Mercurial > repos > devteam > lastz
comparison test-data/lastz_d_test2.out @ 5:bd84ff27bc16 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/lastz commit a0a0480a8df511d23ed6101a489ca06337f5ed56
| author | devteam |
|---|---|
| date | Mon, 26 Feb 2018 15:37:53 -0500 |
| parents | |
| children |
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| 4:60afcc2c1d05 | 5:bd84ff27bc16 |
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| 1 # (a LASTZ scoring set, created by "LASTZ --infer") | |
| 2 | |
| 3 bad_score = X:-1781 # used for sub[X][*] and sub[*][X] | |
| 4 fill_score = -178 # used when sub[*][*] not otherwise defined | |
| 5 gap_open_penalty = 400 | |
| 6 gap_extend_penalty = 30 | |
| 7 | |
| 8 A C G T | |
| 9 A 72 -79 -49 -97 | |
| 10 C -79 100 -178 -49 | |
| 11 G -49 -178 100 -79 | |
| 12 T -97 -49 -79 72 |