diff test-data/fastqc_data2.txt @ 7:3fdc1a74d866 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/fastqc commit 0a6b68fa8ae5c04f18c4a517fc73a819f765700b
author devteam
date Mon, 11 Apr 2016 10:27:34 -0400
parents 8c650f7f76e9
children 2b0c9d9fc6ca
line wrap: on
line diff
--- a/test-data/fastqc_data2.txt	Mon Jan 18 09:33:58 2016 -0500
+++ b/test-data/fastqc_data2.txt	Mon Apr 11 10:27:34 2016 -0400
@@ -1,4 +1,4 @@
-##FastQC	0.11.2
+##FastQC	0.11.4
 >>Basic Statistics	pass
 #Measure	Value
 Filename	1000gsample.fastq
@@ -66,549 +66,6 @@
 53	19.5852	20.0	14.0	25.0	9.0	29.0
 54	19.9424	21.0	14.0	26.0	7.0	30.0
 >>END_MODULE
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-9	48	-0.37844355133357865
-9	49	0.3419993902091072
-9	50	-0.8756232599455132
-9	51	0.44826658990341883
-9	52	0.34398295935380574
-9	53	0.5347536918892395
-9	54	-1.9350416903358045
-10	1	1.0952741660158587
-10	2	1.4967265868544644
-10	3	1.317313646853286
-10	4	-0.3547261718105723
-10	5	-1.4614160888841212
-10	6	0.29727022338276043
-10	7	0.570675320700893
-10	8	0.7553002155559696
-10	9	-0.11076049838197832
-10	10	0.9660975739236584
-10	11	1.3200025237621134
-10	12	0.5761708339969225
-10	13	1.1742614475606779
-10	14	0.49085506706990145
-10	15	0.6676638507840522
-10	16	0.5944615288093544
-10	17	-0.2984472560687408
-10	18	-0.07766539513342252
-10	19	0.871947435911629
-10	20	0.6934287366512422
-10	21	-0.4924561769574538
-10	22	0.13444280641211037
-10	23	1.3356991062361878
-10	24	0.6140473337404266
-10	25	0.1933327343301734
-10	26	1.2592163562496026
-10	27	2.2112073859644212
-10	28	1.7964721240680284
-10	29	0.7632182452387006
-10	30	1.604649899688269
-10	31	1.8797673426317907
-10	32	0.47690705997611715
-10	33	-0.15584604937545876
-10	34	1.8398773633300465
-10	35	2.981199715317363
-10	36	0.8110078355858406
-10	37	1.8617452936378776
-10	38	1.7742605987363014
-10	39	3.2937897396720928
-10	40	3.2918952034041524
-10	41	1.3115749098869323
-10	42	2.911702897841007
-10	43	2.9292302270051636
-10	44	1.964400342482186
-10	45	0.5477757053971892
-10	46	1.9135298205630704
-10	47	1.2741568491184836
-10	48	2.799334226444202
-10	49	3.441999390209105
-10	50	4.391043406721156
-10	51	3.7815999232367545
-10	52	1.3217607371315836
-10	53	3.0125314696670173
-10	54	2.2316249763308633
->>END_MODULE
 >>Per base sequence content	fail
 #Base	G	A	T	C
 1	21.5	32.64	25.919999999999998	19.939999999999998
@@ -5811,49 +5268,49 @@
 TCTACTGCCTGCACTGCCTTTTCATCTAGCTCCAATTTATATTCTTGTAGTTTA	1	0.02	No Hit
 >>END_MODULE
 >>Adapter Content	pass
-#Position	Illumina Universal Adapter	Illumina Small RNA Adapter	Nextera Transposase Sequence
-1	0.0	0.0	0.0
-2	0.02	0.0	0.0
-3	0.02	0.0	0.0
-4	0.02	0.0	0.0
-5	0.02	0.0	0.0
-6	0.02	0.0	0.0
-7	0.02	0.0	0.0
-8	0.02	0.0	0.0
-9	0.02	0.0	0.0
-10	0.02	0.0	0.0
-11	0.02	0.0	0.0
-12	0.02	0.0	0.0
-13	0.02	0.0	0.0
-14	0.02	0.0	0.0
-15	0.02	0.0	0.0
-16	0.02	0.0	0.0
-17	0.02	0.0	0.0
-18	0.02	0.0	0.0
-19	0.06	0.0	0.0
-20	0.36	0.0	0.0
-21	0.36	0.0	0.0
-22	0.36	0.0	0.0
-23	0.36	0.0	0.0
-24	0.36	0.0	0.0
-25	0.4	0.0	0.0
-26	0.4	0.0	0.0
-27	0.42	0.0	0.0
-28	0.62	0.0	0.0
-29	0.66	0.0	0.0
-30	0.68	0.0	0.0
-31	0.68	0.0	0.0
-32	0.68	0.0	0.0
-33	0.68	0.0	0.0
-34	0.7	0.0	0.0
-35	0.76	0.0	0.0
-36	0.8	0.0	0.0
-37	0.88	0.0	0.0
-38	1.0	0.0	0.0
-39	1.12	0.0	0.0
-40	1.22	0.0	0.0
-41	1.38	0.0	0.0
-42	1.48	0.0	0.0
+#Position	Illumina Universal Adapter	Illumina Small RNA Adapter	Nextera Transposase Sequence	SOLID Small RNA Adapter
+1	0.0	0.0	0.0	0.0
+2	0.02	0.0	0.0	0.0
+3	0.02	0.0	0.0	0.0
+4	0.02	0.0	0.0	0.0
+5	0.02	0.0	0.0	0.0
+6	0.02	0.0	0.0	0.0
+7	0.02	0.0	0.0	0.0
+8	0.02	0.0	0.0	0.0
+9	0.02	0.0	0.0	0.0
+10	0.02	0.0	0.0	0.0
+11	0.02	0.0	0.0	0.0
+12	0.02	0.0	0.0	0.0
+13	0.02	0.0	0.0	0.0
+14	0.02	0.0	0.0	0.0
+15	0.02	0.0	0.0	0.0
+16	0.02	0.0	0.0	0.0
+17	0.02	0.0	0.0	0.0
+18	0.02	0.0	0.0	0.0
+19	0.06	0.0	0.0	0.0
+20	0.36	0.0	0.0	0.0
+21	0.36	0.0	0.0	0.0
+22	0.36	0.0	0.0	0.0
+23	0.36	0.0	0.0	0.0
+24	0.36	0.0	0.0	0.0
+25	0.4	0.0	0.0	0.0
+26	0.4	0.0	0.0	0.0
+27	0.42	0.0	0.0	0.0
+28	0.62	0.0	0.0	0.0
+29	0.66	0.0	0.0	0.0
+30	0.68	0.0	0.0	0.0
+31	0.68	0.0	0.0	0.0
+32	0.68	0.0	0.0	0.0
+33	0.68	0.0	0.0	0.0
+34	0.7	0.0	0.0	0.0
+35	0.76	0.0	0.0	0.0
+36	0.8	0.0	0.0	0.0
+37	0.88	0.0	0.0	0.0
+38	1.0	0.0	0.0	0.0
+39	1.12	0.0	0.0	0.0
+40	1.22	0.0	0.0	0.0
+41	1.38	0.0	0.0	0.0
+42	1.48	0.0	0.0	0.0
 >>END_MODULE
 >>Kmer Content	pass
 >>END_MODULE