Mercurial > repos > devteam > kraken_translate
annotate test-data/kraken-translate/test_database.loc @ 5:bc3e90fd13be draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 3873b52450c86190e4fb8767cffe5730d6e37692"
| author | iuc |
|---|---|
| date | Sat, 27 Nov 2021 10:13:02 +0000 |
| parents | 9a5be5b1a5c9 |
| children |
| rev | line source |
|---|---|
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4
9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
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changeset
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1 # Tab separated with three columns: |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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2 # - value (Galaxy records this in the Galaxy DB) |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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3 # - name (Galaxy shows this in the UI) |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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4 # - path (folder name containing the Kraken DB) |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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5 # |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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6 # Modern usage assumes $path is the folder containing |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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7 # the Kraken database of interest: |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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8 # |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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9 new_style_test_entry "Test Database" ${__HERE__}/test_db |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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10 |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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11 # The kraken wrapper still supports an alternative |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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12 # legacy usage where $path/$name is the folder |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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13 # containing the Kraken database of interest, meaning |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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14 # $name must be both a folder name and human readable |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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15 # description of the DB to show in the Galaxy UI: |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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16 old_style_test_entry test_db ${__HERE__} |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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17 |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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18 # NOTE: This legacy style should be avoided as other |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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19 # tools also using the kraken_database.loc file may |
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9a5be5b1a5c9
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/ commit 06345505a91f3dcfa8a37dceb6f25e95806dddc8"
iuc
parents:
diff
changeset
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20 # not understand it! |
