Mercurial > repos > devteam > lastz
annotate test-data/score_file.txt @ 6:b6d7308c3728 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit c5379af63b23648020a4709f8ed9d9eac26582aa
author | iuc |
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date | Fri, 02 Mar 2018 12:07:00 -0500 |
parents | bd84ff27bc16 |
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bd84ff27bc16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
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1 # This matches the default scoring set for BLASTZ |
bd84ff27bc16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
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2 |
bd84ff27bc16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
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3 bad_score = X:-1000 # used for sub['X'][*] and sub[*]['X'] |
bd84ff27bc16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
parents:
diff
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4 fill_score = -100 # used when sub[*][*] is not defined |
bd84ff27bc16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
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5 gap_open_penalty = 400 |
bd84ff27bc16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
parents:
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6 gap_extend_penalty = 30 |
bd84ff27bc16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
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7 |
bd84ff27bc16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
parents:
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8 A C G T |
bd84ff27bc16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
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9 A 91 -114 -31 -123 |
bd84ff27bc16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
parents:
diff
changeset
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10 C -114 100 -125 -31 |
bd84ff27bc16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
parents:
diff
changeset
|
11 G -31 -125 100 -114 |
bd84ff27bc16
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
devteam
parents:
diff
changeset
|
12 T -123 -31 -114 91 |