comparison fastx_barcode_splitter_galaxy_wrapper.sh @ 3:8abdedf55101 draft

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/fastx_toolkit/fastx_barcode_splitter commit a1517c9d22029095120643bbe2c8fa53754dd2b7

2:c46a5807f2b6

BASEPATH="$OUTPUT_PATH/"
#PREFIX="$BASEPATH"`date "+%Y-%m-%d_%H%M__"`"${LIBNAME}__"
PREFIX="$BASEPATH""${LIBNAME}__"
SUFFIX=".txt"

RESULTS=`zcat -f "$FASTQ_FILE" | fastx_barcode_splitter.pl --bcfile "$BARCODE_FILE" --prefix "$PREFIX" --suffix "$SUFFIX" "$@"`
if [ $? != 0 ]; then
	echo "error"
fi

#

3:8abdedf55101

BASEPATH="$OUTPUT_PATH/"
#PREFIX="$BASEPATH"`date "+%Y-%m-%d_%H%M__"`"${LIBNAME}__"
PREFIX="$BASEPATH""${LIBNAME}__"
SUFFIX=".txt"

RESULTS=`zcat -f < "$FASTQ_FILE" | fastx_barcode_splitter.pl --bcfile "$BARCODE_FILE" --prefix "$PREFIX" --suffix "$SUFFIX" "$@"`
if [ $? != 0 ]; then
	echo "error"
fi

#