Mercurial > repos > devteam > kraken_translate
annotate macros.xml @ 3:9bdcba262627 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_translate/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
author | iuc |
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date | Mon, 07 Aug 2017 17:29:45 -0400 |
parents | b9971bca4b01 |
children | 9a5be5b1a5c9 |
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77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
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1 <?xml version="1.0"?> |
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
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2 <macros> |
3
9bdcba262627
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_translate/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
iuc
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3 <token name="@WRAPPER_VERSION@">1.2.3</token> |
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77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
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4 <xml name="requirements"> |
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
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5 <requirements> |
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475284b74179
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 3abfc7eb2999fa588862b84c453012c811fa8350
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6 <requirement type="package" version="0.10.6_eaf8fb68">kraken</requirement> |
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77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
parents:
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7 </requirements> |
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
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8 </xml> |
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
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9 <xml name="version_command"> |
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9bdcba262627
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_translate/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
iuc
parents:
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10 <version_command><![CDATA[ |
9bdcba262627
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_translate/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
iuc
parents:
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11 export LC_ALL=C && kraken --version |
9bdcba262627
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_translate/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
iuc
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12 ]]></version_command> |
0
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
parents:
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changeset
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13 </xml> |
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
parents:
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changeset
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14 <xml name="input_database"> |
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
parents:
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15 <param label="Select a Kraken database" name="kraken_database" type="select"> |
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
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16 <options from_data_table="kraken_databases"> |
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9bdcba262627
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_translate/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
iuc
parents:
2
diff
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17 <validator message="No Kraken database is available" type="no_options" /> |
0
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
parents:
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18 </options> |
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
parents:
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19 </param> |
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
parents:
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20 </xml> |
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
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21 <xml name="citations"> |
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
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22 <citations> |
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
parents:
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23 <citation type="doi">10.1186/gb-2014-15-3-r46</citation> |
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
parents:
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changeset
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24 </citations> |
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
parents:
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changeset
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25 </xml> |
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
parents:
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26 <token name="@INPUT_DATABASE@">--db ${kraken_database.fields.name}</token> |
77ca66b1f5e9
planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_translate/ commit 00a7926c285bc4a339bd7deebf40b28f39c7d947-dirty
devteam
parents:
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27 <token name="@SET_DATABASE_PATH@">export KRAKEN_DB_PATH="${kraken_database.fields.path}"</token> |
3
9bdcba262627
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_translate/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
iuc
parents:
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diff
changeset
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28 </macros> |