annotate test-data/kraken-translate/test_database.loc @ 4:9a5be5b1a5c9 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
author iuc
date Wed, 04 Dec 2019 06:51:08 -0500
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
1 # Tab separated with three columns:
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
2 # - value (Galaxy records this in the Galaxy DB)
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
3 # - name (Galaxy shows this in the UI)
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
4 # - path (folder name containing the Kraken DB)
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
5 #
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
6 # Modern usage assumes $path is the folder containing
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
7 # the Kraken database of interest:
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
8 #
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
9 new_style_test_entry "Test Database" ${__HERE__}/test_db
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
10
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
11 # The kraken wrapper still supports an alternative
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
12 # legacy usage where $path/$name is the folder
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
13 # containing the Kraken database of interest, meaning
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
14 # $name must be both a folder name and human readable
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
15 # description of the DB to show in the Galaxy UI:
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
16 old_style_test_entry test_db ${__HERE__}
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
17
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
18 # NOTE: This legacy style should be avoided as other
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
19 # tools also using the kraken_database.loc file may
9a5be5b1a5c9 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff changeset
20 # not understand it!