Mercurial > repos > devteam > fastqc

changeset 21:e7b2202befea draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/fastqc commit 8c357db3dc0861b61f04c7d9f70c5e170e70daa4
author iuc
date Fri, 24 May 2019 13:14:52 -0400
parents ddf5c37952ac
children 3d0c7bdf12f5
files rgFastQC.xml
diffstat 1 files changed, 8 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/rgFastQC.xml	Thu May 16 07:45:56 2019 -0400
+++ b/rgFastQC.xml	Fri May 24 13:14:52 2019 -0400
@@ -85,32 +85,32 @@
     <tests>
         <test>
             <param name="input_file" value="1000trimmed.fastq" />
-            <output name="html_file" file="fastqc_report.html" ftype="html" lines_diff="100"/>
+            <output name="html_file" file="fastqc_report.html" ftype="html" lines_diff="2"/>
             <output name="text_file" file="fastqc_data.txt" ftype="txt"/>
         </test>
         <test>
             <param name="input_file" value="1000trimmed.fastq" />
             <param name="contaminants" value="fastqc_contaminants.txt" ftype="tabular" />
-            <output name="html_file" file="fastqc_report_contaminants.html" ftype="html" lines_diff="100"/>
+            <output name="html_file" file="fastqc_report_contaminants.html" ftype="html" lines_diff="2"/>
             <output name="text_file" file="fastqc_data_contaminants.txt" ftype="txt"/>
         </test>
         <test>
             <param name="input_file" value="1000trimmed.fastq" />
             <param name="adapters" value="fastqc_adapters.txt" ftype="tabular" />
-            <output name="html_file" file="fastqc_report_adapters.html" ftype="html" lines_diff="100"/>
+            <output name="html_file" file="fastqc_report_adapters.html" ftype="html" lines_diff="2"/>
             <output name="text_file" file="fastqc_data_adapters.txt" ftype="txt"/>
         </test>
         <test>
             <param name="input_file" value="1000trimmed.fastq" />
             <param name="limits" value="fastqc_customlimits.txt" ftype="txt" />
-            <output name="html_file" file="fastqc_report_customlimits.html" ftype="html" lines_diff="100"/>
+            <output name="html_file" file="fastqc_report_customlimits.html" ftype="html" lines_diff="2"/>
             <output name="text_file" file="fastqc_data_customlimits.txt" ftype="txt"/>
         </test>
         <test>
             <param name="input_file" value="1000trimmed.fastq" ftype="fastq" />
             <param name="kmers" value="3" />
             <param name="limits" value="fastqc_customlimits.txt" ftype="txt" />
-            <output name="html_file" file="fastqc_report_kmer.html" ftype="html" lines_diff="100"/>
+            <output name="html_file" file="fastqc_report_kmer.html" ftype="html" lines_diff="2"/>
             <output name="text_file" file="fastqc_data_kmer.txt" ftype="txt"/>
             <assert_command>
                 <has_text text="--kmers 3"/>
@@ -119,13 +119,13 @@
         <test>
             <param name="input_file" value="1000trimmed.fastq" />
             <param name="min_length" value="108" />
-            <output name="html_file" file="fastqc_report_min_length.html" ftype="html" lines_diff="100"/>
+            <output name="html_file" file="fastqc_report_min_length.html" ftype="html" lines_diff="2"/>
             <output name="text_file" file="fastqc_data_min_length.txt" ftype="txt"/>
         </test>
         <test>
             <param name="input_file" value="1000trimmed.fastq" ftype="fastq" />
             <param name="nogroup" value="--nogroup" />
-            <output name="html_file" file="fastqc_report_nogroup.html" ftype="html" lines_diff="100"/>
+            <output name="html_file" file="fastqc_report_nogroup.html" ftype="html" lines_diff="2"/>
             <output name="text_file" file="fastqc_data_nogroup.txt" ftype="txt"/>
             <assert_command>
                 <has_text text="--nogroup"/>
@@ -133,7 +133,7 @@
         </test>
         <test>
             <param name="input_file" value="hisat_output_1.bam" ftype="bam" />
-            <output name="html_file" file="fastqc_report_hisat.html" ftype="html" lines_diff="100"/>
+            <output name="html_file" file="fastqc_report_hisat.html" ftype="html" lines_diff="2"/>
             <output name="text_file" file="fastqc_data_hisat.txt" ftype="txt"/>
         </test>
     </tests>