 14 0.02 0.0 0.0 | 5285 14 0.02 0.0 0.0 0.0 |
| 5829 15 0.02 0.0 0.0 | 5286 15 0.02 0.0 0.0 0.0 |
| 5830 16 0.02 0.0 0.0 | 5287 16 0.02 0.0 0.0 0.0 |
| 5831 17 0.02 0.0 0.0 | 5288 17 0.02 0.0 0.0 0.0 |
| 5832 18 0.02 0.0 0.0 | 5289 18 0.02 0.0 0.0 0.0 |
| 5833 19 0.06 0.0 0.0 | 5290 19 0.06 0.0 0.0 0.0 |
| 5834 20 0.36 0.0 0.0 | 5291 20 0.36 0.0 0.0 0.0 |
| 5835 21 0.36 0.0 0.0 | 5292 21 0.36 0.0 0.0 0.0 |
| 5836 22 0.36 0.0 0.0 | 5293 22 0.36 0.0 0.0 0.0 |
| 5837 23 0.36 0.0 0.0 | 5294 23 0.36 0.0 0.0 0.0 |
| 5838 24 0.36 0.0 0.0 | 5295 24 0.36 0.0 0.0 0.0 |
| 5839 25 0.4 0.0 0.0 | 5296 25 0.4 0.0 0.0 0.0 |
| 5840 26 0.4 0.0 0.0 | 5297 26 0.4 0.0 0.0 0.0 |
| 5841 27 0.42 0.0 0.0 | 5298 27 0.42 0.0 0.0 0.0 |
| 5842 28 0.62 0.0 0.0 | 5299 28 0.62 0.0 0.0 0.0 |
| 5843 29 0.66 0.0 0.0 | 5300 29 0.66 0.0 0.0 0.0 |
| 5844 30 0.68 0.0 0.0 | 5301 30 0.68 0.0 0.0 0.0 |
| 5845 31 0.68 0.0 0.0 | 5302 31 0.68 0.0 0.0 0.0 |
| 5846 32 0.68 0.0 0.0 | 5303 32 0.68 0.0 0.0 0.0 |
| 5847 33 0.68 0.0 0.0 | 5304 33 0.68 0.0 0.0 0.0 |
| 5848 34 0.7 0.0 0.0 | 5305 34 0.7 0.0 0.0 0.0 |
| 5849 35 0.76 0.0 0.0 | 5306 35 0.76 0.0 0.0 0.0 |
| 5850 36 0.8 0.0 0.0 | 5307 36 0.8 0.0 0.0 0.0 |
| 5851 37 0.88 0.0 0.0 | 5308 37 0.88 0.0 0.0 0.0 |
| 5852 38 1.0 0.0 0.0 | 5309 38 1.0 0.0 0.0 0.0 |
| 5853 39 1.12 0.0 0.0 | 5310 39 1.12 0.0 0.0 0.0 |
| 5854 40 1.22 0.0 0.0 | 5311 40 1.22 0.0 0.0 0.0 |
| 5855 41 1.38 0.0 0.0 | 5312 41 1.38 0.0 0.0 0.0 |
| 5856 42 1.48 0.0 0.0 | 5313 42 1.48 0.0 0.0 0.0 |
| 5857 >>END_MODULE | 5314 >>END_MODULE |
| 5858 >>Kmer Content pass | 5315 >>Kmer Content pass |
| 5859 >>END_MODULE | 5316 >>END_MODULE |